Experiment: PM with succinate anaerobic with light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_006935 and TX73_006940 are separated by 4 nucleotides TX73_006940 and TX73_006945 are separated by 14 nucleotides TX73_006945 and TX73_006950 overlap by 4 nucleotides
TX73_006935: TX73_006935 - DUF2341 domain-containing protein, at 1,495,958 to 1,497,985
_006935
TX73_006940: TX73_006940 - biopolymer transporter ExbD, at 1,497,990 to 1,498,394
_006940
TX73_006945: TX73_006945 - hypothetical protein, at 1,498,409 to 1,498,888
_006945
TX73_006950: TX73_006950 - TonB C-terminal domain-containing protein, at 1,498,885 to 1,499,625
_006950
Position (kb) 1497
1498
1499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1497.028 kb on + strand, within TX73_006935 at 1497.063 kb on + strand, within TX73_006935 at 1497.173 kb on - strand, within TX73_006935 at 1497.281 kb on - strand, within TX73_006935 at 1497.305 kb on + strand, within TX73_006935 at 1497.325 kb on + strand, within TX73_006935 at 1497.376 kb on + strand, within TX73_006935 at 1497.376 kb on + strand, within TX73_006935 at 1497.482 kb on + strand, within TX73_006935 at 1497.561 kb on - strand, within TX73_006935 at 1497.659 kb on + strand, within TX73_006935 at 1497.690 kb on + strand, within TX73_006935 at 1497.690 kb on + strand, within TX73_006935 at 1497.794 kb on + strand at 1497.926 kb on + strand at 1497.940 kb on - strand at 1497.980 kb on + strand at 1497.993 kb on - strand at 1498.015 kb on - strand at 1498.098 kb on + strand, within TX73_006940 at 1498.098 kb on + strand, within TX73_006940 at 1498.111 kb on - strand, within TX73_006940 at 1498.228 kb on + strand, within TX73_006940 at 1498.231 kb on - strand, within TX73_006940 at 1498.236 kb on - strand, within TX73_006940 at 1498.303 kb on + strand, within TX73_006940 at 1498.315 kb on - strand, within TX73_006940 at 1498.315 kb on - strand, within TX73_006940 at 1498.317 kb on + strand, within TX73_006940 at 1498.348 kb on - strand, within TX73_006940 at 1498.354 kb on - strand at 1498.356 kb on + strand at 1498.364 kb on - strand at 1498.451 kb on + strand at 1498.487 kb on + strand, within TX73_006945 at 1498.487 kb on + strand, within TX73_006945 at 1498.662 kb on - strand, within TX73_006945 at 1498.676 kb on + strand, within TX73_006945 at 1498.678 kb on + strand, within TX73_006945 at 1498.747 kb on + strand, within TX73_006945 at 1498.854 kb on + strand at 1498.857 kb on - strand at 1498.922 kb on - strand at 1499.161 kb on + strand, within TX73_006950 at 1499.238 kb on + strand, within TX73_006950 at 1499.285 kb on + strand, within TX73_006950 at 1499.293 kb on - strand, within TX73_006950
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate anaerobic with light remove 1,497,028 + TX73_006935 0.53 -0.1 1,497,063 + TX73_006935 0.54 +0.6 1,497,173 - TX73_006935 0.60 +0.8 1,497,281 - TX73_006935 0.65 -0.2 1,497,305 + TX73_006935 0.66 -0.5 1,497,325 + TX73_006935 0.67 +0.8 1,497,376 + TX73_006935 0.70 -0.6 1,497,376 + TX73_006935 0.70 -0.9 1,497,482 + TX73_006935 0.75 -1.0 1,497,561 - TX73_006935 0.79 +1.1 1,497,659 + TX73_006935 0.84 -0.1 1,497,690 + TX73_006935 0.85 -0.7 1,497,690 + TX73_006935 0.85 +0.3 1,497,794 + -1.0 1,497,926 + -0.5 1,497,940 - +0.4 1,497,980 + -0.1 1,497,993 - -0.8 1,498,015 - +1.2 1,498,098 + TX73_006940 0.27 -1.6 1,498,098 + TX73_006940 0.27 +0.3 1,498,111 - TX73_006940 0.30 -1.1 1,498,228 + TX73_006940 0.59 -2.8 1,498,231 - TX73_006940 0.60 -1.2 1,498,236 - TX73_006940 0.61 +0.1 1,498,303 + TX73_006940 0.77 -0.6 1,498,315 - TX73_006940 0.80 -1.1 1,498,315 - TX73_006940 0.80 +0.6 1,498,317 + TX73_006940 0.81 +0.2 1,498,348 - TX73_006940 0.88 -0.5 1,498,354 - +1.1 1,498,356 + +1.6 1,498,364 - -0.4 1,498,451 + -0.4 1,498,487 + TX73_006945 0.16 -0.1 1,498,487 + TX73_006945 0.16 +0.0 1,498,662 - TX73_006945 0.53 -0.4 1,498,676 + TX73_006945 0.56 -0.6 1,498,678 + TX73_006945 0.56 -0.2 1,498,747 + TX73_006945 0.70 +0.2 1,498,854 + -0.5 1,498,857 - -0.4 1,498,922 - +2.2 1,499,161 + TX73_006950 0.37 +1.0 1,499,238 + TX73_006950 0.48 +0.6 1,499,285 + TX73_006950 0.54 -0.8 1,499,293 - TX73_006950 0.55 -0.4
Or see this region's nucleotide sequence