Experiment: PM with Formate and Sodium bicarbonate anaerobic with light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002285 and TX73_002290 are separated by 123 nucleotides TX73_002290 and TX73_002295 are separated by 12 nucleotides TX73_002295 and TX73_002300 are separated by 128 nucleotides
TX73_002285: TX73_002285 - DUF2336 domain-containing protein, at 486,600 to 487,685
_002285
TX73_002290: TX73_002290 - phytanoyl-CoA dioxygenase family protein, at 487,809 to 488,657
_002290
TX73_002295: TX73_002295 - tRNA (guanine(46)-N(7))-methyltransferase TrmB, at 488,670 to 489,413
_002295
TX73_002300: TX73_002300 - helix-turn-helix domain-containing protein, at 489,542 to 489,961
_002300
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 486.870 kb on + strand, within TX73_002285 at 486.870 kb on + strand, within TX73_002285 at 486.884 kb on - strand, within TX73_002285 at 486.891 kb on + strand, within TX73_002285 at 486.907 kb on - strand, within TX73_002285 at 486.909 kb on - strand, within TX73_002285 at 486.918 kb on + strand, within TX73_002285 at 486.945 kb on - strand, within TX73_002285 at 486.946 kb on - strand, within TX73_002285 at 486.951 kb on + strand, within TX73_002285 at 486.981 kb on - strand, within TX73_002285 at 486.983 kb on + strand, within TX73_002285 at 486.986 kb on + strand, within TX73_002285 at 486.989 kb on - strand, within TX73_002285 at 486.991 kb on + strand, within TX73_002285 at 486.991 kb on - strand, within TX73_002285 at 486.994 kb on - strand, within TX73_002285 at 487.019 kb on + strand, within TX73_002285 at 487.033 kb on - strand, within TX73_002285 at 487.038 kb on + strand, within TX73_002285 at 487.058 kb on + strand, within TX73_002285 at 487.064 kb on - strand, within TX73_002285 at 487.113 kb on + strand, within TX73_002285 at 487.116 kb on - strand, within TX73_002285 at 487.118 kb on + strand, within TX73_002285 at 487.118 kb on + strand, within TX73_002285 at 487.121 kb on - strand, within TX73_002285 at 487.121 kb on - strand, within TX73_002285 at 487.126 kb on - strand, within TX73_002285 at 487.128 kb on - strand, within TX73_002285 at 487.131 kb on - strand, within TX73_002285 at 487.133 kb on - strand, within TX73_002285 at 487.133 kb on - strand, within TX73_002285 at 487.156 kb on + strand, within TX73_002285 at 487.159 kb on - strand, within TX73_002285 at 487.187 kb on - strand, within TX73_002285 at 487.190 kb on + strand, within TX73_002285 at 487.190 kb on - strand, within TX73_002285 at 487.198 kb on - strand, within TX73_002285 at 487.200 kb on + strand, within TX73_002285 at 487.220 kb on + strand, within TX73_002285 at 487.228 kb on - strand, within TX73_002285 at 487.247 kb on + strand, within TX73_002285 at 487.297 kb on + strand, within TX73_002285 at 487.305 kb on - strand, within TX73_002285 at 487.310 kb on - strand, within TX73_002285 at 487.328 kb on + strand, within TX73_002285 at 487.335 kb on + strand, within TX73_002285 at 487.336 kb on - strand, within TX73_002285 at 487.336 kb on - strand, within TX73_002285 at 487.338 kb on - strand, within TX73_002285 at 487.341 kb on - strand, within TX73_002285 at 487.346 kb on + strand, within TX73_002285 at 487.349 kb on + strand, within TX73_002285 at 487.354 kb on + strand, within TX73_002285 at 487.354 kb on + strand, within TX73_002285 at 487.406 kb on - strand, within TX73_002285 at 487.406 kb on - strand, within TX73_002285 at 487.450 kb on + strand, within TX73_002285 at 487.460 kb on + strand, within TX73_002285 at 487.466 kb on + strand, within TX73_002285 at 487.497 kb on - strand, within TX73_002285 at 487.497 kb on - strand, within TX73_002285 at 487.497 kb on - strand, within TX73_002285 at 487.499 kb on + strand, within TX73_002285 at 487.502 kb on - strand, within TX73_002285 at 487.502 kb on - strand, within TX73_002285 at 487.502 kb on - strand, within TX73_002285 at 487.520 kb on - strand, within TX73_002285 at 487.533 kb on + strand, within TX73_002285 at 487.533 kb on + strand, within TX73_002285 at 487.544 kb on - strand, within TX73_002285 at 487.581 kb on - strand at 487.588 kb on - strand at 487.607 kb on + strand at 487.621 kb on + strand at 487.631 kb on + strand at 487.631 kb on + strand at 487.639 kb on - strand at 487.639 kb on - strand at 487.646 kb on - strand at 487.679 kb on + strand at 487.679 kb on + strand at 487.679 kb on + strand at 487.679 kb on + strand at 487.679 kb on + strand at 487.687 kb on - strand at 487.687 kb on - strand at 487.698 kb on + strand at 487.725 kb on + strand at 487.768 kb on + strand at 487.768 kb on + strand at 487.859 kb on + strand at 487.868 kb on - strand at 487.869 kb on - strand at 487.905 kb on + strand, within TX73_002290 at 487.910 kb on + strand, within TX73_002290 at 487.928 kb on + strand, within TX73_002290 at 487.928 kb on + strand, within TX73_002290 at 487.963 kb on - strand, within TX73_002290 at 487.975 kb on + strand, within TX73_002290 at 488.021 kb on + strand, within TX73_002290 at 488.021 kb on + strand, within TX73_002290 at 488.037 kb on + strand, within TX73_002290 at 488.114 kb on + strand, within TX73_002290 at 488.278 kb on - strand, within TX73_002290 at 488.308 kb on - strand, within TX73_002290 at 488.368 kb on + strand, within TX73_002290 at 488.374 kb on + strand, within TX73_002290 at 488.381 kb on - strand, within TX73_002290 at 488.408 kb on + strand, within TX73_002290 at 488.456 kb on + strand, within TX73_002290 at 488.606 kb on + strand at 488.668 kb on + strand at 488.668 kb on + strand at 488.668 kb on + strand at 488.676 kb on - strand at 488.676 kb on - strand at 488.676 kb on - strand at 488.791 kb on - strand, within TX73_002295 at 488.792 kb on + strand, within TX73_002295 at 488.813 kb on + strand, within TX73_002295 at 488.826 kb on + strand, within TX73_002295 at 488.826 kb on + strand, within TX73_002295 at 488.834 kb on - strand, within TX73_002295 at 488.844 kb on - strand, within TX73_002295 at 488.844 kb on - strand, within TX73_002295 at 488.844 kb on - strand, within TX73_002295 at 488.844 kb on - strand, within TX73_002295 at 488.879 kb on + strand, within TX73_002295 at 488.918 kb on - strand, within TX73_002295 at 488.921 kb on - strand, within TX73_002295 at 488.931 kb on - strand, within TX73_002295 at 488.962 kb on + strand, within TX73_002295 at 488.962 kb on + strand, within TX73_002295 at 488.974 kb on - strand, within TX73_002295 at 488.984 kb on + strand, within TX73_002295 at 488.984 kb on + strand, within TX73_002295 at 488.994 kb on + strand, within TX73_002295 at 488.999 kb on + strand, within TX73_002295 at 489.001 kb on + strand, within TX73_002295 at 489.009 kb on + strand, within TX73_002295 at 489.009 kb on - strand, within TX73_002295 at 489.014 kb on + strand, within TX73_002295 at 489.039 kb on - strand, within TX73_002295 at 489.079 kb on + strand, within TX73_002295 at 489.096 kb on + strand, within TX73_002295 at 489.112 kb on - strand, within TX73_002295 at 489.135 kb on + strand, within TX73_002295 at 489.158 kb on - strand, within TX73_002295 at 489.163 kb on - strand, within TX73_002295 at 489.197 kb on + strand, within TX73_002295 at 489.197 kb on - strand, within TX73_002295 at 489.205 kb on + strand, within TX73_002295 at 489.227 kb on + strand, within TX73_002295 at 489.288 kb on + strand, within TX73_002295 at 489.296 kb on - strand, within TX73_002295 at 489.313 kb on + strand, within TX73_002295 at 489.343 kb on - strand at 489.343 kb on - strand at 489.356 kb on - strand at 489.358 kb on + strand at 489.373 kb on + strand at 489.381 kb on - strand at 489.432 kb on + strand at 489.432 kb on + strand at 489.440 kb on - strand at 489.440 kb on - strand at 489.446 kb on + strand at 489.451 kb on + strand at 489.451 kb on + strand at 489.459 kb on - strand at 489.459 kb on - strand at 489.631 kb on + strand, within TX73_002300 at 489.643 kb on + strand, within TX73_002300 at 489.643 kb on + strand, within TX73_002300
Per-strain Table
Position Strand Gene LocusTag Fraction PM with Formate and Sodium bicarbonate anaerobic with light remove 486,870 + TX73_002285 0.25 +0.3 486,870 + TX73_002285 0.25 -0.1 486,884 - TX73_002285 0.26 -0.1 486,891 + TX73_002285 0.27 -0.1 486,907 - TX73_002285 0.28 -0.1 486,909 - TX73_002285 0.28 -0.2 486,918 + TX73_002285 0.29 +0.0 486,945 - TX73_002285 0.32 +0.3 486,946 - TX73_002285 0.32 -0.1 486,951 + TX73_002285 0.32 +0.3 486,981 - TX73_002285 0.35 +0.2 486,983 + TX73_002285 0.35 +0.5 486,986 + TX73_002285 0.36 +0.4 486,989 - TX73_002285 0.36 +0.0 486,991 + TX73_002285 0.36 +0.1 486,991 - TX73_002285 0.36 +0.3 486,994 - TX73_002285 0.36 +0.5 487,019 + TX73_002285 0.39 +0.3 487,033 - TX73_002285 0.40 -0.8 487,038 + TX73_002285 0.40 -0.5 487,058 + TX73_002285 0.42 +0.2 487,064 - TX73_002285 0.43 -0.5 487,113 + TX73_002285 0.47 -1.1 487,116 - TX73_002285 0.48 +0.3 487,118 + TX73_002285 0.48 -0.1 487,118 + TX73_002285 0.48 -0.7 487,121 - TX73_002285 0.48 -0.2 487,121 - TX73_002285 0.48 +0.4 487,126 - TX73_002285 0.48 +0.1 487,128 - TX73_002285 0.49 +0.5 487,131 - TX73_002285 0.49 -0.2 487,133 - TX73_002285 0.49 +0.8 487,133 - TX73_002285 0.49 -0.0 487,156 + TX73_002285 0.51 -0.7 487,159 - TX73_002285 0.51 +0.4 487,187 - TX73_002285 0.54 +0.1 487,190 + TX73_002285 0.54 +0.8 487,190 - TX73_002285 0.54 -0.1 487,198 - TX73_002285 0.55 -0.5 487,200 + TX73_002285 0.55 -0.2 487,220 + TX73_002285 0.57 -0.4 487,228 - TX73_002285 0.58 +0.2 487,247 + TX73_002285 0.60 +0.8 487,297 + TX73_002285 0.64 +0.6 487,305 - TX73_002285 0.65 +0.4 487,310 - TX73_002285 0.65 -1.1 487,328 + TX73_002285 0.67 -0.5 487,335 + TX73_002285 0.68 -0.2 487,336 - TX73_002285 0.68 -0.6 487,336 - TX73_002285 0.68 +0.5 487,338 - TX73_002285 0.68 -0.3 487,341 - TX73_002285 0.68 +0.3 487,346 + TX73_002285 0.69 +0.1 487,349 + TX73_002285 0.69 +0.0 487,354 + TX73_002285 0.69 +0.5 487,354 + TX73_002285 0.69 +0.5 487,406 - TX73_002285 0.74 +0.2 487,406 - TX73_002285 0.74 +1.0 487,450 + TX73_002285 0.78 +0.0 487,460 + TX73_002285 0.79 -0.3 487,466 + TX73_002285 0.80 -0.2 487,497 - TX73_002285 0.83 +0.9 487,497 - TX73_002285 0.83 +0.4 487,497 - TX73_002285 0.83 -0.2 487,499 + TX73_002285 0.83 +0.0 487,502 - TX73_002285 0.83 +0.7 487,502 - TX73_002285 0.83 +0.0 487,502 - TX73_002285 0.83 +0.4 487,520 - TX73_002285 0.85 +1.0 487,533 + TX73_002285 0.86 -0.5 487,533 + TX73_002285 0.86 +0.2 487,544 - TX73_002285 0.87 -0.3 487,581 - +0.9 487,588 - -0.0 487,607 + +0.0 487,621 + +0.5 487,631 + +0.1 487,631 + -2.2 487,639 - +0.3 487,639 - +0.0 487,646 - -0.6 487,679 + +0.1 487,679 + +0.5 487,679 + -0.3 487,679 + +0.2 487,679 + -0.5 487,687 - +0.3 487,687 - -0.8 487,698 + -0.8 487,725 + +0.1 487,768 + +0.3 487,768 + +0.5 487,859 + +0.5 487,868 - +0.1 487,869 - +0.1 487,905 + TX73_002290 0.11 +0.0 487,910 + TX73_002290 0.12 -0.6 487,928 + TX73_002290 0.14 -0.2 487,928 + TX73_002290 0.14 +0.4 487,963 - TX73_002290 0.18 -0.1 487,975 + TX73_002290 0.20 -0.2 488,021 + TX73_002290 0.25 -0.4 488,021 + TX73_002290 0.25 -0.6 488,037 + TX73_002290 0.27 -0.1 488,114 + TX73_002290 0.36 -0.5 488,278 - TX73_002290 0.55 +0.0 488,308 - TX73_002290 0.59 +0.2 488,368 + TX73_002290 0.66 +0.4 488,374 + TX73_002290 0.67 -0.2 488,381 - TX73_002290 0.67 -0.1 488,408 + TX73_002290 0.71 -0.3 488,456 + TX73_002290 0.76 +0.4 488,606 + +0.4 488,668 + -1.2 488,668 + +0.6 488,668 + -0.4 488,676 - -1.5 488,676 - -0.5 488,676 - +1.5 488,791 - TX73_002295 0.16 -0.2 488,792 + TX73_002295 0.16 -0.6 488,813 + TX73_002295 0.19 -0.3 488,826 + TX73_002295 0.21 -0.5 488,826 + TX73_002295 0.21 -0.8 488,834 - TX73_002295 0.22 +0.6 488,844 - TX73_002295 0.23 +0.5 488,844 - TX73_002295 0.23 +0.3 488,844 - TX73_002295 0.23 -1.0 488,844 - TX73_002295 0.23 -0.2 488,879 + TX73_002295 0.28 +1.3 488,918 - TX73_002295 0.33 -0.1 488,921 - TX73_002295 0.34 -0.1 488,931 - TX73_002295 0.35 -0.7 488,962 + TX73_002295 0.39 +0.1 488,962 + TX73_002295 0.39 -0.2 488,974 - TX73_002295 0.41 -0.6 488,984 + TX73_002295 0.42 +0.2 488,984 + TX73_002295 0.42 -0.3 488,994 + TX73_002295 0.44 -1.4 488,999 + TX73_002295 0.44 +0.4 489,001 + TX73_002295 0.44 -0.3 489,009 + TX73_002295 0.46 -0.1 489,009 - TX73_002295 0.46 -0.8 489,014 + TX73_002295 0.46 -1.1 489,039 - TX73_002295 0.50 -1.7 489,079 + TX73_002295 0.55 -0.5 489,096 + TX73_002295 0.57 +0.0 489,112 - TX73_002295 0.59 -0.4 489,135 + TX73_002295 0.62 +0.0 489,158 - TX73_002295 0.66 +0.5 489,163 - TX73_002295 0.66 -0.4 489,197 + TX73_002295 0.71 +0.2 489,197 - TX73_002295 0.71 +0.7 489,205 + TX73_002295 0.72 +0.1 489,227 + TX73_002295 0.75 +0.4 489,288 + TX73_002295 0.83 +0.3 489,296 - TX73_002295 0.84 -1.1 489,313 + TX73_002295 0.86 -0.7 489,343 - -0.6 489,343 - -0.1 489,356 - -0.2 489,358 + +0.3 489,373 + +0.3 489,381 - +0.6 489,432 + +0.1 489,432 + +0.2 489,440 - -0.1 489,440 - -0.1 489,446 + -0.3 489,451 + -0.6 489,451 + -0.6 489,459 - +0.2 489,459 - -2.2 489,631 + TX73_002300 0.21 +3.0 489,643 + TX73_002300 0.24 -1.0 489,643 + TX73_002300 0.24 -0.9
Or see this region's nucleotide sequence