Experiment: PM with succinate anaerobic with light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003815 and TX73_003820 are separated by 144 nucleotides TX73_003820 and TX73_003825 are separated by 74 nucleotides
TX73_003815: TX73_003815 - PQQ-dependent sugar dehydrogenase, at 814,055 to 815,308
_003815
TX73_003820: TX73_003820 - c-type cytochrome, at 815,453 to 816,043
_003820
TX73_003825: TX73_003825 - acyl-CoA dehydrogenase, at 816,118 to 817,227
_003825
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1 at 814.460 kb on - strand, within TX73_003815 at 814.539 kb on + strand, within TX73_003815 at 814.587 kb on - strand, within TX73_003815 at 814.679 kb on + strand, within TX73_003815 at 814.723 kb on - strand, within TX73_003815 at 814.955 kb on + strand, within TX73_003815 at 814.960 kb on + strand, within TX73_003815 at 815.000 kb on + strand, within TX73_003815 at 815.052 kb on - strand, within TX73_003815 at 815.107 kb on + strand, within TX73_003815 at 815.130 kb on - strand, within TX73_003815 at 815.164 kb on + strand, within TX73_003815 at 815.165 kb on - strand, within TX73_003815 at 815.188 kb on + strand at 815.203 kb on + strand at 815.320 kb on + strand at 815.328 kb on - strand at 815.427 kb on + strand at 815.544 kb on - strand, within TX73_003820 at 815.544 kb on - strand, within TX73_003820 at 815.556 kb on - strand, within TX73_003820 at 815.606 kb on - strand, within TX73_003820 at 815.771 kb on - strand, within TX73_003820 at 815.807 kb on - strand, within TX73_003820 at 815.991 kb on - strand at 816.100 kb on - strand at 816.134 kb on - strand at 816.134 kb on - strand at 816.229 kb on - strand, within TX73_003825 at 816.255 kb on - strand, within TX73_003825 at 816.256 kb on + strand, within TX73_003825 at 816.302 kb on + strand, within TX73_003825 at 816.302 kb on + strand, within TX73_003825 at 816.302 kb on + strand, within TX73_003825 at 816.357 kb on - strand, within TX73_003825 at 816.380 kb on + strand, within TX73_003825 at 816.420 kb on - strand, within TX73_003825 at 816.427 kb on + strand, within TX73_003825 at 816.508 kb on - strand, within TX73_003825 at 816.513 kb on + strand, within TX73_003825 at 816.569 kb on + strand, within TX73_003825 at 816.671 kb on - strand, within TX73_003825 at 816.764 kb on + strand, within TX73_003825 at 816.786 kb on + strand, within TX73_003825 at 816.786 kb on + strand, within TX73_003825 at 816.791 kb on + strand, within TX73_003825 at 816.812 kb on + strand, within TX73_003825 at 816.846 kb on - strand, within TX73_003825 at 816.866 kb on - strand, within TX73_003825 at 816.926 kb on - strand, within TX73_003825 at 816.983 kb on - strand, within TX73_003825 at 817.008 kb on - strand, within TX73_003825 at 817.008 kb on - strand, within TX73_003825
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate anaerobic with light remove 814,460 - TX73_003815 0.32 +0.5 814,539 + TX73_003815 0.39 +1.1 814,587 - TX73_003815 0.42 +0.8 814,679 + TX73_003815 0.50 +0.4 814,723 - TX73_003815 0.53 +0.5 814,955 + TX73_003815 0.72 -0.5 814,960 + TX73_003815 0.72 -0.2 815,000 + TX73_003815 0.75 +0.7 815,052 - TX73_003815 0.80 -0.2 815,107 + TX73_003815 0.84 -0.0 815,130 - TX73_003815 0.86 +0.0 815,164 + TX73_003815 0.88 +0.1 815,165 - TX73_003815 0.89 -0.0 815,188 + -0.4 815,203 + +0.4 815,320 + +0.2 815,328 - +0.2 815,427 + +0.4 815,544 - TX73_003820 0.15 -0.2 815,544 - TX73_003820 0.15 +0.4 815,556 - TX73_003820 0.17 -0.9 815,606 - TX73_003820 0.26 -1.4 815,771 - TX73_003820 0.54 +0.4 815,807 - TX73_003820 0.60 -0.4 815,991 - +0.6 816,100 - -0.5 816,134 - -0.3 816,134 - -0.7 816,229 - TX73_003825 0.10 +0.5 816,255 - TX73_003825 0.12 -0.2 816,256 + TX73_003825 0.12 -0.4 816,302 + TX73_003825 0.17 -1.9 816,302 + TX73_003825 0.17 +0.7 816,302 + TX73_003825 0.17 -0.4 816,357 - TX73_003825 0.22 -1.0 816,380 + TX73_003825 0.24 +0.4 816,420 - TX73_003825 0.27 +0.3 816,427 + TX73_003825 0.28 +0.1 816,508 - TX73_003825 0.35 +0.6 816,513 + TX73_003825 0.36 +0.1 816,569 + TX73_003825 0.41 -1.0 816,671 - TX73_003825 0.50 -0.0 816,764 + TX73_003825 0.58 +0.4 816,786 + TX73_003825 0.60 +0.0 816,786 + TX73_003825 0.60 +1.5 816,791 + TX73_003825 0.61 +1.5 816,812 + TX73_003825 0.63 +0.1 816,846 - TX73_003825 0.66 -0.2 816,866 - TX73_003825 0.67 +0.4 816,926 - TX73_003825 0.73 -0.6 816,983 - TX73_003825 0.78 -0.0 817,008 - TX73_003825 0.80 -0.5 817,008 - TX73_003825 0.80 -0.8
Or see this region's nucleotide sequence