Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000560

Experiment: PM with succinate anaerobic with light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000555 and TX73_000560 are separated by 40 nucleotidesTX73_000560 and TX73_000565 overlap by 49 nucleotidesTX73_000565 and TX73_000570 are separated by 52 nucleotides TX73_000555: TX73_000555 - thiamine pyrophosphate-binding protein, at 123,611 to 125,359 _000555 TX73_000560: TX73_000560 - SDR family NAD(P)-dependent oxidoreductase, at 125,400 to 126,287 _000560 TX73_000565: TX73_000565 - TetR/AcrR family transcriptional regulator, at 126,239 to 127,051 _000565 TX73_000570: TX73_000570 - sulfite exporter TauE/SafE family protein, at 127,104 to 127,904 _000570 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 124.447 kb on + strand, within TX73_000555at 124.479 kb on + strand, within TX73_000555at 124.503 kb on - strand, within TX73_000555at 124.640 kb on - strand, within TX73_000555at 124.647 kb on + strand, within TX73_000555at 124.655 kb on - strand, within TX73_000555at 124.693 kb on + strand, within TX73_000555at 124.749 kb on + strand, within TX73_000555at 124.749 kb on + strand, within TX73_000555at 124.757 kb on - strand, within TX73_000555at 124.847 kb on + strand, within TX73_000555at 124.854 kb on + strand, within TX73_000555at 124.878 kb on - strand, within TX73_000555at 124.915 kb on + strand, within TX73_000555at 124.923 kb on - strand, within TX73_000555at 124.994 kb on + strand, within TX73_000555at 125.002 kb on - strand, within TX73_000555at 125.050 kb on + strand, within TX73_000555at 125.069 kb on - strand, within TX73_000555at 125.296 kb on + strandat 125.304 kb on - strandat 125.328 kb on - strandat 125.380 kb on + strandat 125.393 kb on - strandat 125.398 kb on + strandat 125.398 kb on + strandat 125.406 kb on - strandat 125.510 kb on + strand, within TX73_000560at 125.591 kb on + strand, within TX73_000560at 125.609 kb on + strand, within TX73_000560at 125.617 kb on - strand, within TX73_000560at 125.617 kb on - strand, within TX73_000560at 125.624 kb on + strand, within TX73_000560at 125.636 kb on + strand, within TX73_000560at 125.644 kb on - strand, within TX73_000560at 125.725 kb on + strand, within TX73_000560at 125.727 kb on + strand, within TX73_000560at 125.735 kb on - strand, within TX73_000560at 125.778 kb on + strand, within TX73_000560at 125.876 kb on - strand, within TX73_000560at 125.882 kb on - strand, within TX73_000560at 125.888 kb on + strand, within TX73_000560at 126.005 kb on - strand, within TX73_000560at 126.014 kb on - strand, within TX73_000560at 126.034 kb on - strand, within TX73_000560at 126.068 kb on - strand, within TX73_000560at 126.108 kb on - strand, within TX73_000560at 126.157 kb on - strand, within TX73_000560at 126.202 kb on + strandat 126.210 kb on - strandat 126.239 kb on - strandat 126.296 kb on - strandat 126.308 kb on - strandat 126.342 kb on - strand, within TX73_000565at 126.342 kb on - strand, within TX73_000565at 126.378 kb on + strand, within TX73_000565at 126.378 kb on + strand, within TX73_000565at 126.386 kb on - strand, within TX73_000565at 126.386 kb on - strand, within TX73_000565at 126.391 kb on - strand, within TX73_000565at 126.419 kb on - strand, within TX73_000565at 126.422 kb on + strand, within TX73_000565at 126.511 kb on + strand, within TX73_000565at 126.543 kb on + strand, within TX73_000565at 126.543 kb on + strand, within TX73_000565at 126.603 kb on + strand, within TX73_000565at 126.603 kb on + strand, within TX73_000565at 126.605 kb on + strand, within TX73_000565at 126.605 kb on + strand, within TX73_000565at 126.605 kb on + strand, within TX73_000565at 126.605 kb on + strand, within TX73_000565at 126.605 kb on + strand, within TX73_000565at 126.613 kb on - strand, within TX73_000565at 126.613 kb on - strand, within TX73_000565at 126.722 kb on + strand, within TX73_000565at 126.753 kb on + strand, within TX73_000565at 126.782 kb on + strand, within TX73_000565at 126.796 kb on - strand, within TX73_000565at 126.803 kb on + strand, within TX73_000565at 126.808 kb on + strand, within TX73_000565at 126.818 kb on - strand, within TX73_000565at 126.846 kb on + strand, within TX73_000565at 127.046 kb on + strandat 127.119 kb on - strandat 127.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate anaerobic with light
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124,447 + TX73_000555 0.48 +0.0
124,479 + TX73_000555 0.50 -1.4
124,503 - TX73_000555 0.51 +0.7
124,640 - TX73_000555 0.59 -0.8
124,647 + TX73_000555 0.59 -0.1
124,655 - TX73_000555 0.60 +0.1
124,693 + TX73_000555 0.62 +0.8
124,749 + TX73_000555 0.65 -0.4
124,749 + TX73_000555 0.65 +1.1
124,757 - TX73_000555 0.66 +0.7
124,847 + TX73_000555 0.71 -1.0
124,854 + TX73_000555 0.71 +0.3
124,878 - TX73_000555 0.72 -0.0
124,915 + TX73_000555 0.75 -2.4
124,923 - TX73_000555 0.75 -0.6
124,994 + TX73_000555 0.79 -0.2
125,002 - TX73_000555 0.80 +0.1
125,050 + TX73_000555 0.82 +0.0
125,069 - TX73_000555 0.83 +0.5
125,296 + +1.0
125,304 - +2.3
125,328 - +0.3
125,380 + +1.1
125,393 - +0.6
125,398 + +0.3
125,398 + -0.0
125,406 - -0.4
125,510 + TX73_000560 0.12 +0.1
125,591 + TX73_000560 0.22 -0.1
125,609 + TX73_000560 0.24 +0.6
125,617 - TX73_000560 0.24 +0.5
125,617 - TX73_000560 0.24 +0.6
125,624 + TX73_000560 0.25 -0.9
125,636 + TX73_000560 0.27 -0.4
125,644 - TX73_000560 0.27 +0.1
125,725 + TX73_000560 0.37 +0.0
125,727 + TX73_000560 0.37 +0.1
125,735 - TX73_000560 0.38 +0.6
125,778 + TX73_000560 0.43 -1.7
125,876 - TX73_000560 0.54 +2.0
125,882 - TX73_000560 0.54 +0.4
125,888 + TX73_000560 0.55 -0.2
126,005 - TX73_000560 0.68 -1.5
126,014 - TX73_000560 0.69 +0.5
126,034 - TX73_000560 0.71 +0.4
126,068 - TX73_000560 0.75 -0.8
126,108 - TX73_000560 0.80 +1.1
126,157 - TX73_000560 0.85 +0.1
126,202 + +0.8
126,210 - -0.8
126,239 - +0.3
126,296 - +0.8
126,308 - +0.4
126,342 - TX73_000565 0.13 +0.2
126,342 - TX73_000565 0.13 -1.4
126,378 + TX73_000565 0.17 +0.0
126,378 + TX73_000565 0.17 +0.5
126,386 - TX73_000565 0.18 +0.7
126,386 - TX73_000565 0.18 +1.2
126,391 - TX73_000565 0.19 +0.2
126,419 - TX73_000565 0.22 -1.9
126,422 + TX73_000565 0.23 +0.6
126,511 + TX73_000565 0.33 +0.3
126,543 + TX73_000565 0.37 -0.1
126,543 + TX73_000565 0.37 -0.1
126,603 + TX73_000565 0.45 +1.0
126,603 + TX73_000565 0.45 +0.6
126,605 + TX73_000565 0.45 +0.8
126,605 + TX73_000565 0.45 +0.1
126,605 + TX73_000565 0.45 +0.7
126,605 + TX73_000565 0.45 +0.2
126,605 + TX73_000565 0.45 +0.6
126,613 - TX73_000565 0.46 +0.5
126,613 - TX73_000565 0.46 -0.3
126,722 + TX73_000565 0.59 -0.2
126,753 + TX73_000565 0.63 +1.9
126,782 + TX73_000565 0.67 +1.0
126,796 - TX73_000565 0.69 +0.5
126,803 + TX73_000565 0.69 -1.2
126,808 + TX73_000565 0.70 +0.6
126,818 - TX73_000565 0.71 +0.2
126,846 + TX73_000565 0.75 +0.4
127,046 + -0.2
127,119 - +0.6
127,142 - -0.6

Or see this region's nucleotide sequence