Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024265

Experiment: PM with Formate and Sodium bicarbonate anaerobic with light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_024260 and TX73_024265 are separated by 108 nucleotidesTX73_024265 and TX73_024270 are separated by 184 nucleotides TX73_024260: TX73_024260 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 5,262,538 to 5,264,892 _024260 TX73_024265: TX73_024265 - xanthine dehydrogenase family protein subunit M, at 5,265,001 to 5,265,801 _024265 TX73_024270: TX73_024270 - CaiB/BaiF CoA-transferase family protein, at 5,265,986 to 5,267,101 _024270 Position (kb) 5265 5266Strain fitness (log2 ratio) -2 -1 0 1 2at 5264.012 kb on - strand, within TX73_024260at 5264.048 kb on + strand, within TX73_024260at 5264.048 kb on + strand, within TX73_024260at 5264.056 kb on - strand, within TX73_024260at 5264.061 kb on - strand, within TX73_024260at 5264.061 kb on - strand, within TX73_024260at 5264.118 kb on + strand, within TX73_024260at 5264.125 kb on + strand, within TX73_024260at 5264.126 kb on - strand, within TX73_024260at 5264.154 kb on + strand, within TX73_024260at 5264.191 kb on + strand, within TX73_024260at 5264.216 kb on - strand, within TX73_024260at 5264.226 kb on + strand, within TX73_024260at 5264.312 kb on - strand, within TX73_024260at 5264.338 kb on + strand, within TX73_024260at 5264.348 kb on - strand, within TX73_024260at 5264.368 kb on + strand, within TX73_024260at 5264.399 kb on + strand, within TX73_024260at 5264.407 kb on - strand, within TX73_024260at 5264.458 kb on - strand, within TX73_024260at 5264.474 kb on - strand, within TX73_024260at 5264.551 kb on - strand, within TX73_024260at 5264.560 kb on + strand, within TX73_024260at 5264.566 kb on + strand, within TX73_024260at 5264.566 kb on + strand, within TX73_024260at 5264.580 kb on + strand, within TX73_024260at 5264.581 kb on + strand, within TX73_024260at 5264.589 kb on - strand, within TX73_024260at 5264.610 kb on - strand, within TX73_024260at 5264.645 kb on - strand, within TX73_024260at 5264.727 kb on + strandat 5264.790 kb on + strandat 5264.801 kb on + strandat 5264.809 kb on - strandat 5264.882 kb on + strandat 5264.909 kb on - strandat 5264.924 kb on + strandat 5264.924 kb on + strandat 5264.932 kb on - strandat 5264.989 kb on - strandat 5265.092 kb on + strand, within TX73_024265at 5265.130 kb on + strand, within TX73_024265at 5265.130 kb on + strand, within TX73_024265at 5265.138 kb on - strand, within TX73_024265at 5265.171 kb on + strand, within TX73_024265at 5265.179 kb on - strand, within TX73_024265at 5265.191 kb on - strand, within TX73_024265at 5265.289 kb on + strand, within TX73_024265at 5265.307 kb on + strand, within TX73_024265at 5265.307 kb on - strand, within TX73_024265at 5265.307 kb on - strand, within TX73_024265at 5265.371 kb on - strand, within TX73_024265at 5265.397 kb on + strand, within TX73_024265at 5265.405 kb on - strand, within TX73_024265at 5265.443 kb on - strand, within TX73_024265at 5265.447 kb on + strand, within TX73_024265at 5265.447 kb on + strand, within TX73_024265at 5265.453 kb on - strand, within TX73_024265at 5265.455 kb on - strand, within TX73_024265at 5265.455 kb on - strand, within TX73_024265at 5265.455 kb on - strand, within TX73_024265at 5265.558 kb on - strand, within TX73_024265at 5265.576 kb on + strand, within TX73_024265at 5265.584 kb on - strand, within TX73_024265at 5265.591 kb on + strand, within TX73_024265at 5265.616 kb on + strand, within TX73_024265at 5265.633 kb on - strand, within TX73_024265at 5265.692 kb on + strand, within TX73_024265at 5265.700 kb on - strand, within TX73_024265at 5265.745 kb on - strandat 5265.754 kb on + strandat 5265.784 kb on + strandat 5265.792 kb on - strandat 5265.804 kb on - strandat 5265.819 kb on - strandat 5265.843 kb on + strandat 5265.843 kb on + strandat 5265.843 kb on + strandat 5265.849 kb on - strandat 5265.851 kb on - strandat 5265.882 kb on - strandat 5265.889 kb on - strandat 5265.970 kb on + strandat 5265.986 kb on + strandat 5265.994 kb on - strandat 5265.994 kb on - strandat 5266.008 kb on + strandat 5266.008 kb on + strandat 5266.016 kb on - strandat 5266.091 kb on - strandat 5266.098 kb on + strand, within TX73_024270at 5266.111 kb on - strand, within TX73_024270at 5266.118 kb on - strand, within TX73_024270at 5266.211 kb on + strand, within TX73_024270at 5266.213 kb on - strand, within TX73_024270at 5266.232 kb on + strand, within TX73_024270at 5266.234 kb on + strand, within TX73_024270at 5266.265 kb on + strand, within TX73_024270at 5266.303 kb on - strand, within TX73_024270at 5266.308 kb on + strand, within TX73_024270at 5266.316 kb on - strand, within TX73_024270at 5266.340 kb on - strand, within TX73_024270at 5266.360 kb on - strand, within TX73_024270at 5266.367 kb on + strand, within TX73_024270at 5266.446 kb on + strand, within TX73_024270at 5266.537 kb on + strand, within TX73_024270at 5266.550 kb on + strand, within TX73_024270at 5266.561 kb on + strand, within TX73_024270at 5266.578 kb on - strand, within TX73_024270at 5266.652 kb on - strand, within TX73_024270at 5266.697 kb on + strand, within TX73_024270at 5266.714 kb on + strand, within TX73_024270at 5266.750 kb on + strand, within TX73_024270at 5266.750 kb on + strand, within TX73_024270at 5266.750 kb on + strand, within TX73_024270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PM with Formate and Sodium bicarbonate anaerobic with light
remove
5,264,012 - TX73_024260 0.63 +1.3
5,264,048 + TX73_024260 0.64 -0.3
5,264,048 + TX73_024260 0.64 +0.7
5,264,056 - TX73_024260 0.64 -0.7
5,264,061 - TX73_024260 0.65 +1.0
5,264,061 - TX73_024260 0.65 +0.4
5,264,118 + TX73_024260 0.67 -0.4
5,264,125 + TX73_024260 0.67 -1.1
5,264,126 - TX73_024260 0.67 -0.6
5,264,154 + TX73_024260 0.69 -0.5
5,264,191 + TX73_024260 0.70 +0.2
5,264,216 - TX73_024260 0.71 +0.2
5,264,226 + TX73_024260 0.72 +0.6
5,264,312 - TX73_024260 0.75 +0.7
5,264,338 + TX73_024260 0.76 -0.0
5,264,348 - TX73_024260 0.77 -0.1
5,264,368 + TX73_024260 0.78 -0.5
5,264,399 + TX73_024260 0.79 +0.5
5,264,407 - TX73_024260 0.79 -0.3
5,264,458 - TX73_024260 0.82 -1.0
5,264,474 - TX73_024260 0.82 +0.4
5,264,551 - TX73_024260 0.85 -1.1
5,264,560 + TX73_024260 0.86 -0.2
5,264,566 + TX73_024260 0.86 -0.1
5,264,566 + TX73_024260 0.86 +1.9
5,264,580 + TX73_024260 0.87 +1.1
5,264,581 + TX73_024260 0.87 +0.0
5,264,589 - TX73_024260 0.87 +0.7
5,264,610 - TX73_024260 0.88 -0.1
5,264,645 - TX73_024260 0.89 -1.5
5,264,727 + -0.0
5,264,790 + -0.6
5,264,801 + -0.3
5,264,809 - +0.0
5,264,882 + +0.0
5,264,909 - -0.6
5,264,924 + -1.8
5,264,924 + +1.0
5,264,932 - +0.9
5,264,989 - -0.6
5,265,092 + TX73_024265 0.11 -0.7
5,265,130 + TX73_024265 0.16 -0.8
5,265,130 + TX73_024265 0.16 -0.5
5,265,138 - TX73_024265 0.17 -0.5
5,265,171 + TX73_024265 0.21 -0.5
5,265,179 - TX73_024265 0.22 -0.3
5,265,191 - TX73_024265 0.24 -0.3
5,265,289 + TX73_024265 0.36 -0.2
5,265,307 + TX73_024265 0.38 +0.2
5,265,307 - TX73_024265 0.38 +0.4
5,265,307 - TX73_024265 0.38 -0.2
5,265,371 - TX73_024265 0.46 -0.3
5,265,397 + TX73_024265 0.49 -0.4
5,265,405 - TX73_024265 0.50 +0.1
5,265,443 - TX73_024265 0.55 -0.6
5,265,447 + TX73_024265 0.56 +0.7
5,265,447 + TX73_024265 0.56 +0.3
5,265,453 - TX73_024265 0.56 -0.4
5,265,455 - TX73_024265 0.57 -2.0
5,265,455 - TX73_024265 0.57 +0.0
5,265,455 - TX73_024265 0.57 -1.1
5,265,558 - TX73_024265 0.70 -0.3
5,265,576 + TX73_024265 0.72 -0.1
5,265,584 - TX73_024265 0.73 +0.5
5,265,591 + TX73_024265 0.74 -0.4
5,265,616 + TX73_024265 0.77 +0.0
5,265,633 - TX73_024265 0.79 +0.6
5,265,692 + TX73_024265 0.86 -0.1
5,265,700 - TX73_024265 0.87 -0.1
5,265,745 - -1.0
5,265,754 + -0.5
5,265,784 + +0.8
5,265,792 - +0.5
5,265,804 - +0.8
5,265,819 - -0.1
5,265,843 + -0.2
5,265,843 + +0.5
5,265,843 + -0.9
5,265,849 - -1.8
5,265,851 - +0.2
5,265,882 - +0.2
5,265,889 - +0.2
5,265,970 + +0.5
5,265,986 + -0.1
5,265,994 - -1.3
5,265,994 - -0.2
5,266,008 + +0.3
5,266,008 + -0.9
5,266,016 - +0.4
5,266,091 - -0.2
5,266,098 + TX73_024270 0.10 -0.6
5,266,111 - TX73_024270 0.11 -1.1
5,266,118 - TX73_024270 0.12 +0.0
5,266,211 + TX73_024270 0.20 -0.6
5,266,213 - TX73_024270 0.20 -0.0
5,266,232 + TX73_024270 0.22 +0.1
5,266,234 + TX73_024270 0.22 +1.2
5,266,265 + TX73_024270 0.25 +0.3
5,266,303 - TX73_024270 0.28 +0.4
5,266,308 + TX73_024270 0.29 +0.5
5,266,316 - TX73_024270 0.30 +1.3
5,266,340 - TX73_024270 0.32 +0.9
5,266,360 - TX73_024270 0.34 +0.7
5,266,367 + TX73_024270 0.34 -0.3
5,266,446 + TX73_024270 0.41 -0.2
5,266,537 + TX73_024270 0.49 +0.1
5,266,550 + TX73_024270 0.51 -1.2
5,266,561 + TX73_024270 0.52 +0.5
5,266,578 - TX73_024270 0.53 +0.8
5,266,652 - TX73_024270 0.60 +0.2
5,266,697 + TX73_024270 0.64 +0.7
5,266,714 + TX73_024270 0.65 +1.8
5,266,750 + TX73_024270 0.68 -0.8
5,266,750 + TX73_024270 0.68 +0.3
5,266,750 + TX73_024270 0.68 +0.2

Or see this region's nucleotide sequence