Experiment: PM with Formate and Sodium bicarbonate anaerobic with light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001785 and TX73_001790 are separated by 128 nucleotides TX73_001790 and TX73_001795 are separated by 573 nucleotides
TX73_001785: TX73_001785 - peptidase S10, at 371,427 to 372,992
_001785
TX73_001790: TX73_001790 - alpha/beta fold hydrolase, at 373,121 to 374,089
_001790
TX73_001795: TX73_001795 - sulfate transporter family protein, at 374,663 to 375,406
_001795
Position (kb) 373
374
375 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 372.178 kb on - strand, within TX73_001785 at 372.203 kb on - strand, within TX73_001785 at 372.216 kb on + strand, within TX73_001785 at 372.254 kb on - strand, within TX73_001785 at 372.286 kb on + strand, within TX73_001785 at 372.301 kb on + strand, within TX73_001785 at 372.301 kb on + strand, within TX73_001785 at 372.367 kb on + strand, within TX73_001785 at 372.374 kb on - strand, within TX73_001785 at 372.375 kb on - strand, within TX73_001785 at 372.405 kb on + strand, within TX73_001785 at 372.432 kb on + strand, within TX73_001785 at 372.486 kb on + strand, within TX73_001785 at 372.493 kb on + strand, within TX73_001785 at 372.493 kb on + strand, within TX73_001785 at 372.501 kb on - strand, within TX73_001785 at 372.501 kb on - strand, within TX73_001785 at 372.506 kb on - strand, within TX73_001785 at 372.530 kb on - strand, within TX73_001785 at 372.532 kb on - strand, within TX73_001785 at 372.534 kb on + strand, within TX73_001785 at 372.560 kb on + strand, within TX73_001785 at 372.560 kb on - strand, within TX73_001785 at 372.572 kb on + strand, within TX73_001785 at 372.578 kb on - strand, within TX73_001785 at 372.582 kb on + strand, within TX73_001785 at 372.637 kb on - strand, within TX73_001785 at 372.656 kb on - strand, within TX73_001785 at 372.672 kb on - strand, within TX73_001785 at 372.697 kb on + strand, within TX73_001785 at 372.699 kb on - strand, within TX73_001785 at 372.713 kb on - strand, within TX73_001785 at 372.734 kb on + strand, within TX73_001785 at 372.755 kb on + strand, within TX73_001785 at 372.756 kb on + strand, within TX73_001785 at 372.764 kb on - strand, within TX73_001785 at 372.764 kb on - strand, within TX73_001785 at 372.765 kb on + strand, within TX73_001785 at 372.767 kb on + strand, within TX73_001785 at 372.773 kb on - strand, within TX73_001785 at 372.773 kb on - strand, within TX73_001785 at 372.788 kb on + strand, within TX73_001785 at 372.793 kb on + strand, within TX73_001785 at 372.795 kb on + strand, within TX73_001785 at 372.795 kb on + strand, within TX73_001785 at 372.800 kb on + strand, within TX73_001785 at 372.800 kb on + strand, within TX73_001785 at 372.801 kb on - strand, within TX73_001785 at 372.803 kb on - strand, within TX73_001785 at 372.805 kb on + strand, within TX73_001785 at 372.808 kb on - strand, within TX73_001785 at 372.810 kb on + strand, within TX73_001785 at 372.819 kb on + strand, within TX73_001785 at 372.828 kb on - strand, within TX73_001785 at 372.846 kb on + strand at 372.856 kb on + strand at 372.856 kb on + strand at 372.871 kb on - strand at 372.879 kb on + strand at 372.892 kb on + strand at 372.901 kb on + strand at 372.907 kb on - strand at 372.910 kb on - strand at 373.024 kb on + strand at 373.029 kb on + strand at 373.037 kb on - strand at 373.037 kb on - strand at 373.037 kb on - strand at 373.042 kb on - strand at 373.050 kb on - strand at 373.052 kb on + strand at 373.052 kb on + strand at 373.061 kb on - strand at 373.063 kb on + strand at 373.070 kb on + strand at 373.070 kb on + strand at 373.070 kb on + strand at 373.078 kb on - strand at 373.078 kb on - strand at 373.095 kb on + strand at 373.095 kb on + strand at 373.096 kb on + strand at 373.103 kb on - strand at 373.104 kb on - strand at 373.132 kb on - strand at 373.136 kb on - strand at 373.165 kb on - strand at 373.183 kb on + strand at 373.191 kb on - strand at 373.191 kb on - strand at 373.191 kb on - strand at 373.194 kb on + strand at 373.201 kb on - strand at 373.202 kb on - strand at 373.281 kb on - strand, within TX73_001790 at 373.298 kb on + strand, within TX73_001790 at 373.299 kb on + strand, within TX73_001790 at 373.306 kb on - strand, within TX73_001790 at 373.311 kb on - strand, within TX73_001790 at 373.330 kb on + strand, within TX73_001790 at 373.369 kb on - strand, within TX73_001790 at 373.384 kb on + strand, within TX73_001790 at 373.386 kb on + strand, within TX73_001790 at 373.386 kb on + strand, within TX73_001790 at 373.391 kb on + strand, within TX73_001790 at 373.427 kb on - strand, within TX73_001790 at 373.475 kb on - strand, within TX73_001790 at 373.492 kb on + strand, within TX73_001790 at 373.494 kb on + strand, within TX73_001790 at 373.494 kb on + strand, within TX73_001790 at 373.494 kb on + strand, within TX73_001790 at 373.498 kb on + strand, within TX73_001790 at 373.498 kb on + strand, within TX73_001790 at 373.500 kb on - strand, within TX73_001790 at 373.506 kb on - strand, within TX73_001790 at 373.506 kb on - strand, within TX73_001790 at 373.506 kb on - strand, within TX73_001790 at 373.545 kb on - strand, within TX73_001790 at 373.601 kb on + strand, within TX73_001790 at 373.604 kb on + strand, within TX73_001790 at 373.604 kb on - strand, within TX73_001790 at 373.604 kb on - strand, within TX73_001790 at 373.612 kb on - strand, within TX73_001790 at 373.614 kb on + strand, within TX73_001790 at 373.614 kb on + strand, within TX73_001790 at 373.625 kb on + strand, within TX73_001790 at 373.656 kb on + strand, within TX73_001790 at 373.664 kb on - strand, within TX73_001790 at 373.675 kb on + strand, within TX73_001790 at 373.705 kb on + strand, within TX73_001790 at 373.705 kb on + strand, within TX73_001790 at 373.713 kb on - strand, within TX73_001790 at 373.713 kb on - strand, within TX73_001790 at 373.723 kb on - strand, within TX73_001790 at 373.730 kb on + strand, within TX73_001790 at 373.735 kb on + strand, within TX73_001790 at 373.740 kb on + strand, within TX73_001790 at 373.806 kb on + strand, within TX73_001790 at 373.809 kb on + strand, within TX73_001790 at 373.904 kb on - strand, within TX73_001790 at 373.906 kb on + strand, within TX73_001790 at 373.906 kb on + strand, within TX73_001790 at 373.914 kb on - strand, within TX73_001790 at 373.914 kb on - strand, within TX73_001790 at 373.935 kb on + strand, within TX73_001790 at 373.973 kb on + strand, within TX73_001790 at 373.992 kb on + strand, within TX73_001790 at 374.019 kb on + strand at 374.022 kb on + strand at 374.022 kb on - strand at 374.030 kb on - strand at 374.030 kb on - strand at 374.084 kb on + strand at 374.084 kb on + strand at 374.092 kb on - strand at 374.097 kb on - strand at 374.102 kb on + strand at 374.134 kb on + strand at 374.197 kb on + strand at 374.356 kb on - strand at 374.356 kb on - strand at 374.356 kb on - strand at 374.469 kb on - strand at 374.535 kb on + strand at 374.629 kb on + strand at 374.661 kb on + strand at 374.669 kb on - strand at 374.669 kb on - strand at 374.681 kb on - strand at 374.729 kb on - strand at 374.747 kb on - strand, within TX73_001795 at 374.752 kb on - strand, within TX73_001795 at 374.907 kb on - strand, within TX73_001795 at 374.938 kb on + strand, within TX73_001795 at 374.946 kb on - strand, within TX73_001795 at 374.982 kb on + strand, within TX73_001795 at 374.985 kb on - strand, within TX73_001795 at 375.009 kb on + strand, within TX73_001795 at 375.009 kb on + strand, within TX73_001795 at 375.028 kb on - strand, within TX73_001795 at 375.074 kb on + strand, within TX73_001795 at 375.082 kb on - strand, within TX73_001795
Per-strain Table
Position Strand Gene LocusTag Fraction PM with Formate and Sodium bicarbonate anaerobic with light remove 372,178 - TX73_001785 0.48 -0.6 372,203 - TX73_001785 0.50 -0.5 372,216 + TX73_001785 0.50 +0.1 372,254 - TX73_001785 0.53 +0.7 372,286 + TX73_001785 0.55 +0.4 372,301 + TX73_001785 0.56 -0.0 372,301 + TX73_001785 0.56 -0.4 372,367 + TX73_001785 0.60 +0.0 372,374 - TX73_001785 0.60 -0.2 372,375 - TX73_001785 0.61 -0.2 372,405 + TX73_001785 0.62 -0.2 372,432 + TX73_001785 0.64 -0.1 372,486 + TX73_001785 0.68 -0.3 372,493 + TX73_001785 0.68 -0.2 372,493 + TX73_001785 0.68 +0.7 372,501 - TX73_001785 0.69 +0.1 372,501 - TX73_001785 0.69 -0.2 372,506 - TX73_001785 0.69 -0.2 372,530 - TX73_001785 0.70 -0.1 372,532 - TX73_001785 0.71 -0.7 372,534 + TX73_001785 0.71 +0.1 372,560 + TX73_001785 0.72 -0.0 372,560 - TX73_001785 0.72 +0.5 372,572 + TX73_001785 0.73 +0.9 372,578 - TX73_001785 0.73 +0.0 372,582 + TX73_001785 0.74 +0.1 372,637 - TX73_001785 0.77 +0.8 372,656 - TX73_001785 0.78 +0.1 372,672 - TX73_001785 0.80 -0.2 372,697 + TX73_001785 0.81 -0.1 372,699 - TX73_001785 0.81 +0.3 372,713 - TX73_001785 0.82 -0.3 372,734 + TX73_001785 0.83 +0.4 372,755 + TX73_001785 0.85 +0.1 372,756 + TX73_001785 0.85 +0.0 372,764 - TX73_001785 0.85 +0.2 372,764 - TX73_001785 0.85 -1.2 372,765 + TX73_001785 0.85 +0.5 372,767 + TX73_001785 0.86 -1.0 372,773 - TX73_001785 0.86 +0.1 372,773 - TX73_001785 0.86 -0.2 372,788 + TX73_001785 0.87 -1.2 372,793 + TX73_001785 0.87 -0.2 372,795 + TX73_001785 0.87 +0.2 372,795 + TX73_001785 0.87 -0.7 372,800 + TX73_001785 0.88 -0.1 372,800 + TX73_001785 0.88 -0.2 372,801 - TX73_001785 0.88 +0.5 372,803 - TX73_001785 0.88 +0.2 372,805 + TX73_001785 0.88 +0.3 372,808 - TX73_001785 0.88 -1.1 372,810 + TX73_001785 0.88 -0.0 372,819 + TX73_001785 0.89 -0.1 372,828 - TX73_001785 0.89 -0.3 372,846 + -0.0 372,856 + +0.3 372,856 + -1.1 372,871 - -0.8 372,879 + -0.3 372,892 + -0.7 372,901 + +0.2 372,907 - +0.8 372,910 - +0.8 373,024 + +0.0 373,029 + +0.2 373,037 - -0.7 373,037 - +0.0 373,037 - -0.3 373,042 - -0.6 373,050 - +0.2 373,052 + +0.5 373,052 + +0.9 373,061 - -0.8 373,063 + -0.4 373,070 + -0.4 373,070 + -0.3 373,070 + -0.2 373,078 - -0.8 373,078 - +0.8 373,095 + -0.3 373,095 + -0.8 373,096 + +0.5 373,103 - +0.2 373,104 - +0.4 373,132 - -0.1 373,136 - -0.3 373,165 - +0.6 373,183 + -0.0 373,191 - +0.1 373,191 - -0.2 373,191 - -0.3 373,194 + +0.9 373,201 - +0.1 373,202 - -0.2 373,281 - TX73_001790 0.17 -1.5 373,298 + TX73_001790 0.18 +0.1 373,299 + TX73_001790 0.18 -0.7 373,306 - TX73_001790 0.19 +0.2 373,311 - TX73_001790 0.20 -0.2 373,330 + TX73_001790 0.22 -0.0 373,369 - TX73_001790 0.26 +0.9 373,384 + TX73_001790 0.27 +0.7 373,386 + TX73_001790 0.27 +0.0 373,386 + TX73_001790 0.27 +1.0 373,391 + TX73_001790 0.28 -0.5 373,427 - TX73_001790 0.32 +0.3 373,475 - TX73_001790 0.37 -0.4 373,492 + TX73_001790 0.38 -0.4 373,494 + TX73_001790 0.38 +0.7 373,494 + TX73_001790 0.38 -0.2 373,494 + TX73_001790 0.38 +2.1 373,498 + TX73_001790 0.39 +0.2 373,498 + TX73_001790 0.39 -0.6 373,500 - TX73_001790 0.39 +0.5 373,506 - TX73_001790 0.40 -1.5 373,506 - TX73_001790 0.40 +0.3 373,506 - TX73_001790 0.40 -0.3 373,545 - TX73_001790 0.44 -2.7 373,601 + TX73_001790 0.50 +0.8 373,604 + TX73_001790 0.50 -0.2 373,604 - TX73_001790 0.50 +0.5 373,604 - TX73_001790 0.50 -0.1 373,612 - TX73_001790 0.51 +0.6 373,614 + TX73_001790 0.51 -0.5 373,614 + TX73_001790 0.51 +0.2 373,625 + TX73_001790 0.52 -0.4 373,656 + TX73_001790 0.55 +0.0 373,664 - TX73_001790 0.56 +0.5 373,675 + TX73_001790 0.57 +1.3 373,705 + TX73_001790 0.60 -0.2 373,705 + TX73_001790 0.60 +0.8 373,713 - TX73_001790 0.61 -0.8 373,713 - TX73_001790 0.61 -0.4 373,723 - TX73_001790 0.62 -0.1 373,730 + TX73_001790 0.63 +0.4 373,735 + TX73_001790 0.63 +0.2 373,740 + TX73_001790 0.64 -0.5 373,806 + TX73_001790 0.71 +0.5 373,809 + TX73_001790 0.71 +0.1 373,904 - TX73_001790 0.81 +0.1 373,906 + TX73_001790 0.81 +0.4 373,906 + TX73_001790 0.81 +0.8 373,914 - TX73_001790 0.82 +0.5 373,914 - TX73_001790 0.82 +0.1 373,935 + TX73_001790 0.84 +0.3 373,973 + TX73_001790 0.88 -0.8 373,992 + TX73_001790 0.90 -0.1 374,019 + +0.0 374,022 + -0.2 374,022 - -0.2 374,030 - +0.2 374,030 - +0.1 374,084 + +0.6 374,084 + -0.3 374,092 - -0.2 374,097 - +0.1 374,102 + +0.0 374,134 + +0.2 374,197 + +0.2 374,356 - -0.5 374,356 - -0.7 374,356 - +0.6 374,469 - +0.5 374,535 + -0.6 374,629 + +0.4 374,661 + +0.0 374,669 - -0.1 374,669 - +0.6 374,681 - -0.4 374,729 - +0.1 374,747 - TX73_001795 0.11 -0.4 374,752 - TX73_001795 0.12 -0.2 374,907 - TX73_001795 0.33 +0.6 374,938 + TX73_001795 0.37 +1.2 374,946 - TX73_001795 0.38 +3.0 374,982 + TX73_001795 0.43 +1.4 374,985 - TX73_001795 0.43 +2.0 375,009 + TX73_001795 0.47 -0.8 375,009 + TX73_001795 0.47 -0.1 375,028 - TX73_001795 0.49 -0.2 375,074 + TX73_001795 0.55 -0.3 375,082 - TX73_001795 0.56 +0.9
Or see this region's nucleotide sequence