Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003545

Experiment: PM with succinate anaerobic with light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_003535 and TX73_003540 are separated by 7 nucleotidesTX73_003540 and TX73_003545 are separated by 142 nucleotidesTX73_003545 and TX73_003550 are separated by 160 nucleotides TX73_003535: TX73_003535 - ABC transporter permease, at 759,605 to 760,732 _003535 TX73_003540: TX73_003540 - hypothetical protein, at 760,740 to 760,919 _003540 TX73_003545: TX73_003545 - IclR family transcriptional regulator, at 761,062 to 761,937 _003545 TX73_003550: TX73_003550 - tripartite tricarboxylate transporter substrate binding protein, at 762,098 to 763,072 _003550 Position (kb) 761 762Strain fitness (log2 ratio) -2 -1 0 1at 760.066 kb on - strand, within TX73_003535at 760.139 kb on - strand, within TX73_003535at 760.271 kb on - strand, within TX73_003535at 760.293 kb on + strand, within TX73_003535at 760.344 kb on - strand, within TX73_003535at 760.344 kb on - strand, within TX73_003535at 760.363 kb on + strand, within TX73_003535at 760.384 kb on - strand, within TX73_003535at 760.387 kb on - strand, within TX73_003535at 760.390 kb on + strand, within TX73_003535at 760.455 kb on - strand, within TX73_003535at 760.528 kb on + strand, within TX73_003535at 760.607 kb on + strand, within TX73_003535at 760.615 kb on - strand, within TX73_003535at 760.615 kb on - strand, within TX73_003535at 760.626 kb on + strandat 760.626 kb on + strandat 760.634 kb on - strandat 760.636 kb on + strandat 760.642 kb on + strandat 760.644 kb on - strandat 760.644 kb on - strandat 760.644 kb on - strandat 760.657 kb on - strandat 760.700 kb on - strandat 760.700 kb on - strandat 760.721 kb on + strandat 760.758 kb on - strand, within TX73_003540at 760.763 kb on - strand, within TX73_003540at 760.763 kb on - strand, within TX73_003540at 760.768 kb on + strand, within TX73_003540at 760.781 kb on + strand, within TX73_003540at 760.789 kb on - strand, within TX73_003540at 760.831 kb on + strand, within TX73_003540at 760.854 kb on + strand, within TX73_003540at 760.857 kb on - strand, within TX73_003540at 761.042 kb on - strandat 761.066 kb on + strandat 761.098 kb on - strandat 761.140 kb on + strandat 761.146 kb on - strandat 761.171 kb on + strand, within TX73_003545at 761.179 kb on - strand, within TX73_003545at 761.181 kb on + strand, within TX73_003545at 761.198 kb on + strand, within TX73_003545at 761.198 kb on + strand, within TX73_003545at 761.198 kb on - strand, within TX73_003545at 761.203 kb on + strand, within TX73_003545at 761.211 kb on - strand, within TX73_003545at 761.221 kb on - strand, within TX73_003545at 761.243 kb on + strand, within TX73_003545at 761.258 kb on - strand, within TX73_003545at 761.269 kb on + strand, within TX73_003545at 761.276 kb on - strand, within TX73_003545at 761.291 kb on + strand, within TX73_003545at 761.296 kb on - strand, within TX73_003545at 761.369 kb on + strand, within TX73_003545at 761.386 kb on + strand, within TX73_003545at 761.415 kb on + strand, within TX73_003545at 761.423 kb on - strand, within TX73_003545at 761.423 kb on - strand, within TX73_003545at 761.423 kb on - strand, within TX73_003545at 761.423 kb on - strand, within TX73_003545at 761.425 kb on + strand, within TX73_003545at 761.440 kb on - strand, within TX73_003545at 761.440 kb on - strand, within TX73_003545at 761.440 kb on - strand, within TX73_003545at 761.440 kb on - strand, within TX73_003545at 761.467 kb on - strand, within TX73_003545at 761.469 kb on + strand, within TX73_003545at 761.475 kb on + strand, within TX73_003545at 761.477 kb on - strand, within TX73_003545at 761.483 kb on - strand, within TX73_003545at 761.508 kb on + strand, within TX73_003545at 761.559 kb on - strand, within TX73_003545at 761.592 kb on + strand, within TX73_003545at 761.694 kb on + strand, within TX73_003545at 761.789 kb on - strand, within TX73_003545at 761.868 kb on - strandat 761.870 kb on - strandat 761.883 kb on - strandat 761.902 kb on - strandat 761.925 kb on - strandat 762.009 kb on + strandat 762.015 kb on - strandat 762.015 kb on - strandat 762.054 kb on + strandat 762.071 kb on - strandat 762.088 kb on - strandat 762.106 kb on + strandat 762.124 kb on + strandat 762.132 kb on - strandat 762.132 kb on - strandat 762.173 kb on + strandat 762.191 kb on - strandat 762.219 kb on - strand, within TX73_003550at 762.289 kb on + strand, within TX73_003550at 762.310 kb on - strand, within TX73_003550at 762.370 kb on - strand, within TX73_003550at 762.613 kb on - strand, within TX73_003550at 762.621 kb on - strand, within TX73_003550at 762.621 kb on - strand, within TX73_003550at 762.635 kb on + strand, within TX73_003550at 762.675 kb on - strand, within TX73_003550at 762.682 kb on + strand, within TX73_003550at 762.693 kb on - strand, within TX73_003550at 762.720 kb on + strand, within TX73_003550at 762.776 kb on + strand, within TX73_003550at 762.776 kb on + strand, within TX73_003550at 762.784 kb on - strand, within TX73_003550at 762.803 kb on - strand, within TX73_003550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate anaerobic with light
remove
760,066 - TX73_003535 0.41 -0.4
760,139 - TX73_003535 0.47 -1.5
760,271 - TX73_003535 0.59 +0.0
760,293 + TX73_003535 0.61 +1.4
760,344 - TX73_003535 0.66 -0.5
760,344 - TX73_003535 0.66 +0.9
760,363 + TX73_003535 0.67 +0.3
760,384 - TX73_003535 0.69 +1.4
760,387 - TX73_003535 0.69 +0.5
760,390 + TX73_003535 0.70 +0.2
760,455 - TX73_003535 0.75 +0.0
760,528 + TX73_003535 0.82 +0.3
760,607 + TX73_003535 0.89 +0.7
760,615 - TX73_003535 0.90 +0.6
760,615 - TX73_003535 0.90 +0.6
760,626 + -0.5
760,626 + +0.6
760,634 - -0.0
760,636 + +0.3
760,642 + +0.5
760,644 - +0.6
760,644 - -0.1
760,644 - -0.2
760,657 - +1.0
760,700 - -0.1
760,700 - +1.1
760,721 + +0.2
760,758 - TX73_003540 0.10 -0.2
760,763 - TX73_003540 0.13 +0.0
760,763 - TX73_003540 0.13 -0.4
760,768 + TX73_003540 0.16 +0.3
760,781 + TX73_003540 0.23 -0.3
760,789 - TX73_003540 0.27 -0.2
760,831 + TX73_003540 0.51 +0.1
760,854 + TX73_003540 0.63 -0.3
760,857 - TX73_003540 0.65 -0.3
761,042 - +0.0
761,066 + -0.4
761,098 - +0.1
761,140 + +0.4
761,146 - -1.5
761,171 + TX73_003545 0.12 -0.6
761,179 - TX73_003545 0.13 +0.5
761,181 + TX73_003545 0.14 -0.8
761,198 + TX73_003545 0.16 +0.4
761,198 + TX73_003545 0.16 +0.7
761,198 - TX73_003545 0.16 +0.9
761,203 + TX73_003545 0.16 +0.5
761,211 - TX73_003545 0.17 +1.0
761,221 - TX73_003545 0.18 +1.4
761,243 + TX73_003545 0.21 +0.2
761,258 - TX73_003545 0.22 +0.1
761,269 + TX73_003545 0.24 -0.0
761,276 - TX73_003545 0.24 +0.1
761,291 + TX73_003545 0.26 +0.7
761,296 - TX73_003545 0.27 -1.0
761,369 + TX73_003545 0.35 -0.3
761,386 + TX73_003545 0.37 -0.4
761,415 + TX73_003545 0.40 -0.4
761,423 - TX73_003545 0.41 -0.4
761,423 - TX73_003545 0.41 +0.2
761,423 - TX73_003545 0.41 +0.9
761,423 - TX73_003545 0.41 +0.0
761,425 + TX73_003545 0.41 +0.4
761,440 - TX73_003545 0.43 +0.8
761,440 - TX73_003545 0.43 -0.0
761,440 - TX73_003545 0.43 +1.0
761,440 - TX73_003545 0.43 -0.3
761,467 - TX73_003545 0.46 +0.1
761,469 + TX73_003545 0.46 +0.4
761,475 + TX73_003545 0.47 +0.6
761,477 - TX73_003545 0.47 -0.0
761,483 - TX73_003545 0.48 +1.1
761,508 + TX73_003545 0.51 -0.1
761,559 - TX73_003545 0.57 -0.5
761,592 + TX73_003545 0.61 +0.2
761,694 + TX73_003545 0.72 +0.6
761,789 - TX73_003545 0.83 -0.6
761,868 - -0.7
761,870 - -1.1
761,883 - +0.7
761,902 - +0.1
761,925 - -0.4
762,009 + -0.7
762,015 - +0.2
762,015 - +0.1
762,054 + +0.4
762,071 - -0.3
762,088 - -1.0
762,106 + -0.1
762,124 + -0.2
762,132 - -1.2
762,132 - +0.1
762,173 + -0.1
762,191 - -2.5
762,219 - TX73_003550 0.12 -0.2
762,289 + TX73_003550 0.20 -0.1
762,310 - TX73_003550 0.22 -1.9
762,370 - TX73_003550 0.28 +0.7
762,613 - TX73_003550 0.53 -0.4
762,621 - TX73_003550 0.54 -0.9
762,621 - TX73_003550 0.54 -1.3
762,635 + TX73_003550 0.55 -0.3
762,675 - TX73_003550 0.59 -0.3
762,682 + TX73_003550 0.60 -0.4
762,693 - TX73_003550 0.61 -0.5
762,720 + TX73_003550 0.64 +0.4
762,776 + TX73_003550 0.70 +0.0
762,776 + TX73_003550 0.70 +0.9
762,784 - TX73_003550 0.70 -0.5
762,803 - TX73_003550 0.72 -0.2

Or see this region's nucleotide sequence