Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_008075

Experiment: PM with Formate and Sodium bicarbonate anaerobic with light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_008070 and TX73_008075 are separated by 224 nucleotidesTX73_008075 and TX73_008080 are separated by 77 nucleotidesTX73_008080 and TX73_008085 are separated by 4 nucleotides TX73_008070: TX73_008070 - dihydrodipicolinate synthase family protein, at 1,746,106 to 1,746,981 _008070 TX73_008075: TX73_008075 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 1,747,206 to 1,749,536 _008075 TX73_008080: TX73_008080 - LemA family protein, at 1,749,614 to 1,750,228 _008080 TX73_008085: TX73_008085 - YgcG family protein, at 1,750,233 to 1,751,156 _008085 Position (kb) 1747 1748 1749 1750Strain fitness (log2 ratio) -2 -1 0 1at 1746.212 kb on - strand, within TX73_008070at 1746.224 kb on + strand, within TX73_008070at 1746.224 kb on + strand, within TX73_008070at 1746.224 kb on + strand, within TX73_008070at 1746.232 kb on - strand, within TX73_008070at 1746.232 kb on - strand, within TX73_008070at 1746.232 kb on - strand, within TX73_008070at 1746.232 kb on - strand, within TX73_008070at 1746.245 kb on - strand, within TX73_008070at 1746.259 kb on + strand, within TX73_008070at 1746.261 kb on + strand, within TX73_008070at 1746.274 kb on - strand, within TX73_008070at 1746.281 kb on + strand, within TX73_008070at 1746.283 kb on + strand, within TX73_008070at 1746.283 kb on + strand, within TX73_008070at 1746.284 kb on - strand, within TX73_008070at 1746.284 kb on - strand, within TX73_008070at 1746.305 kb on + strand, within TX73_008070at 1746.375 kb on + strand, within TX73_008070at 1746.383 kb on - strand, within TX73_008070at 1746.383 kb on - strand, within TX73_008070at 1746.443 kb on + strand, within TX73_008070at 1746.504 kb on + strand, within TX73_008070at 1746.509 kb on + strand, within TX73_008070at 1746.512 kb on - strand, within TX73_008070at 1746.542 kb on + strand, within TX73_008070at 1746.603 kb on + strand, within TX73_008070at 1746.603 kb on + strand, within TX73_008070at 1746.629 kb on - strand, within TX73_008070at 1746.657 kb on + strand, within TX73_008070at 1746.673 kb on + strand, within TX73_008070at 1746.673 kb on + strand, within TX73_008070at 1746.681 kb on - strand, within TX73_008070at 1746.683 kb on - strand, within TX73_008070at 1746.737 kb on - strand, within TX73_008070at 1746.744 kb on + strand, within TX73_008070at 1746.745 kb on + strand, within TX73_008070at 1746.770 kb on - strand, within TX73_008070at 1746.771 kb on + strand, within TX73_008070at 1746.771 kb on + strand, within TX73_008070at 1746.771 kb on + strand, within TX73_008070at 1746.771 kb on - strand, within TX73_008070at 1746.779 kb on - strand, within TX73_008070at 1746.779 kb on - strand, within TX73_008070at 1746.783 kb on + strand, within TX73_008070at 1746.796 kb on + strand, within TX73_008070at 1746.796 kb on + strand, within TX73_008070at 1746.796 kb on + strand, within TX73_008070at 1746.872 kb on - strand, within TX73_008070at 1746.883 kb on - strand, within TX73_008070at 1746.888 kb on + strand, within TX73_008070at 1746.914 kb on - strandat 1746.950 kb on - strandat 1746.964 kb on - strandat 1746.989 kb on - strandat 1746.989 kb on - strandat 1746.989 kb on - strandat 1746.989 kb on - strandat 1746.989 kb on - strandat 1747.015 kb on - strandat 1747.130 kb on - strandat 1747.141 kb on + strandat 1747.149 kb on - strandat 1747.150 kb on - strandat 1747.160 kb on + strandat 1747.222 kb on + strandat 1747.222 kb on + strandat 1747.240 kb on - strandat 1747.250 kb on + strandat 1747.250 kb on - strandat 1747.356 kb on - strandat 1747.367 kb on - strandat 1747.389 kb on - strandat 1747.429 kb on + strandat 1747.462 kb on + strand, within TX73_008075at 1747.486 kb on - strand, within TX73_008075at 1747.514 kb on - strand, within TX73_008075at 1747.623 kb on + strand, within TX73_008075at 1747.676 kb on - strand, within TX73_008075at 1747.722 kb on + strand, within TX73_008075at 1747.722 kb on + strand, within TX73_008075at 1747.737 kb on - strand, within TX73_008075at 1747.756 kb on - strand, within TX73_008075at 1747.763 kb on + strand, within TX73_008075at 1747.763 kb on + strand, within TX73_008075at 1747.771 kb on - strand, within TX73_008075at 1747.771 kb on - strand, within TX73_008075at 1747.773 kb on + strand, within TX73_008075at 1747.776 kb on - strand, within TX73_008075at 1747.857 kb on - strand, within TX73_008075at 1747.897 kb on + strand, within TX73_008075at 1747.902 kb on + strand, within TX73_008075at 1747.922 kb on + strand, within TX73_008075at 1747.922 kb on + strand, within TX73_008075at 1747.940 kb on - strand, within TX73_008075at 1747.965 kb on - strand, within TX73_008075at 1748.373 kb on + strand, within TX73_008075at 1748.428 kb on + strand, within TX73_008075at 1748.443 kb on + strand, within TX73_008075at 1748.457 kb on + strand, within TX73_008075at 1748.464 kb on - strand, within TX73_008075at 1748.464 kb on - strand, within TX73_008075at 1748.464 kb on - strand, within TX73_008075at 1748.465 kb on - strand, within TX73_008075at 1748.481 kb on + strand, within TX73_008075at 1748.489 kb on - strand, within TX73_008075at 1748.513 kb on + strand, within TX73_008075at 1748.521 kb on + strand, within TX73_008075at 1748.529 kb on - strand, within TX73_008075at 1748.545 kb on + strand, within TX73_008075at 1748.545 kb on + strand, within TX73_008075at 1748.545 kb on + strand, within TX73_008075at 1748.553 kb on - strand, within TX73_008075at 1748.553 kb on - strand, within TX73_008075at 1748.553 kb on - strand, within TX73_008075at 1748.581 kb on - strand, within TX73_008075at 1748.665 kb on - strand, within TX73_008075at 1748.667 kb on + strand, within TX73_008075at 1748.673 kb on - strand, within TX73_008075at 1748.675 kb on - strand, within TX73_008075at 1748.708 kb on + strand, within TX73_008075at 1748.709 kb on + strand, within TX73_008075at 1748.717 kb on + strand, within TX73_008075at 1748.728 kb on + strand, within TX73_008075at 1748.728 kb on + strand, within TX73_008075at 1748.751 kb on - strand, within TX73_008075at 1748.753 kb on + strand, within TX73_008075at 1748.782 kb on - strand, within TX73_008075at 1748.792 kb on - strand, within TX73_008075at 1748.829 kb on - strand, within TX73_008075at 1748.846 kb on - strand, within TX73_008075at 1748.882 kb on - strand, within TX73_008075at 1748.945 kb on + strand, within TX73_008075at 1748.983 kb on + strand, within TX73_008075at 1749.019 kb on - strand, within TX73_008075at 1749.050 kb on + strand, within TX73_008075at 1749.100 kb on - strand, within TX73_008075at 1749.105 kb on + strand, within TX73_008075at 1749.129 kb on + strand, within TX73_008075at 1749.131 kb on + strand, within TX73_008075at 1749.136 kb on + strand, within TX73_008075at 1749.139 kb on - strand, within TX73_008075at 1749.142 kb on - strand, within TX73_008075at 1749.152 kb on + strand, within TX73_008075at 1749.271 kb on - strand, within TX73_008075at 1749.288 kb on - strand, within TX73_008075at 1749.297 kb on - strand, within TX73_008075at 1749.331 kb on + strandat 1749.332 kb on + strandat 1749.370 kb on + strandat 1749.378 kb on - strandat 1749.378 kb on - strandat 1749.378 kb on - strandat 1749.413 kb on - strandat 1749.417 kb on + strandat 1749.454 kb on + strandat 1749.462 kb on + strandat 1749.467 kb on + strandat 1749.482 kb on - strandat 1749.512 kb on + strandat 1749.531 kb on + strandat 1749.566 kb on - strandat 1749.577 kb on + strandat 1749.582 kb on + strandat 1749.585 kb on - strandat 1749.585 kb on - strandat 1749.632 kb on + strandat 1749.657 kb on + strandat 1749.661 kb on + strandat 1749.661 kb on + strandat 1749.686 kb on - strand, within TX73_008080at 1749.686 kb on - strand, within TX73_008080at 1749.690 kb on - strand, within TX73_008080at 1749.692 kb on + strand, within TX73_008080at 1749.712 kb on - strand, within TX73_008080at 1749.717 kb on + strand, within TX73_008080at 1749.752 kb on + strand, within TX73_008080at 1749.779 kb on + strand, within TX73_008080at 1749.784 kb on + strand, within TX73_008080at 1749.786 kb on + strand, within TX73_008080at 1749.792 kb on - strand, within TX73_008080at 1749.809 kb on + strand, within TX73_008080at 1749.822 kb on - strand, within TX73_008080at 1749.841 kb on + strand, within TX73_008080at 1749.849 kb on - strand, within TX73_008080at 1749.861 kb on + strand, within TX73_008080at 1749.861 kb on + strand, within TX73_008080at 1749.869 kb on + strand, within TX73_008080at 1749.869 kb on - strand, within TX73_008080at 1749.949 kb on - strand, within TX73_008080at 1749.953 kb on + strand, within TX73_008080at 1750.009 kb on + strand, within TX73_008080at 1750.009 kb on + strand, within TX73_008080at 1750.017 kb on - strand, within TX73_008080at 1750.070 kb on + strand, within TX73_008080at 1750.070 kb on + strand, within TX73_008080at 1750.089 kb on + strand, within TX73_008080at 1750.123 kb on - strand, within TX73_008080at 1750.195 kb on - strandat 1750.209 kb on + strandat 1750.227 kb on - strandat 1750.278 kb on + strandat 1750.278 kb on - strandat 1750.283 kb on + strandat 1750.349 kb on - strand, within TX73_008085at 1750.349 kb on - strand, within TX73_008085at 1750.385 kb on - strand, within TX73_008085at 1750.405 kb on + strand, within TX73_008085at 1750.431 kb on + strand, within TX73_008085

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with Formate and Sodium bicarbonate anaerobic with light
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1,746,212 - TX73_008070 0.12 -0.2
1,746,224 + TX73_008070 0.13 +0.9
1,746,224 + TX73_008070 0.13 +0.9
1,746,224 + TX73_008070 0.13 -0.7
1,746,232 - TX73_008070 0.14 +1.0
1,746,232 - TX73_008070 0.14 -1.6
1,746,232 - TX73_008070 0.14 -0.1
1,746,232 - TX73_008070 0.14 +0.2
1,746,245 - TX73_008070 0.16 +0.3
1,746,259 + TX73_008070 0.17 -0.1
1,746,261 + TX73_008070 0.18 -0.6
1,746,274 - TX73_008070 0.19 -0.7
1,746,281 + TX73_008070 0.20 -0.2
1,746,283 + TX73_008070 0.20 +1.0
1,746,283 + TX73_008070 0.20 +0.5
1,746,284 - TX73_008070 0.20 +0.1
1,746,284 - TX73_008070 0.20 -0.0
1,746,305 + TX73_008070 0.23 +1.3
1,746,375 + TX73_008070 0.31 -0.2
1,746,383 - TX73_008070 0.32 -0.2
1,746,383 - TX73_008070 0.32 -0.4
1,746,443 + TX73_008070 0.38 -0.5
1,746,504 + TX73_008070 0.45 +0.2
1,746,509 + TX73_008070 0.46 +0.5
1,746,512 - TX73_008070 0.46 +0.1
1,746,542 + TX73_008070 0.50 +1.4
1,746,603 + TX73_008070 0.57 +0.4
1,746,603 + TX73_008070 0.57 -0.8
1,746,629 - TX73_008070 0.60 -1.0
1,746,657 + TX73_008070 0.63 +0.4
1,746,673 + TX73_008070 0.65 +0.2
1,746,673 + TX73_008070 0.65 +0.3
1,746,681 - TX73_008070 0.66 -0.3
1,746,683 - TX73_008070 0.66 +0.1
1,746,737 - TX73_008070 0.72 -0.8
1,746,744 + TX73_008070 0.73 +0.4
1,746,745 + TX73_008070 0.73 -1.0
1,746,770 - TX73_008070 0.76 -0.4
1,746,771 + TX73_008070 0.76 +0.5
1,746,771 + TX73_008070 0.76 -0.4
1,746,771 + TX73_008070 0.76 +0.5
1,746,771 - TX73_008070 0.76 -0.6
1,746,779 - TX73_008070 0.77 -0.0
1,746,779 - TX73_008070 0.77 -0.3
1,746,783 + TX73_008070 0.77 -0.3
1,746,796 + TX73_008070 0.79 +0.2
1,746,796 + TX73_008070 0.79 +0.8
1,746,796 + TX73_008070 0.79 +0.1
1,746,872 - TX73_008070 0.87 -0.2
1,746,883 - TX73_008070 0.89 -0.2
1,746,888 + TX73_008070 0.89 +1.2
1,746,914 - +0.7
1,746,950 - +1.2
1,746,964 - +0.1
1,746,989 - -0.2
1,746,989 - -0.7
1,746,989 - +1.3
1,746,989 - +0.0
1,746,989 - -0.3
1,747,015 - +0.0
1,747,130 - -0.0
1,747,141 + -0.1
1,747,149 - -0.4
1,747,150 - -0.2
1,747,160 + +0.4
1,747,222 + +0.3
1,747,222 + -0.1
1,747,240 - -0.1
1,747,250 + +0.5
1,747,250 - +0.3
1,747,356 - -0.6
1,747,367 - -1.2
1,747,389 - +0.2
1,747,429 + -0.3
1,747,462 + TX73_008075 0.11 +0.3
1,747,486 - TX73_008075 0.12 +0.2
1,747,514 - TX73_008075 0.13 +0.5
1,747,623 + TX73_008075 0.18 -0.1
1,747,676 - TX73_008075 0.20 +0.6
1,747,722 + TX73_008075 0.22 +0.4
1,747,722 + TX73_008075 0.22 +1.1
1,747,737 - TX73_008075 0.23 -0.6
1,747,756 - TX73_008075 0.24 -0.4
1,747,763 + TX73_008075 0.24 +0.5
1,747,763 + TX73_008075 0.24 -0.5
1,747,771 - TX73_008075 0.24 +0.6
1,747,771 - TX73_008075 0.24 +0.0
1,747,773 + TX73_008075 0.24 +1.2
1,747,776 - TX73_008075 0.24 -0.8
1,747,857 - TX73_008075 0.28 +0.0
1,747,897 + TX73_008075 0.30 -0.3
1,747,902 + TX73_008075 0.30 +0.5
1,747,922 + TX73_008075 0.31 -0.2
1,747,922 + TX73_008075 0.31 +0.1
1,747,940 - TX73_008075 0.31 +0.6
1,747,965 - TX73_008075 0.33 +0.1
1,748,373 + TX73_008075 0.50 +0.4
1,748,428 + TX73_008075 0.52 -2.3
1,748,443 + TX73_008075 0.53 -0.2
1,748,457 + TX73_008075 0.54 -0.2
1,748,464 - TX73_008075 0.54 -0.2
1,748,464 - TX73_008075 0.54 +0.5
1,748,464 - TX73_008075 0.54 +1.4
1,748,465 - TX73_008075 0.54 +0.1
1,748,481 + TX73_008075 0.55 +0.1
1,748,489 - TX73_008075 0.55 +0.1
1,748,513 + TX73_008075 0.56 +1.5
1,748,521 + TX73_008075 0.56 -0.4
1,748,529 - TX73_008075 0.57 +0.5
1,748,545 + TX73_008075 0.57 -1.0
1,748,545 + TX73_008075 0.57 -0.1
1,748,545 + TX73_008075 0.57 +0.9
1,748,553 - TX73_008075 0.58 -0.7
1,748,553 - TX73_008075 0.58 -0.1
1,748,553 - TX73_008075 0.58 +0.6
1,748,581 - TX73_008075 0.59 +0.8
1,748,665 - TX73_008075 0.63 +0.0
1,748,667 + TX73_008075 0.63 -0.5
1,748,673 - TX73_008075 0.63 -0.0
1,748,675 - TX73_008075 0.63 +0.1
1,748,708 + TX73_008075 0.64 +0.1
1,748,709 + TX73_008075 0.64 -0.2
1,748,717 + TX73_008075 0.65 +0.4
1,748,728 + TX73_008075 0.65 +0.8
1,748,728 + TX73_008075 0.65 +0.9
1,748,751 - TX73_008075 0.66 -0.3
1,748,753 + TX73_008075 0.66 +0.7
1,748,782 - TX73_008075 0.68 +0.3
1,748,792 - TX73_008075 0.68 +0.2
1,748,829 - TX73_008075 0.70 -0.9
1,748,846 - TX73_008075 0.70 -0.1
1,748,882 - TX73_008075 0.72 +1.1
1,748,945 + TX73_008075 0.75 -0.8
1,748,983 + TX73_008075 0.76 -0.8
1,749,019 - TX73_008075 0.78 +0.5
1,749,050 + TX73_008075 0.79 +0.1
1,749,100 - TX73_008075 0.81 +0.2
1,749,105 + TX73_008075 0.81 +0.7
1,749,129 + TX73_008075 0.82 +1.1
1,749,131 + TX73_008075 0.83 -0.1
1,749,136 + TX73_008075 0.83 +0.5
1,749,139 - TX73_008075 0.83 -0.6
1,749,142 - TX73_008075 0.83 +0.3
1,749,152 + TX73_008075 0.83 -0.8
1,749,271 - TX73_008075 0.89 -0.9
1,749,288 - TX73_008075 0.89 +0.2
1,749,297 - TX73_008075 0.90 -0.2
1,749,331 + -0.7
1,749,332 + -0.2
1,749,370 + -0.2
1,749,378 - -0.9
1,749,378 - +0.4
1,749,378 - +0.1
1,749,413 - -0.2
1,749,417 + +0.2
1,749,454 + +0.3
1,749,462 + +0.1
1,749,467 + +0.6
1,749,482 - +0.4
1,749,512 + -0.2
1,749,531 + -0.2
1,749,566 - +0.1
1,749,577 + -1.1
1,749,582 + +0.4
1,749,585 - +0.9
1,749,585 - +0.6
1,749,632 + -0.5
1,749,657 + -0.6
1,749,661 + -0.6
1,749,661 + -2.0
1,749,686 - TX73_008080 0.12 +0.2
1,749,686 - TX73_008080 0.12 +0.6
1,749,690 - TX73_008080 0.12 +0.2
1,749,692 + TX73_008080 0.13 -0.9
1,749,712 - TX73_008080 0.16 +1.0
1,749,717 + TX73_008080 0.17 -0.5
1,749,752 + TX73_008080 0.22 -0.6
1,749,779 + TX73_008080 0.27 +0.3
1,749,784 + TX73_008080 0.28 -0.3
1,749,786 + TX73_008080 0.28 +0.7
1,749,792 - TX73_008080 0.29 -0.5
1,749,809 + TX73_008080 0.32 +0.1
1,749,822 - TX73_008080 0.34 -0.7
1,749,841 + TX73_008080 0.37 +0.5
1,749,849 - TX73_008080 0.38 +0.0
1,749,861 + TX73_008080 0.40 -0.0
1,749,861 + TX73_008080 0.40 -0.3
1,749,869 + TX73_008080 0.41 -1.2
1,749,869 - TX73_008080 0.41 +0.1
1,749,949 - TX73_008080 0.54 +0.7
1,749,953 + TX73_008080 0.55 +0.4
1,750,009 + TX73_008080 0.64 +0.0
1,750,009 + TX73_008080 0.64 +0.2
1,750,017 - TX73_008080 0.66 +0.2
1,750,070 + TX73_008080 0.74 -0.1
1,750,070 + TX73_008080 0.74 -0.6
1,750,089 + TX73_008080 0.77 -1.5
1,750,123 - TX73_008080 0.83 -1.5
1,750,195 - +0.6
1,750,209 + -0.5
1,750,227 - -0.1
1,750,278 + -0.5
1,750,278 - -0.1
1,750,283 + +1.1
1,750,349 - TX73_008085 0.13 -0.7
1,750,349 - TX73_008085 0.13 +0.3
1,750,385 - TX73_008085 0.16 +0.4
1,750,405 + TX73_008085 0.19 -0.6
1,750,431 + TX73_008085 0.21 -0.0

Or see this region's nucleotide sequence