Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024780

Experiment: PM with Formate and Sodium bicarbonate anaerobic with light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_024775 and TX73_024780 are separated by 147 nucleotidesTX73_024780 and TX73_024785 overlap by 1 nucleotidesTX73_024785 and TX73_024790 overlap by 4 nucleotides TX73_024775: TX73_024775 - O-succinylhomoserine sulfhydrylase, at 5,380,924 to 5,382,135 _024775 TX73_024780: TX73_024780 - SGNH/GDSL hydrolase family protein, at 5,382,283 to 5,383,251 _024780 TX73_024785: TX73_024785 - GDSL-type esterase/lipase family protein, at 5,383,251 to 5,384,030 _024785 TX73_024790: TX73_024790 - OpgC domain-containing protein, at 5,384,027 to 5,385,292 _024790 Position (kb) 5382 5383 5384Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5381.354 kb on - strand, within TX73_024775at 5381.368 kb on - strand, within TX73_024775at 5381.370 kb on + strand, within TX73_024775at 5381.402 kb on - strand, within TX73_024775at 5381.426 kb on + strand, within TX73_024775at 5381.490 kb on + strand, within TX73_024775at 5381.498 kb on - strand, within TX73_024775at 5381.513 kb on - strand, within TX73_024775at 5381.554 kb on - strand, within TX73_024775at 5381.561 kb on - strand, within TX73_024775at 5381.578 kb on - strand, within TX73_024775at 5381.582 kb on + strand, within TX73_024775at 5381.592 kb on + strand, within TX73_024775at 5381.594 kb on + strand, within TX73_024775at 5381.595 kb on - strand, within TX73_024775at 5381.608 kb on - strand, within TX73_024775at 5381.614 kb on + strand, within TX73_024775at 5381.647 kb on + strand, within TX73_024775at 5381.655 kb on - strand, within TX73_024775at 5381.669 kb on - strand, within TX73_024775at 5381.704 kb on - strand, within TX73_024775at 5381.712 kb on - strand, within TX73_024775at 5381.714 kb on - strand, within TX73_024775at 5381.750 kb on + strand, within TX73_024775at 5381.779 kb on - strand, within TX73_024775at 5381.805 kb on - strand, within TX73_024775at 5381.808 kb on + strand, within TX73_024775at 5381.816 kb on - strand, within TX73_024775at 5381.838 kb on - strand, within TX73_024775at 5381.848 kb on + strand, within TX73_024775at 5381.848 kb on + strand, within TX73_024775at 5381.872 kb on - strand, within TX73_024775at 5381.872 kb on - strand, within TX73_024775at 5381.877 kb on - strand, within TX73_024775at 5381.883 kb on - strand, within TX73_024775at 5381.883 kb on - strand, within TX73_024775at 5381.885 kb on + strand, within TX73_024775at 5381.885 kb on + strand, within TX73_024775at 5381.885 kb on + strand, within TX73_024775at 5381.915 kb on - strand, within TX73_024775at 5381.934 kb on + strand, within TX73_024775at 5382.020 kb on + strandat 5382.020 kb on + strandat 5382.040 kb on + strandat 5382.074 kb on - strandat 5382.085 kb on - strandat 5382.129 kb on + strandat 5382.129 kb on + strandat 5382.137 kb on - strandat 5382.153 kb on - strandat 5382.153 kb on - strandat 5382.190 kb on + strandat 5382.198 kb on - strandat 5382.198 kb on - strandat 5382.200 kb on + strandat 5382.210 kb on + strandat 5382.240 kb on - strandat 5382.241 kb on + strandat 5382.241 kb on + strandat 5382.281 kb on + strandat 5382.289 kb on - strandat 5382.290 kb on + strandat 5382.315 kb on + strandat 5382.323 kb on - strandat 5382.329 kb on + strandat 5382.331 kb on - strandat 5382.351 kb on + strandat 5382.360 kb on - strandat 5382.385 kb on + strand, within TX73_024780at 5382.393 kb on - strand, within TX73_024780at 5382.427 kb on - strand, within TX73_024780at 5382.430 kb on - strand, within TX73_024780at 5382.448 kb on - strand, within TX73_024780at 5382.472 kb on - strand, within TX73_024780at 5382.473 kb on + strand, within TX73_024780at 5382.473 kb on + strand, within TX73_024780at 5382.473 kb on + strand, within TX73_024780at 5382.481 kb on - strand, within TX73_024780at 5382.561 kb on + strand, within TX73_024780at 5382.568 kb on - strand, within TX73_024780at 5382.585 kb on - strand, within TX73_024780at 5382.594 kb on + strand, within TX73_024780at 5382.602 kb on - strand, within TX73_024780at 5382.623 kb on + strand, within TX73_024780at 5382.661 kb on - strand, within TX73_024780at 5382.663 kb on + strand, within TX73_024780at 5382.663 kb on + strand, within TX73_024780at 5382.671 kb on - strand, within TX73_024780at 5382.671 kb on - strand, within TX73_024780at 5382.689 kb on + strand, within TX73_024780at 5382.696 kb on + strand, within TX73_024780at 5382.697 kb on - strand, within TX73_024780at 5382.697 kb on - strand, within TX73_024780at 5382.704 kb on - strand, within TX73_024780at 5382.730 kb on - strand, within TX73_024780at 5382.732 kb on + strand, within TX73_024780at 5382.732 kb on + strand, within TX73_024780at 5382.732 kb on - strand, within TX73_024780at 5382.740 kb on - strand, within TX73_024780at 5382.775 kb on + strand, within TX73_024780at 5382.826 kb on + strand, within TX73_024780at 5382.853 kb on + strand, within TX73_024780at 5382.861 kb on - strand, within TX73_024780at 5382.861 kb on - strand, within TX73_024780at 5382.875 kb on + strand, within TX73_024780at 5382.880 kb on + strand, within TX73_024780at 5382.888 kb on - strand, within TX73_024780at 5382.895 kb on - strand, within TX73_024780at 5382.899 kb on - strand, within TX73_024780at 5382.910 kb on + strand, within TX73_024780at 5382.915 kb on + strand, within TX73_024780at 5382.915 kb on + strand, within TX73_024780at 5382.915 kb on + strand, within TX73_024780at 5382.933 kb on - strand, within TX73_024780at 5382.940 kb on - strand, within TX73_024780at 5382.947 kb on + strand, within TX73_024780at 5382.962 kb on - strand, within TX73_024780at 5382.967 kb on - strand, within TX73_024780at 5382.969 kb on + strand, within TX73_024780at 5382.977 kb on - strand, within TX73_024780at 5382.990 kb on - strand, within TX73_024780at 5383.011 kb on + strand, within TX73_024780at 5383.023 kb on - strand, within TX73_024780at 5383.037 kb on + strand, within TX73_024780at 5383.037 kb on + strand, within TX73_024780at 5383.037 kb on + strand, within TX73_024780at 5383.043 kb on + strand, within TX73_024780at 5383.045 kb on - strand, within TX73_024780at 5383.045 kb on - strand, within TX73_024780at 5383.045 kb on - strand, within TX73_024780at 5383.045 kb on - strand, within TX73_024780at 5383.045 kb on - strand, within TX73_024780at 5383.100 kb on + strand, within TX73_024780at 5383.116 kb on + strand, within TX73_024780at 5383.117 kb on + strand, within TX73_024780at 5383.131 kb on - strand, within TX73_024780at 5383.146 kb on + strand, within TX73_024780at 5383.146 kb on + strand, within TX73_024780at 5383.154 kb on - strand, within TX73_024780at 5383.154 kb on - strand, within TX73_024780at 5383.181 kb on - strandat 5383.191 kb on - strandat 5383.235 kb on + strandat 5383.235 kb on + strandat 5383.235 kb on + strandat 5383.236 kb on + strandat 5383.243 kb on - strandat 5383.245 kb on - strandat 5383.249 kb on + strandat 5383.249 kb on + strandat 5383.255 kb on + strandat 5383.257 kb on - strandat 5383.261 kb on + strandat 5383.261 kb on + strandat 5383.261 kb on + strandat 5383.261 kb on + strandat 5383.261 kb on + strandat 5383.261 kb on + strandat 5383.261 kb on + strandat 5383.261 kb on + strandat 5383.261 kb on + strandat 5383.268 kb on + strandat 5383.269 kb on - strandat 5383.269 kb on - strandat 5383.269 kb on - strandat 5383.269 kb on - strandat 5383.269 kb on - strandat 5383.269 kb on - strandat 5383.269 kb on - strandat 5383.279 kb on - strandat 5383.289 kb on - strandat 5383.329 kb on + strand, within TX73_024785at 5383.341 kb on - strand, within TX73_024785at 5383.347 kb on - strand, within TX73_024785at 5383.361 kb on + strand, within TX73_024785at 5383.366 kb on + strand, within TX73_024785at 5383.374 kb on - strand, within TX73_024785at 5383.394 kb on + strand, within TX73_024785at 5383.409 kb on + strand, within TX73_024785at 5383.430 kb on + strand, within TX73_024785at 5383.436 kb on + strand, within TX73_024785at 5383.446 kb on - strand, within TX73_024785at 5383.491 kb on - strand, within TX73_024785at 5383.503 kb on - strand, within TX73_024785at 5383.507 kb on + strand, within TX73_024785at 5383.518 kb on - strand, within TX73_024785at 5383.530 kb on + strand, within TX73_024785at 5383.535 kb on + strand, within TX73_024785at 5383.571 kb on + strand, within TX73_024785at 5383.572 kb on + strand, within TX73_024785at 5383.575 kb on - strand, within TX73_024785at 5383.579 kb on - strand, within TX73_024785at 5383.580 kb on - strand, within TX73_024785at 5383.601 kb on - strand, within TX73_024785at 5383.616 kb on + strand, within TX73_024785at 5383.624 kb on - strand, within TX73_024785at 5383.642 kb on - strand, within TX73_024785at 5383.646 kb on + strand, within TX73_024785at 5383.651 kb on + strand, within TX73_024785at 5383.659 kb on - strand, within TX73_024785at 5383.665 kb on + strand, within TX73_024785at 5383.669 kb on - strand, within TX73_024785at 5383.716 kb on + strand, within TX73_024785at 5383.716 kb on + strand, within TX73_024785at 5383.738 kb on - strand, within TX73_024785at 5383.768 kb on + strand, within TX73_024785at 5383.779 kb on + strand, within TX73_024785at 5383.784 kb on + strand, within TX73_024785at 5383.802 kb on - strand, within TX73_024785at 5383.841 kb on + strand, within TX73_024785at 5383.845 kb on - strand, within TX73_024785at 5383.858 kb on + strand, within TX73_024785at 5383.860 kb on + strand, within TX73_024785at 5383.866 kb on - strand, within TX73_024785at 5383.866 kb on - strand, within TX73_024785at 5383.868 kb on - strand, within TX73_024785at 5383.879 kb on + strand, within TX73_024785at 5383.879 kb on + strand, within TX73_024785at 5383.879 kb on + strand, within TX73_024785at 5383.894 kb on - strand, within TX73_024785at 5383.915 kb on + strand, within TX73_024785at 5383.916 kb on + strand, within TX73_024785at 5383.919 kb on - strand, within TX73_024785at 5383.924 kb on - strand, within TX73_024785at 5383.926 kb on + strand, within TX73_024785at 5383.930 kb on + strand, within TX73_024785at 5383.934 kb on - strand, within TX73_024785at 5383.946 kb on + strand, within TX73_024785at 5383.951 kb on + strand, within TX73_024785at 5383.966 kb on - strandat 5383.972 kb on + strandat 5383.980 kb on - strandat 5383.982 kb on + strandat 5384.025 kb on + strandat 5384.032 kb on + strandat 5384.067 kb on + strandat 5384.087 kb on + strandat 5384.097 kb on - strandat 5384.106 kb on + strandat 5384.113 kb on + strandat 5384.162 kb on + strand, within TX73_024790at 5384.175 kb on - strand, within TX73_024790at 5384.177 kb on + strand, within TX73_024790at 5384.177 kb on + strand, within TX73_024790at 5384.237 kb on - strand, within TX73_024790at 5384.239 kb on + strand, within TX73_024790

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with Formate and Sodium bicarbonate anaerobic with light
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5,381,354 - TX73_024775 0.35 -3.0
5,381,368 - TX73_024775 0.37 -2.9
5,381,370 + TX73_024775 0.37 -4.0
5,381,402 - TX73_024775 0.39 -4.6
5,381,426 + TX73_024775 0.41 -2.2
5,381,490 + TX73_024775 0.47 -3.1
5,381,498 - TX73_024775 0.47 -3.7
5,381,513 - TX73_024775 0.49 -5.1
5,381,554 - TX73_024775 0.52 -1.7
5,381,561 - TX73_024775 0.53 -3.2
5,381,578 - TX73_024775 0.54 -3.5
5,381,582 + TX73_024775 0.54 -4.2
5,381,592 + TX73_024775 0.55 -4.7
5,381,594 + TX73_024775 0.55 -3.0
5,381,595 - TX73_024775 0.55 -2.8
5,381,608 - TX73_024775 0.56 -3.4
5,381,614 + TX73_024775 0.57 -3.4
5,381,647 + TX73_024775 0.60 -3.5
5,381,655 - TX73_024775 0.60 -4.0
5,381,669 - TX73_024775 0.61 -3.4
5,381,704 - TX73_024775 0.64 -3.8
5,381,712 - TX73_024775 0.65 -2.8
5,381,714 - TX73_024775 0.65 -2.3
5,381,750 + TX73_024775 0.68 -4.1
5,381,779 - TX73_024775 0.71 -4.2
5,381,805 - TX73_024775 0.73 -3.2
5,381,808 + TX73_024775 0.73 -5.3
5,381,816 - TX73_024775 0.74 -3.4
5,381,838 - TX73_024775 0.75 -4.5
5,381,848 + TX73_024775 0.76 -3.1
5,381,848 + TX73_024775 0.76 -2.5
5,381,872 - TX73_024775 0.78 -4.0
5,381,872 - TX73_024775 0.78 -1.9
5,381,877 - TX73_024775 0.79 -2.5
5,381,883 - TX73_024775 0.79 -3.2
5,381,883 - TX73_024775 0.79 -1.4
5,381,885 + TX73_024775 0.79 -3.5
5,381,885 + TX73_024775 0.79 -3.5
5,381,885 + TX73_024775 0.79 -4.0
5,381,915 - TX73_024775 0.82 -4.1
5,381,934 + TX73_024775 0.83 -3.2
5,382,020 + -1.6
5,382,020 + -2.5
5,382,040 + -3.4
5,382,074 - -2.9
5,382,085 - -3.9
5,382,129 + +0.1
5,382,129 + +0.1
5,382,137 - -0.4
5,382,153 - +0.7
5,382,153 - +1.1
5,382,190 + -0.1
5,382,198 - -0.4
5,382,198 - -0.6
5,382,200 + +0.1
5,382,210 + -0.7
5,382,240 - -0.4
5,382,241 + -0.1
5,382,241 + -0.2
5,382,281 + -0.6
5,382,289 - +0.0
5,382,290 + -0.3
5,382,315 + +0.3
5,382,323 - -0.1
5,382,329 + -0.4
5,382,331 - +0.1
5,382,351 + -0.3
5,382,360 - +0.6
5,382,385 + TX73_024780 0.11 +0.4
5,382,393 - TX73_024780 0.11 -0.4
5,382,427 - TX73_024780 0.15 +0.3
5,382,430 - TX73_024780 0.15 -0.1
5,382,448 - TX73_024780 0.17 -0.3
5,382,472 - TX73_024780 0.20 -1.0
5,382,473 + TX73_024780 0.20 -0.4
5,382,473 + TX73_024780 0.20 +0.1
5,382,473 + TX73_024780 0.20 -0.5
5,382,481 - TX73_024780 0.20 +0.3
5,382,561 + TX73_024780 0.29 -0.2
5,382,568 - TX73_024780 0.29 -0.5
5,382,585 - TX73_024780 0.31 -0.0
5,382,594 + TX73_024780 0.32 -0.4
5,382,602 - TX73_024780 0.33 +0.4
5,382,623 + TX73_024780 0.35 -0.2
5,382,661 - TX73_024780 0.39 -0.7
5,382,663 + TX73_024780 0.39 -1.3
5,382,663 + TX73_024780 0.39 +0.6
5,382,671 - TX73_024780 0.40 +0.0
5,382,671 - TX73_024780 0.40 +0.2
5,382,689 + TX73_024780 0.42 -1.6
5,382,696 + TX73_024780 0.43 -0.4
5,382,697 - TX73_024780 0.43 -0.3
5,382,697 - TX73_024780 0.43 +0.5
5,382,704 - TX73_024780 0.43 +0.3
5,382,730 - TX73_024780 0.46 +0.8
5,382,732 + TX73_024780 0.46 +0.2
5,382,732 + TX73_024780 0.46 -0.2
5,382,732 - TX73_024780 0.46 +0.1
5,382,740 - TX73_024780 0.47 -0.2
5,382,775 + TX73_024780 0.51 -1.8
5,382,826 + TX73_024780 0.56 +0.1
5,382,853 + TX73_024780 0.59 +0.0
5,382,861 - TX73_024780 0.60 +0.0
5,382,861 - TX73_024780 0.60 +1.2
5,382,875 + TX73_024780 0.61 +0.9
5,382,880 + TX73_024780 0.62 +0.5
5,382,888 - TX73_024780 0.62 +0.0
5,382,895 - TX73_024780 0.63 -0.7
5,382,899 - TX73_024780 0.64 +0.0
5,382,910 + TX73_024780 0.65 +0.1
5,382,915 + TX73_024780 0.65 +0.4
5,382,915 + TX73_024780 0.65 +1.2
5,382,915 + TX73_024780 0.65 -0.2
5,382,933 - TX73_024780 0.67 +0.1
5,382,940 - TX73_024780 0.68 -0.2
5,382,947 + TX73_024780 0.69 -0.1
5,382,962 - TX73_024780 0.70 +0.6
5,382,967 - TX73_024780 0.71 +0.8
5,382,969 + TX73_024780 0.71 +0.2
5,382,977 - TX73_024780 0.72 +0.3
5,382,990 - TX73_024780 0.73 +0.8
5,383,011 + TX73_024780 0.75 +0.3
5,383,023 - TX73_024780 0.76 +0.3
5,383,037 + TX73_024780 0.78 +0.1
5,383,037 + TX73_024780 0.78 +0.6
5,383,037 + TX73_024780 0.78 +0.2
5,383,043 + TX73_024780 0.78 -0.4
5,383,045 - TX73_024780 0.79 +0.1
5,383,045 - TX73_024780 0.79 -0.2
5,383,045 - TX73_024780 0.79 -1.0
5,383,045 - TX73_024780 0.79 -0.4
5,383,045 - TX73_024780 0.79 +0.5
5,383,100 + TX73_024780 0.84 -0.8
5,383,116 + TX73_024780 0.86 +0.8
5,383,117 + TX73_024780 0.86 +0.1
5,383,131 - TX73_024780 0.88 +0.5
5,383,146 + TX73_024780 0.89 -1.1
5,383,146 + TX73_024780 0.89 -0.5
5,383,154 - TX73_024780 0.90 -0.2
5,383,154 - TX73_024780 0.90 -0.7
5,383,181 - -0.3
5,383,191 - +0.0
5,383,235 + +2.1
5,383,235 + -0.0
5,383,235 + +0.1
5,383,236 + +0.1
5,383,243 - -0.6
5,383,245 - +0.3
5,383,249 + -0.3
5,383,249 + -0.2
5,383,255 + -0.1
5,383,257 - +0.2
5,383,261 + -1.7
5,383,261 + +0.1
5,383,261 + +0.1
5,383,261 + -1.2
5,383,261 + +0.3
5,383,261 + -0.2
5,383,261 + -2.0
5,383,261 + -2.6
5,383,261 + -0.3
5,383,268 + -0.3
5,383,269 - -0.3
5,383,269 - +0.5
5,383,269 - -1.0
5,383,269 - -0.6
5,383,269 - -0.3
5,383,269 - +0.1
5,383,269 - -0.1
5,383,279 - -1.2
5,383,289 - -0.6
5,383,329 + TX73_024785 0.10 -1.5
5,383,341 - TX73_024785 0.12 -0.6
5,383,347 - TX73_024785 0.12 -1.9
5,383,361 + TX73_024785 0.14 +1.0
5,383,366 + TX73_024785 0.15 -1.0
5,383,374 - TX73_024785 0.16 -0.7
5,383,394 + TX73_024785 0.18 -1.1
5,383,409 + TX73_024785 0.20 +0.6
5,383,430 + TX73_024785 0.23 +0.4
5,383,436 + TX73_024785 0.24 -1.3
5,383,446 - TX73_024785 0.25 -0.1
5,383,491 - TX73_024785 0.31 +0.6
5,383,503 - TX73_024785 0.32 -1.2
5,383,507 + TX73_024785 0.33 +0.1
5,383,518 - TX73_024785 0.34 -0.5
5,383,530 + TX73_024785 0.36 -0.4
5,383,535 + TX73_024785 0.36 +0.4
5,383,571 + TX73_024785 0.41 -1.4
5,383,572 + TX73_024785 0.41 -1.2
5,383,575 - TX73_024785 0.42 -0.6
5,383,579 - TX73_024785 0.42 -2.6
5,383,580 - TX73_024785 0.42 -1.5
5,383,601 - TX73_024785 0.45 +1.0
5,383,616 + TX73_024785 0.47 -0.6
5,383,624 - TX73_024785 0.48 +0.7
5,383,642 - TX73_024785 0.50 -2.0
5,383,646 + TX73_024785 0.51 -0.2
5,383,651 + TX73_024785 0.51 +0.0
5,383,659 - TX73_024785 0.52 -0.5
5,383,665 + TX73_024785 0.53 -0.3
5,383,669 - TX73_024785 0.54 +0.2
5,383,716 + TX73_024785 0.60 +0.7
5,383,716 + TX73_024785 0.60 -0.4
5,383,738 - TX73_024785 0.62 -0.4
5,383,768 + TX73_024785 0.66 -0.3
5,383,779 + TX73_024785 0.68 -0.3
5,383,784 + TX73_024785 0.68 -0.0
5,383,802 - TX73_024785 0.71 -0.4
5,383,841 + TX73_024785 0.76 -0.5
5,383,845 - TX73_024785 0.76 -0.3
5,383,858 + TX73_024785 0.78 -0.4
5,383,860 + TX73_024785 0.78 -1.1
5,383,866 - TX73_024785 0.79 -0.3
5,383,866 - TX73_024785 0.79 -1.6
5,383,868 - TX73_024785 0.79 +0.6
5,383,879 + TX73_024785 0.81 -2.2
5,383,879 + TX73_024785 0.81 +0.0
5,383,879 + TX73_024785 0.81 -1.5
5,383,894 - TX73_024785 0.82 -2.4
5,383,915 + TX73_024785 0.85 -1.0
5,383,916 + TX73_024785 0.85 -1.0
5,383,919 - TX73_024785 0.86 -0.2
5,383,924 - TX73_024785 0.86 +0.4
5,383,926 + TX73_024785 0.87 -0.3
5,383,930 + TX73_024785 0.87 -1.2
5,383,934 - TX73_024785 0.88 -1.3
5,383,946 + TX73_024785 0.89 -0.1
5,383,951 + TX73_024785 0.90 -0.3
5,383,966 - -0.0
5,383,972 + +0.1
5,383,980 - -0.4
5,383,982 + -0.4
5,384,025 + +0.4
5,384,032 + +0.3
5,384,067 + -0.1
5,384,087 + +0.7
5,384,097 - +0.9
5,384,106 + -0.4
5,384,113 + -1.5
5,384,162 + TX73_024790 0.11 -0.1
5,384,175 - TX73_024790 0.12 -1.0
5,384,177 + TX73_024790 0.12 -0.5
5,384,177 + TX73_024790 0.12 -1.0
5,384,237 - TX73_024790 0.17 +0.4
5,384,239 + TX73_024790 0.17 +0.2

Or see this region's nucleotide sequence