Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_005485

Experiment: PM with succinate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate anaerobic with light
1,176,222	-				-1.5
1,176,225	+				-1.2
1,176,290	-		TX73_005475	0.11	+0.1
1,176,305	+		TX73_005475	0.14	+0.0
1,176,315	+		TX73_005475	0.15	-0.3
1,176,315	+		TX73_005475	0.15	-0.2
1,176,344	+		TX73_005475	0.20	+0.0
1,176,350	+		TX73_005475	0.21	-0.9
1,176,352	-		TX73_005475	0.21	+0.2
1,176,355	+		TX73_005475	0.22	+0.2
1,176,386	-		TX73_005475	0.27	-0.1
1,176,407	+		TX73_005475	0.30	+0.5
1,176,412	+		TX73_005475	0.31	+0.1
1,176,436	-		TX73_005475	0.35	-2.2
1,176,441	-		TX73_005475	0.36	-0.3
1,176,455	+		TX73_005475	0.38	-0.1
1,176,460	+		TX73_005475	0.39	+0.6
1,176,496	+		TX73_005475	0.45	+0.4
1,176,518	+		TX73_005475	0.48	+0.5
1,176,526	-		TX73_005475	0.50	+1.5
1,176,526	-		TX73_005475	0.50	+0.0
1,176,527	+		TX73_005475	0.50	-0.1
1,176,527	+		TX73_005475	0.50	-0.8
1,176,544	+		TX73_005475	0.52	+0.7
1,176,563	+		TX73_005475	0.56	+0.3
1,176,563	+		TX73_005475	0.56	+0.1
1,176,563	+		TX73_005475	0.56	+0.5
1,176,563	+		TX73_005475	0.56	+0.0
1,176,593	+		TX73_005475	0.60	+0.3
1,176,617	+		TX73_005475	0.64	+0.1
1,176,639	+		TX73_005475	0.68	+0.3
1,176,639	-		TX73_005475	0.68	+0.4
1,176,643	+		TX73_005475	0.68	+0.8
1,176,661	+		TX73_005475	0.71	+1.6
1,176,664	-		TX73_005475	0.72	-0.5
1,176,676	+		TX73_005475	0.74	+1.8
1,176,679	-		TX73_005475	0.74	-0.3
1,176,684	-		TX73_005475	0.75	+0.1
1,176,706	-		TX73_005475	0.79	-0.5
1,176,706	-		TX73_005475	0.79	+0.4
1,176,711	-		TX73_005475	0.79	+0.1
1,176,718	-		TX73_005475	0.81	-0.1
1,176,794	-				+0.1
1,176,799	+				+0.4
1,176,799	+				+0.1
1,176,806	-				+0.4
1,176,823	-				-0.0
1,176,832	+				-0.3
1,176,832	-				+0.7
1,176,861	+				-0.3
1,176,864	-				+0.1
1,176,864	-				-1.4
1,176,864	-				-0.3
1,176,864	-				+0.2
1,176,869	-				+1.8
1,176,920	+				-0.0
1,176,938	+				-1.0
1,176,938	+				-1.1
1,176,946	-				+0.9
1,176,946	-				-0.4
1,176,984	+				-0.5
1,176,987	-				-1.0
1,176,992	-				+0.6
1,177,017	+				-0.4
1,177,022	+				-0.5
1,177,030	-				-0.9
1,177,030	-				-0.8
1,177,053	+		TX73_005480	0.18	-0.9
1,177,061	-		TX73_005480	0.23	-0.0
1,177,061	-		TX73_005480	0.23	+0.4
1,177,066	+		TX73_005480	0.26	-0.3
1,177,179	-				+0.4
1,177,209	-				+0.3
1,177,209	-				+1.0
1,177,214	+				+0.6
1,177,214	-				-0.1
1,177,224	+				-0.3
1,177,235	-				+0.3
1,177,265	-		TX73_005485	0.11	+0.1
1,177,294	+		TX73_005485	0.16	+0.2
1,177,294	+		TX73_005485	0.16	+0.6
1,177,295	+		TX73_005485	0.16	+0.2
1,177,325	-		TX73_005485	0.20	-0.1
1,177,371	+		TX73_005485	0.27	+0.0
1,177,400	+		TX73_005485	0.32	+0.1
1,177,416	+		TX73_005485	0.34	+0.4
1,177,441	-		TX73_005485	0.38	+0.3
1,177,443	-		TX73_005485	0.38	-0.8
1,177,490	-		TX73_005485	0.45	-0.5
1,177,515	+		TX73_005485	0.49	-0.6
1,177,560	-		TX73_005485	0.56	+0.9
1,177,571	+		TX73_005485	0.58	-0.2
1,177,579	-		TX73_005485	0.59	-0.6
1,177,583	+		TX73_005485	0.60	-1.4
1,177,676	+		TX73_005485	0.74	+0.2
1,177,685	+		TX73_005485	0.75	-0.2
1,177,706	+		TX73_005485	0.78	+0.1
1,177,717	+		TX73_005485	0.80	-1.0
1,177,723	-		TX73_005485	0.81	-0.9
1,177,725	-		TX73_005485	0.81	-0.4
1,177,758	-		TX73_005485	0.86	-0.3
1,177,770	+		TX73_005485	0.88	+0.5
1,177,775	+		TX73_005485	0.89	+0.1
1,177,775	+		TX73_005485	0.89	-0.2
1,177,778	-		TX73_005485	0.89	-0.4
1,177,783	-				-0.6
1,177,797	+				-0.4
1,177,797	+				-0.9
1,177,798	-				+2.0
1,177,802	+				-0.5
1,177,805	-				+0.6
1,177,805	-				-0.7
1,177,805	-				+0.3
1,177,805	-				+0.2
1,177,807	+				+2.4
1,177,807	+				-1.0
1,177,807	+				-0.5
1,177,807	+				+0.6
1,177,807	+				-0.2
1,177,807	+				-1.1
1,177,815	-				+0.2
1,177,815	-				-1.0
1,177,815	-				-0.3
1,177,826	-				-1.7
1,177,844	-				-0.5
1,177,851	-				-0.3
1,177,880	+				+0.2
1,177,888	-				-0.3
1,177,902	+				-0.5
1,177,909	-				+0.3
1,177,928	-				-1.1
1,177,936	-		TX73_005490	0.10	-0.7
1,177,960	+		TX73_005490	0.13	-0.7
1,177,968	-		TX73_005490	0.14	-0.9
1,177,968	-		TX73_005490	0.14	+0.1
1,177,978	-		TX73_005490	0.15	-0.4
1,177,978	-		TX73_005490	0.15	-0.2
1,178,005	+		TX73_005490	0.18	+0.2
1,178,016	+		TX73_005490	0.19	+0.4
1,178,016	+		TX73_005490	0.19	+0.4
1,178,016	+		TX73_005490	0.19	-0.4
1,178,080	+		TX73_005490	0.27	+0.1
1,178,080	+		TX73_005490	0.27	-0.8
1,178,088	-		TX73_005490	0.28	-0.1
1,178,095	+		TX73_005490	0.28	-0.1
1,178,103	-		TX73_005490	0.29	-1.2
1,178,136	+		TX73_005490	0.33	-2.5
1,178,142	-		TX73_005490	0.34	-0.1
1,178,144	-		TX73_005490	0.34	-0.2
1,178,163	+		TX73_005490	0.36	+0.2
1,178,216	-		TX73_005490	0.42	-2.3
1,178,231	+		TX73_005490	0.44	-0.6
1,178,262	+		TX73_005490	0.47	-0.2
1,178,262	-		TX73_005490	0.47	+0.6
1,178,318	-		TX73_005490	0.54	-0.0
1,178,318	-		TX73_005490	0.54	-0.1
1,178,319	-		TX73_005490	0.54	+0.5
1,178,330	+		TX73_005490	0.55	-0.2
1,178,351	-		TX73_005490	0.57	+0.5
1,178,450	+		TX73_005490	0.69	-0.9
1,178,457	-		TX73_005490	0.69	-1.7
1,178,457	-		TX73_005490	0.69	+0.3
1,178,485	-		TX73_005490	0.73	+0.2
1,178,490	-		TX73_005490	0.73	+1.1
1,178,492	-		TX73_005490	0.73	+0.6
1,178,504	+		TX73_005490	0.75	+0.2
1,178,575	+		TX73_005490	0.83	-1.7
1,178,575	+		TX73_005490	0.83	-0.5
1,178,575	+		TX73_005490	0.83	+0.1
1,178,599	+		TX73_005490	0.85	+1.3
1,178,600	-		TX73_005490	0.86	+0.1
1,178,607	-		TX73_005490	0.86	-0.7
1,178,621	+		TX73_005490	0.88	+0.2
1,178,621	+		TX73_005490	0.88	-0.7
1,178,623	-		TX73_005490	0.88	-0.1
1,178,626	+		TX73_005490	0.89	-0.3
1,178,626	+		TX73_005490	0.89	-0.7
1,178,631	+		TX73_005490	0.89	-0.1
1,178,634	-		TX73_005490	0.89	+0.4
1,178,634	-		TX73_005490	0.89	-1.1
1,178,639	-				-0.2
1,178,655	+				+1.1
1,178,672	+				-0.7
1,178,672	+				+0.5
1,178,680	-				-0.5
1,178,680	-				-1.8
1,178,685	+				+0.1
1,178,717	-				-0.1
1,178,723	+				+0.6
1,178,723	+				-0.6
1,178,737	-				+0.7
1,178,757	+				-0.2
1,178,779	+				-0.7
1,178,816	+				-0.3
1,178,823	+				-0.8
1,178,824	-				-0.0
1,178,824	-				+0.4
1,178,824	-				-0.3
1,178,826	+				-0.1