Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011630

Experiment: PM with succinate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate anaerobic with light
2,549,758	-		TX73_011625	0.80	-0.4
2,549,774	+		TX73_011625	0.80	+0.0
2,549,787	-		TX73_011625	0.81	-0.6
2,549,813	+		TX73_011625	0.81	-0.4
2,549,828	+		TX73_011625	0.81	-0.3
2,549,834	-		TX73_011625	0.82	-0.3
2,549,836	-		TX73_011625	0.82	-0.6
2,549,836	-		TX73_011625	0.82	-0.5
2,549,850	+		TX73_011625	0.82	-0.9
2,549,858	-		TX73_011625	0.82	-0.7
2,549,860	+		TX73_011625	0.82	-0.3
2,549,876	-		TX73_011625	0.83	-0.9
2,549,878	-		TX73_011625	0.83	-0.4
2,549,922	+		TX73_011625	0.84	-1.1
2,549,922	+		TX73_011625	0.84	-2.1
2,549,922	+		TX73_011625	0.84	+0.1
2,549,922	+		TX73_011625	0.84	+0.4
2,549,927	+		TX73_011625	0.84	-0.1
2,549,930	-		TX73_011625	0.84	-2.0
2,549,930	-		TX73_011625	0.84	-0.3
2,549,930	-		TX73_011625	0.84	+1.0
2,549,930	-		TX73_011625	0.84	+0.4
2,549,930	-		TX73_011625	0.84	-0.1
2,549,930	-		TX73_011625	0.84	-0.5
2,549,930	-		TX73_011625	0.84	-0.5
2,549,930	-		TX73_011625	0.84	+0.0
2,549,943	+		TX73_011625	0.84	-0.7
2,549,943	+		TX73_011625	0.84	+0.4
2,549,949	+		TX73_011625	0.84	-1.0
2,549,968	+		TX73_011625	0.85	+0.8
2,549,968	+		TX73_011625	0.85	+0.3
2,549,975	-		TX73_011625	0.85	-0.7
2,549,976	-		TX73_011625	0.85	-2.3
2,549,976	-		TX73_011625	0.85	-1.0
2,549,986	+		TX73_011625	0.85	-0.3
2,550,013	+		TX73_011625	0.86	-2.4
2,550,016	+		TX73_011625	0.86	-0.5
2,550,043	+		TX73_011625	0.86	-0.6
2,550,048	+		TX73_011625	0.87	+0.3
2,550,056	-		TX73_011625	0.87	-0.2
2,550,058	+		TX73_011625	0.87	-0.3
2,550,058	+		TX73_011625	0.87	-1.5
2,550,066	-		TX73_011625	0.87	-1.1
2,550,105	-		TX73_011625	0.88	+0.8
2,550,114	+		TX73_011625	0.88	-0.7
2,550,150	+		TX73_011625	0.89	-0.0
2,550,195	+		TX73_011625	0.90	-1.0
2,550,195	-		TX73_011625	0.90	-0.7
2,550,203	-				-0.4
2,550,219	+				-0.8
2,550,219	+				-0.3
2,550,219	+				-0.2
2,550,219	+				-2.0
2,550,227	-				-0.3
2,550,227	-				-0.0
2,550,252	+				+0.5
2,550,252	+				-1.1
2,550,252	+				-0.2
2,550,259	-				+0.8
2,550,281	+				-1.3
2,550,290	+				-0.4
2,550,310	+				-0.6
2,550,310	-				-0.7
2,550,311	-				+0.4
2,550,318	-				-0.1
2,550,331	+				-1.3
2,550,347	+				-1.2
2,550,357	+				+0.2
2,550,365	-				-0.6
2,550,380	+				+0.1
2,550,380	+				+0.9
2,550,410	-				-1.2
2,550,415	-				-0.3
2,550,420	-				-0.0
2,550,422	+				-0.3
2,550,424	+				-0.0
2,550,430	-				-0.6
2,550,430	-				-1.0
2,550,430	-				+0.2
2,550,442	+				+0.6
2,550,449	+				+0.3
2,550,451	+				-0.2
2,550,457	-				-0.5
2,550,468	+				-1.1
2,550,476	-				-0.8
2,550,478	+				+0.5
2,550,482	+				-0.1
2,550,506	-				+0.1
2,550,532	+				-0.2
2,550,532	-				-0.6
2,550,538	-				-0.7
2,550,551	-				+0.1
2,550,558	+				-1.0
2,550,561	-				+0.1
2,550,561	-				-0.4
2,550,563	+				-0.4
2,550,571	-				-2.1
2,550,600	+				-0.7
2,550,608	-				+1.2
2,550,613	-				+0.2
2,550,613	-				+0.8
2,550,652	+				+0.5
2,550,665	-				-1.9
2,550,684	+				-3.1
2,550,684	+				+0.1
2,550,684	+				+0.4
2,550,692	-				-0.2
2,550,704	+				-0.9
2,550,708	+				-0.2
2,550,714	+				-0.7
2,550,728	-				-1.1
2,550,728	-				-1.7
2,550,749	-		TX73_011630	0.11	-0.7
2,550,754	+		TX73_011630	0.13	-0.0
2,550,787	+		TX73_011630	0.26	-0.9
2,550,850	+		TX73_011630	0.52	-0.5
2,550,856	-		TX73_011630	0.55	+0.0
2,550,869	+		TX73_011630	0.60	-0.1
2,550,907	-		TX73_011630	0.76	+0.8
2,550,918	+		TX73_011630	0.80	+0.1
2,550,924	-		TX73_011630	0.83	-0.4
2,550,926	-		TX73_011630	0.84	-0.0
2,550,926	-		TX73_011630	0.84	-0.3
2,550,928	-		TX73_011630	0.84	-0.1
2,550,928	-		TX73_011630	0.84	+0.2
2,550,979	-				-0.8
2,550,994	+				+0.0
2,551,005	+				-0.5
2,551,005	+				+0.3
2,551,013	-				+0.7
2,551,013	-				-1.1
2,551,020	-				+1.0
2,551,040	+				-0.8
2,551,072	+				-0.5
2,551,087	-				-1.1
2,551,109	+				+0.0
2,551,114	+				+0.3
2,551,156	+				-0.0
2,551,156	+				+0.7
2,551,157	-				+0.2
2,551,164	-				-0.3
2,551,165	+				-0.0
2,551,171	+				-0.6
2,551,192	-				-1.1
2,551,208	-				-1.1
2,551,222	+				-0.6
2,551,227	+				-0.3
2,551,230	-				+0.0
2,551,235	-				+0.5
2,551,269	+		TX73_011635	0.10	-0.2
2,551,269	+		TX73_011635	0.10	-0.3
2,551,277	-		TX73_011635	0.11	+0.5
2,551,277	-		TX73_011635	0.11	-0.8
2,551,277	-		TX73_011635	0.11	-1.5
2,551,287	-		TX73_011635	0.11	-0.7
2,551,305	+		TX73_011635	0.12	+0.2
2,551,305	+		TX73_011635	0.12	+0.2
2,551,305	+		TX73_011635	0.12	+0.0
2,551,313	-		TX73_011635	0.12	-0.5
2,551,313	-		TX73_011635	0.12	+0.2
2,551,321	-		TX73_011635	0.13	+0.1
2,551,386	+		TX73_011635	0.16	-0.1
2,551,389	-		TX73_011635	0.16	+1.9
2,551,389	-		TX73_011635	0.16	+0.2
2,551,414	+		TX73_011635	0.17	-0.4
2,551,422	-		TX73_011635	0.18	-0.5
2,551,440	-		TX73_011635	0.18	-1.1
2,551,458	-		TX73_011635	0.19	-1.2
2,551,462	+		TX73_011635	0.19	-1.8
2,551,496	+		TX73_011635	0.21	-0.8
2,551,506	+		TX73_011635	0.22	-0.1
2,551,506	+		TX73_011635	0.22	+0.3
2,551,509	-		TX73_011635	0.22	+0.1
2,551,511	+		TX73_011635	0.22	-0.2
2,551,523	+		TX73_011635	0.22	-0.4
2,551,532	+		TX73_011635	0.23	-0.3
2,551,545	-		TX73_011635	0.23	-1.0
2,551,559	+		TX73_011635	0.24	-0.7
2,551,559	+		TX73_011635	0.24	-1.9
2,551,560	+		TX73_011635	0.24	-0.3
2,551,590	-		TX73_011635	0.26	-0.5
2,551,599	+		TX73_011635	0.26	-0.8
2,551,607	-		TX73_011635	0.26	+0.8
2,551,633	-		TX73_011635	0.28	-0.1
2,551,643	-		TX73_011635	0.28	+1.5
2,551,658	+		TX73_011635	0.29	-0.1
2,551,692	-		TX73_011635	0.30	+1.8
2,551,697	-		TX73_011635	0.31	+0.1
2,551,728	-		TX73_011635	0.32	+0.1
2,551,729	-		TX73_011635	0.32	-0.7
2,551,732	+		TX73_011635	0.32	-1.0
2,551,746	+		TX73_011635	0.33	-1.8
2,551,761	-		TX73_011635	0.34	-0.6
2,551,823	-		TX73_011635	0.37	+0.2
2,551,848	-		TX73_011635	0.38	+0.4
2,551,873	-		TX73_011635	0.39	-0.1
2,551,873	-		TX73_011635	0.39	+0.8
2,551,911	-		TX73_011635	0.41	+0.5
2,551,954	+		TX73_011635	0.43	-0.1