Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003970

Experiment: PM with Formate and Sodium bicarbonate anaerobic with light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003965 and TX73_003970 are separated by 251 nucleotidesTX73_003970 and TX73_003975 are separated by 15 nucleotides TX73_003965: TX73_003965 - IS481 family transposase, at 851,725 to 852,751 _003965 TX73_003970: TX73_003970 - hypothetical protein, at 853,003 to 853,824 _003970 TX73_003975: TX73_003975 - IS3-like element ISRpa2 family transposase, at 853,840 to 855,023 _003975 Position (kb) 853 854Strain fitness (log2 ratio) -2 -1 0 1at 852.009 kb on + strand, within TX73_003965at 852.017 kb on - strand, within TX73_003965at 852.057 kb on + strand, within TX73_003965at 852.061 kb on + strand, within TX73_003965at 852.092 kb on - strand, within TX73_003965at 852.113 kb on - strand, within TX73_003965at 852.124 kb on + strand, within TX73_003965at 852.151 kb on + strand, within TX73_003965at 852.159 kb on - strand, within TX73_003965at 852.176 kb on - strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.216 kb on - strand, within TX73_003965at 852.216 kb on - strand, within TX73_003965at 852.223 kb on - strand, within TX73_003965at 852.252 kb on + strand, within TX73_003965at 852.252 kb on + strand, within TX73_003965at 852.260 kb on - strand, within TX73_003965at 852.277 kb on + strand, within TX73_003965at 852.277 kb on + strand, within TX73_003965at 852.285 kb on - strand, within TX73_003965at 852.285 kb on - strand, within TX73_003965at 852.319 kb on + strand, within TX73_003965at 852.386 kb on + strand, within TX73_003965at 852.394 kb on - strand, within TX73_003965at 852.420 kb on + strand, within TX73_003965at 852.439 kb on + strand, within TX73_003965at 852.447 kb on + strand, within TX73_003965at 852.447 kb on - strand, within TX73_003965at 852.467 kb on - strand, within TX73_003965at 852.469 kb on + strand, within TX73_003965at 852.469 kb on + strand, within TX73_003965at 852.470 kb on - strand, within TX73_003965at 852.477 kb on - strand, within TX73_003965at 852.484 kb on + strand, within TX73_003965at 852.492 kb on - strand, within TX73_003965at 852.528 kb on - strand, within TX73_003965at 852.532 kb on + strand, within TX73_003965at 852.540 kb on - strand, within TX73_003965at 852.540 kb on - strand, within TX73_003965at 852.559 kb on + strand, within TX73_003965at 852.559 kb on + strand, within TX73_003965at 852.577 kb on + strand, within TX73_003965at 852.578 kb on + strand, within TX73_003965at 852.587 kb on + strand, within TX73_003965at 852.609 kb on + strand, within TX73_003965at 852.629 kb on + strand, within TX73_003965at 852.629 kb on + strand, within TX73_003965at 852.637 kb on - strand, within TX73_003965at 852.644 kb on + strand, within TX73_003965at 852.669 kb on - strandat 852.680 kb on + strandat 852.685 kb on + strandat 852.694 kb on + strandat 852.740 kb on - strandat 852.765 kb on + strandat 852.793 kb on - strandat 852.812 kb on - strandat 852.815 kb on + strandat 852.840 kb on + strandat 852.854 kb on + strandat 852.862 kb on - strandat 852.897 kb on - strandat 852.980 kb on + strandat 852.988 kb on - strandat 852.988 kb on - strandat 852.990 kb on + strandat 852.996 kb on - strandat 853.008 kb on - strandat 853.035 kb on - strandat 853.158 kb on + strand, within TX73_003970at 853.286 kb on - strand, within TX73_003970at 853.348 kb on - strand, within TX73_003970at 853.410 kb on + strand, within TX73_003970at 853.415 kb on + strand, within TX73_003970at 853.551 kb on - strand, within TX73_003970at 853.571 kb on + strand, within TX73_003970at 853.578 kb on - strand, within TX73_003970at 853.663 kb on + strand, within TX73_003970at 853.670 kb on + strand, within TX73_003970at 853.670 kb on + strand, within TX73_003970at 853.678 kb on - strand, within TX73_003970at 853.678 kb on - strand, within TX73_003970at 853.678 kb on - strand, within TX73_003970at 853.738 kb on + strand, within TX73_003970at 853.761 kb on - strandat 853.769 kb on - strandat 853.774 kb on + strandat 853.779 kb on - strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.855 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with Formate and Sodium bicarbonate anaerobic with light
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852,009 + TX73_003965 0.28 -0.6
852,017 - TX73_003965 0.28 -0.6
852,057 + TX73_003965 0.32 -0.1
852,061 + TX73_003965 0.33 -0.1
852,092 - TX73_003965 0.36 +0.2
852,113 - TX73_003965 0.38 +0.9
852,124 + TX73_003965 0.39 +0.7
852,151 + TX73_003965 0.41 +0.4
852,159 - TX73_003965 0.42 +0.4
852,176 - TX73_003965 0.44 +0.2
852,208 + TX73_003965 0.47 -0.1
852,208 + TX73_003965 0.47 -0.2
852,208 + TX73_003965 0.47 -0.1
852,208 + TX73_003965 0.47 +0.4
852,208 + TX73_003965 0.47 +0.9
852,208 + TX73_003965 0.47 -0.0
852,208 + TX73_003965 0.47 -0.1
852,216 - TX73_003965 0.48 +0.8
852,216 - TX73_003965 0.48 -0.1
852,223 - TX73_003965 0.48 +0.1
852,252 + TX73_003965 0.51 -1.0
852,252 + TX73_003965 0.51 +0.7
852,260 - TX73_003965 0.52 -0.7
852,277 + TX73_003965 0.54 -0.7
852,277 + TX73_003965 0.54 -0.2
852,285 - TX73_003965 0.55 +0.3
852,285 - TX73_003965 0.55 -0.3
852,319 + TX73_003965 0.58 +0.1
852,386 + TX73_003965 0.64 -0.6
852,394 - TX73_003965 0.65 +0.4
852,420 + TX73_003965 0.68 -0.5
852,439 + TX73_003965 0.70 -0.6
852,447 + TX73_003965 0.70 -0.4
852,447 - TX73_003965 0.70 +0.5
852,467 - TX73_003965 0.72 +0.2
852,469 + TX73_003965 0.72 -1.1
852,469 + TX73_003965 0.72 -0.3
852,470 - TX73_003965 0.73 -0.6
852,477 - TX73_003965 0.73 +0.3
852,484 + TX73_003965 0.74 -0.6
852,492 - TX73_003965 0.75 -0.8
852,528 - TX73_003965 0.78 +1.1
852,532 + TX73_003965 0.79 +0.1
852,540 - TX73_003965 0.79 -0.4
852,540 - TX73_003965 0.79 +0.3
852,559 + TX73_003965 0.81 +1.5
852,559 + TX73_003965 0.81 -0.2
852,577 + TX73_003965 0.83 +0.0
852,578 + TX73_003965 0.83 -0.3
852,587 + TX73_003965 0.84 +0.9
852,609 + TX73_003965 0.86 +1.0
852,629 + TX73_003965 0.88 +0.4
852,629 + TX73_003965 0.88 -0.6
852,637 - TX73_003965 0.89 -0.4
852,644 + TX73_003965 0.89 +0.6
852,669 - -0.4
852,680 + +1.1
852,685 + -1.2
852,694 + +0.0
852,740 - +0.8
852,765 + -1.4
852,793 - +0.9
852,812 - +0.7
852,815 + +0.9
852,840 + +0.0
852,854 + -0.3
852,862 - -0.3
852,897 - -1.1
852,980 + +0.1
852,988 - +0.2
852,988 - -0.9
852,990 + -0.8
852,996 - -0.1
853,008 - +1.3
853,035 - -0.6
853,158 + TX73_003970 0.19 +0.2
853,286 - TX73_003970 0.34 -0.3
853,348 - TX73_003970 0.42 -0.2
853,410 + TX73_003970 0.50 -0.0
853,415 + TX73_003970 0.50 -0.4
853,551 - TX73_003970 0.67 -1.7
853,571 + TX73_003970 0.69 -0.1
853,578 - TX73_003970 0.70 +0.7
853,663 + TX73_003970 0.80 +1.3
853,670 + TX73_003970 0.81 -1.0
853,670 + TX73_003970 0.81 -0.5
853,678 - TX73_003970 0.82 -1.7
853,678 - TX73_003970 0.82 -0.4
853,678 - TX73_003970 0.82 -2.6
853,738 + TX73_003970 0.89 +0.0
853,761 - +0.4
853,769 - +0.2
853,774 + -0.7
853,779 - -0.1
853,793 + -0.9
853,793 + +0.1
853,855 - +0.2

Or see this region's nucleotide sequence