Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011635

Experiment: PM with Formate and Sodium bicarbonate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with Formate and Sodium bicarbonate anaerobic with light
2,550,056	-		TX73_011625	0.87	+0.1
2,550,058	+		TX73_011625	0.87	+0.0
2,550,058	+		TX73_011625	0.87	-1.3
2,550,066	-		TX73_011625	0.87	-0.4
2,550,105	-		TX73_011625	0.88	+0.1
2,550,114	+		TX73_011625	0.88	+0.6
2,550,150	+		TX73_011625	0.89	+1.2
2,550,195	+		TX73_011625	0.90	+0.5
2,550,195	-		TX73_011625	0.90	-0.3
2,550,203	-				-1.7
2,550,219	+				+0.0
2,550,219	+				+0.3
2,550,219	+				-0.1
2,550,219	+				-0.3
2,550,227	-				-0.2
2,550,227	-				-0.5
2,550,252	+				-0.0
2,550,252	+				+0.2
2,550,252	+				-0.4
2,550,259	-				-1.5
2,550,281	+				-2.3
2,550,290	+				-0.3
2,550,310	+				-2.6
2,550,310	-				-1.5
2,550,311	-				-1.4
2,550,318	-				+0.3
2,550,331	+				+0.1
2,550,347	+				+0.8
2,550,357	+				+0.6
2,550,365	-				-0.0
2,550,380	+				+0.3
2,550,380	+				-0.1
2,550,410	-				-0.9
2,550,415	-				-1.0
2,550,420	-				+0.1
2,550,422	+				+0.4
2,550,424	+				+0.2
2,550,430	-				+0.2
2,550,430	-				+0.1
2,550,430	-				-0.2
2,550,442	+				+0.4
2,550,449	+				-0.3
2,550,451	+				-0.3
2,550,457	-				+0.0
2,550,468	+				+1.8
2,550,476	-				-1.1
2,550,478	+				+0.2
2,550,482	+				-0.5
2,550,506	-				-0.6
2,550,532	+				+0.0
2,550,532	-				+0.1
2,550,538	-				+0.4
2,550,551	-				+0.3
2,550,558	+				-2.3
2,550,561	-				-1.1
2,550,561	-				+0.1
2,550,563	+				-1.5
2,550,571	-				+0.6
2,550,600	+				-0.0
2,550,608	-				+1.8
2,550,613	-				-0.2
2,550,613	-				+0.6
2,550,652	+				+0.7
2,550,665	-				+0.5
2,550,684	+				+0.5
2,550,684	+				-0.2
2,550,684	+				+0.4
2,550,692	-				+0.4
2,550,704	+				-0.5
2,550,708	+				-1.6
2,550,714	+				-0.0
2,550,728	-				-0.2
2,550,728	-				-0.1
2,550,749	-		TX73_011630	0.11	+0.0
2,550,754	+		TX73_011630	0.13	+0.3
2,550,787	+		TX73_011630	0.26	-0.7
2,550,850	+		TX73_011630	0.52	-1.1
2,550,856	-		TX73_011630	0.55	-0.7
2,550,869	+		TX73_011630	0.60	-0.1
2,550,907	-		TX73_011630	0.76	+0.5
2,550,918	+		TX73_011630	0.80	-0.3
2,550,924	-		TX73_011630	0.83	-1.1
2,550,926	-		TX73_011630	0.84	-0.8
2,550,926	-		TX73_011630	0.84	-0.3
2,550,928	-		TX73_011630	0.84	-0.1
2,550,928	-		TX73_011630	0.84	-1.6
2,550,979	-				-0.1
2,550,994	+				-0.4
2,551,005	+				-0.9
2,551,005	+				-0.8
2,551,013	-				+0.5
2,551,013	-				+1.3
2,551,020	-				-0.2
2,551,040	+				-0.7
2,551,072	+				+0.2
2,551,087	-				+0.1
2,551,109	+				-0.1
2,551,114	+				-0.9
2,551,156	+				-1.4
2,551,156	+				+0.2
2,551,157	-				-0.1
2,551,164	-				+0.0
2,551,165	+				-0.0
2,551,171	+				-0.0
2,551,192	-				+0.2
2,551,208	-				-2.0
2,551,222	+				+0.0
2,551,227	+				-0.3
2,551,230	-				-0.3
2,551,235	-				-0.3
2,551,269	+		TX73_011635	0.10	-0.4
2,551,269	+		TX73_011635	0.10	-0.2
2,551,277	-		TX73_011635	0.11	-0.6
2,551,277	-		TX73_011635	0.11	-0.4
2,551,277	-		TX73_011635	0.11	-0.6
2,551,287	-		TX73_011635	0.11	-0.2
2,551,305	+		TX73_011635	0.12	-1.6
2,551,305	+		TX73_011635	0.12	+0.9
2,551,305	+		TX73_011635	0.12	+0.3
2,551,313	-		TX73_011635	0.12	-1.9
2,551,313	-		TX73_011635	0.12	-2.5
2,551,321	-		TX73_011635	0.13	-0.1
2,551,386	+		TX73_011635	0.16	-0.3
2,551,389	-		TX73_011635	0.16	+0.6
2,551,389	-		TX73_011635	0.16	-0.2
2,551,414	+		TX73_011635	0.17	-0.6
2,551,422	-		TX73_011635	0.18	+0.1
2,551,440	-		TX73_011635	0.18	-1.5
2,551,458	-		TX73_011635	0.19	+0.5
2,551,462	+		TX73_011635	0.19	-0.2
2,551,496	+		TX73_011635	0.21	-0.7
2,551,506	+		TX73_011635	0.22	+0.2
2,551,506	+		TX73_011635	0.22	+0.5
2,551,509	-		TX73_011635	0.22	+0.1
2,551,511	+		TX73_011635	0.22	-2.1
2,551,523	+		TX73_011635	0.22	-0.5
2,551,532	+		TX73_011635	0.23	-1.9
2,551,545	-		TX73_011635	0.23	-0.5
2,551,559	+		TX73_011635	0.24	-0.6
2,551,559	+		TX73_011635	0.24	+1.3
2,551,560	+		TX73_011635	0.24	+0.6
2,551,590	-		TX73_011635	0.26	-0.2
2,551,599	+		TX73_011635	0.26	+0.3
2,551,607	-		TX73_011635	0.26	+0.3
2,551,633	-		TX73_011635	0.28	+0.4
2,551,643	-		TX73_011635	0.28	-0.1
2,551,658	+		TX73_011635	0.29	-0.7
2,551,692	-		TX73_011635	0.30	-1.5
2,551,697	-		TX73_011635	0.31	-0.2
2,551,728	-		TX73_011635	0.32	+0.4
2,551,729	-		TX73_011635	0.32	-0.6
2,551,732	+		TX73_011635	0.32	+0.0
2,551,746	+		TX73_011635	0.33	-0.8
2,551,761	-		TX73_011635	0.34	-1.5
2,551,823	-		TX73_011635	0.37	-3.0
2,551,848	-		TX73_011635	0.38	+0.7
2,551,873	-		TX73_011635	0.39	-0.5
2,551,873	-		TX73_011635	0.39	-0.6
2,551,911	-		TX73_011635	0.41	-1.9
2,551,954	+		TX73_011635	0.43	-0.5
2,551,993	+		TX73_011635	0.45	-0.5
2,552,001	-		TX73_011635	0.45	-0.1
2,552,017	+		TX73_011635	0.46	-1.6
2,552,063	-		TX73_011635	0.48	-0.1
2,552,070	+		TX73_011635	0.48	-0.3
2,552,073	-		TX73_011635	0.48	+0.1
2,552,078	-		TX73_011635	0.49	+1.1
2,552,090	+		TX73_011635	0.49	-0.3
2,552,093	-		TX73_011635	0.49	-1.0
2,552,142	-		TX73_011635	0.52	-0.2
2,552,166	+		TX73_011635	0.53	-0.6
2,552,166	+		TX73_011635	0.53	-0.6
2,552,166	+		TX73_011635	0.53	-0.3
2,552,166	+		TX73_011635	0.53	-1.5
2,552,174	-		TX73_011635	0.53	-1.4
2,552,174	-		TX73_011635	0.53	+0.2
2,552,185	+		TX73_011635	0.54	-0.6
2,552,213	+		TX73_011635	0.55	+0.5
2,552,241	+		TX73_011635	0.56	+0.7
2,552,252	-		TX73_011635	0.57	-0.1
2,552,255	+		TX73_011635	0.57	+0.2
2,552,255	+		TX73_011635	0.57	+0.5
2,552,255	+		TX73_011635	0.57	+0.8
2,552,257	-		TX73_011635	0.57	-0.2
2,552,261	+		TX73_011635	0.57	-1.1
2,552,263	-		TX73_011635	0.58	-0.1
2,552,303	+		TX73_011635	0.59	+0.2
2,552,317	-		TX73_011635	0.60	+0.2
2,552,317	-		TX73_011635	0.60	-0.3
2,552,339	-		TX73_011635	0.61	-0.3
2,552,341	-		TX73_011635	0.61	-0.6
2,552,360	+		TX73_011635	0.62	+0.3
2,552,369	+		TX73_011635	0.63	-0.1
2,552,369	+		TX73_011635	0.63	+0.7
2,552,369	+		TX73_011635	0.63	-1.5
2,552,377	-		TX73_011635	0.63	+0.1
2,552,377	-		TX73_011635	0.63	-0.0
2,552,385	+		TX73_011635	0.63	+0.6
2,552,393	-		TX73_011635	0.64	-0.6
2,552,417	-		TX73_011635	0.65	+0.1
2,552,417	-		TX73_011635	0.65	-0.8
2,552,421	-		TX73_011635	0.65	+1.5
2,552,427	-		TX73_011635	0.65	+1.4
2,552,453	-		TX73_011635	0.67	-0.3
2,552,453	-		TX73_011635	0.67	-0.9
2,552,453	-		TX73_011635	0.67	+0.4
2,552,455	+		TX73_011635	0.67	-0.5
2,552,465	+		TX73_011635	0.67	-2.6
2,552,562	+		TX73_011635	0.72	-0.1
2,552,567	+		TX73_011635	0.72	+1.4
2,552,568	-		TX73_011635	0.72	-1.2
2,552,570	-		TX73_011635	0.72	+0.5
2,552,570	-		TX73_011635	0.72	+0.2
2,552,595	-		TX73_011635	0.73	-1.8
2,552,608	-		TX73_011635	0.74	-0.7
2,552,615	-		TX73_011635	0.74	-0.2
2,552,617	+		TX73_011635	0.74	-1.0
2,552,640	+		TX73_011635	0.75	+0.1
2,552,684	-		TX73_011635	0.77	-1.5
2,552,689	+		TX73_011635	0.78	-2.6
2,552,739	+		TX73_011635	0.80	-2.3
2,552,748	+		TX73_011635	0.81	-0.6
2,552,748	+		TX73_011635	0.81	-0.1
2,552,749	+		TX73_011635	0.81	-1.0
2,552,758	+		TX73_011635	0.81	+0.0
2,552,759	+		TX73_011635	0.81	+0.0
2,552,760	+		TX73_011635	0.81	+0.6
2,552,768	-		TX73_011635	0.81	-0.4
2,552,784	+		TX73_011635	0.82	+0.6
2,552,835	+		TX73_011635	0.85	-0.5
2,552,867	+		TX73_011635	0.86	+0.2
2,552,870	-		TX73_011635	0.86	-0.3
2,552,888	-		TX73_011635	0.87	-0.4
2,552,934	+		TX73_011635	0.89	+0.5
2,552,951	+				+0.5
2,552,995	+				-0.0
2,553,002	+				-0.1
2,553,037	-				-0.0
2,553,037	-				+1.0
2,553,076	+				-0.7
2,553,085	+				-0.0
2,553,086	+				+0.4
2,553,089	-				-0.0
2,553,099	-				+0.2
2,553,099	-				-0.6
2,553,123	-				+0.4
2,553,130	+				-0.2
2,553,137	+				+0.0
2,553,155	-				-0.8
2,553,155	-				-1.5
2,553,155	-				+0.0
2,553,155	-				-1.0
2,553,189	+				-0.6
2,553,193	+				-0.4
2,553,196	-				-0.0
2,553,199	+				+0.6
2,553,199	+				-0.3
2,553,199	+				-1.2
2,553,207	-				+0.5
2,553,207	-				-2.2
2,553,209	+				-0.1
2,553,217	-				+0.3
2,553,229	-				+0.1
2,553,230	+				+0.1
2,553,238	+				+1.9
2,553,238	+				-1.4
2,553,246	-				-1.7
2,553,246	-				-0.1
2,553,246	-				+0.3
2,553,246	-				+0.3
2,553,246	-				+0.1
2,553,246	-				-1.5
2,553,274	+				-0.4
2,553,277	-				+0.7
2,553,325	+				-1.1
2,553,325	+				-0.1
2,553,325	+				-0.3
2,553,333	-				+0.3
2,553,334	-				+0.3
2,553,339	-				-0.7
2,553,375	-		TX73_011640	0.10	-1.2
2,553,438	-		TX73_011640	0.17	-0.9
2,553,444	-		TX73_011640	0.18	-0.0
2,553,449	-		TX73_011640	0.18	-0.0
2,553,463	+		TX73_011640	0.20	+0.5
2,553,463	+		TX73_011640	0.20	+0.5
2,553,471	-		TX73_011640	0.21	-0.5
2,553,528	+		TX73_011640	0.27	-0.2
2,553,534	+		TX73_011640	0.27	-0.4
2,553,536	-		TX73_011640	0.27	-0.1
2,553,539	+		TX73_011640	0.28	-0.3
2,553,558	+		TX73_011640	0.30	+0.5
2,553,561	-		TX73_011640	0.30	+0.1
2,553,566	-		TX73_011640	0.31	+1.1
2,553,580	+		TX73_011640	0.32	-0.6
2,553,580	+		TX73_011640	0.32	+0.6
2,553,587	-		TX73_011640	0.33	-0.5
2,553,588	-		TX73_011640	0.33	-0.0
2,553,588	-		TX73_011640	0.33	-0.2
2,553,614	+		TX73_011640	0.36	-0.3
2,553,617	-		TX73_011640	0.36	-0.0
2,553,617	-		TX73_011640	0.36	+0.4
2,553,637	-		TX73_011640	0.38	-0.2
2,553,667	+		TX73_011640	0.41	-0.7
2,553,676	-		TX73_011640	0.42	-0.9
2,553,724	+		TX73_011640	0.47	-0.5
2,553,733	+		TX73_011640	0.48	-0.6
2,553,733	+		TX73_011640	0.48	-0.1
2,553,752	+		TX73_011640	0.50	+0.2
2,553,785	+		TX73_011640	0.54	+0.2
2,553,785	+		TX73_011640	0.54	-0.1
2,553,792	-		TX73_011640	0.54	-1.1
2,553,793	-		TX73_011640	0.55	-1.0
2,553,793	-		TX73_011640	0.55	-0.1
2,553,800	+		TX73_011640	0.55	+0.1
2,553,800	+		TX73_011640	0.55	-1.0
2,553,800	+		TX73_011640	0.55	+0.3
2,553,800	+		TX73_011640	0.55	-0.8
2,553,808	-		TX73_011640	0.56	+1.3
2,553,808	-		TX73_011640	0.56	-0.2
2,553,810	+		TX73_011640	0.56	-0.4
2,553,851	+		TX73_011640	0.61	+0.4
2,553,851	+		TX73_011640	0.61	+0.5
2,553,892	-		TX73_011640	0.65	+0.9
2,553,894	+		TX73_011640	0.65	+0.5
2,553,907	-		TX73_011640	0.67	-1.0
2,553,907	-		TX73_011640	0.67	-1.0
2,553,909	+		TX73_011640	0.67	-0.0
2,553,919	-		TX73_011640	0.68	-0.2
2,553,927	-		TX73_011640	0.69	+1.4
2,553,948	+		TX73_011640	0.71	-0.4
2,553,948	+		TX73_011640	0.71	-1.6
2,553,949	+		TX73_011640	0.71	-0.6
2,553,949	+		TX73_011640	0.71	+0.5
2,553,949	+		TX73_011640	0.71	-1.1
2,553,966	+		TX73_011640	0.73	-0.8
2,553,968	-		TX73_011640	0.73	-0.3
2,553,974	-		TX73_011640	0.74	-0.3
2,553,974	-		TX73_011640	0.74	+0.9
2,553,974	-		TX73_011640	0.74	-0.4
2,553,979	-		TX73_011640	0.74	-0.0
2,554,010	+		TX73_011640	0.78	+0.4
2,554,018	-		TX73_011640	0.78	-1.8
2,554,025	-		TX73_011640	0.79	+0.8
2,554,100	+		TX73_011640	0.87	+0.5
2,554,105	+		TX73_011640	0.88	-0.1
2,554,105	+		TX73_011640	0.88	+0.4
2,554,108	-		TX73_011640	0.88	-1.0
2,554,112	+		TX73_011640	0.88	-0.5
2,554,118	-		TX73_011640	0.89	-0.5
2,554,118	-		TX73_011640	0.89	-1.8
2,554,120	-		TX73_011640	0.89	-0.3
2,554,138	-				+0.3
2,554,138	-				-0.2