Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020005

Experiment: PM with succinate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate anaerobic with light
4,361,970	-				-0.7
4,361,981	-		TX73_019995	0.14	-0.7
4,361,982	+		TX73_019995	0.15	+0.6
4,362,034	+		TX73_019995	0.42	-0.2
4,362,048	-		TX73_019995	0.50	-0.7
4,362,060	+		TX73_019995	0.56	+0.2
4,362,070	+		TX73_019995	0.61	+0.5
4,362,094	-		TX73_019995	0.74	-0.3
4,362,095	-		TX73_019995	0.75	-0.6
4,362,100	-		TX73_019995	0.77	+0.4
4,362,112	+		TX73_019995	0.84	-0.5
4,362,116	+		TX73_019995	0.86	-0.0
4,362,125	-				-0.5
4,362,283	+				-0.1
4,362,290	-				+0.4
4,362,335	+				-0.3
4,362,352	+				-0.5
4,362,433	+				-0.2
4,362,469	-		TX73_020000	0.22	+0.3
4,362,497	+		TX73_020000	0.41	-0.1
4,362,540	+		TX73_020000	0.71	+0.5
4,362,540	+		TX73_020000	0.71	-0.4
4,362,552	-		TX73_020000	0.79	-0.4
4,362,557	-		TX73_020000	0.82	-0.9
4,362,562	-		TX73_020000	0.86	+0.2
4,362,573	-				-0.5
4,362,658	+				-1.2
4,362,658	+				+0.3
4,362,658	+				-0.6
4,362,658	+				-0.9
4,362,658	+				-1.0
4,362,666	-				-1.2
4,362,699	-				-0.6
4,362,708	+				-0.5
4,362,740	-				-0.0
4,362,761	+				+0.1
4,362,761	+				+0.2
4,362,761	+				-0.6
4,362,761	+				-0.2
4,362,761	+				-0.1
4,362,769	-				-0.8
4,362,771	+				+0.4
4,362,787	+				-0.5
4,362,787	+				-0.8
4,362,787	+				+0.1
4,362,792	+				-0.4
4,362,795	-				-0.7
4,362,804	+				-0.3
4,362,806	+				-0.9
4,362,806	+				-0.3
4,362,806	+				+0.4
4,362,806	+				-0.2
4,362,814	-				+0.0
4,362,814	-				-0.6
4,362,859	+				+0.5
4,362,859	+				+0.3
4,362,859	+				-0.9
4,362,859	+				-0.3
4,362,859	+				-0.2
4,362,859	+				+0.2
4,362,859	+				-0.3
4,362,859	+				+0.0
4,362,859	+				-1.4
4,362,859	+				-0.6
4,362,859	+				+0.3
4,362,859	+				+0.6
4,362,859	+				-0.5
4,362,859	+				-0.2
4,362,859	+				+0.5
4,362,867	-				+0.5
4,362,867	-				+0.4
4,362,867	-				-0.3
4,362,867	-				+0.1
4,362,867	-				-0.7
4,362,867	-				-0.5
4,362,867	-				+0.1
4,362,881	+				+0.4
4,362,886	+				-0.0
4,362,886	+				-0.9
4,362,890	-				+0.0
4,362,894	-				-0.7
4,362,894	-				+0.0
4,362,897	+				-0.4
4,362,897	+				-0.0
4,362,905	-				-0.6
4,362,905	-				-0.5
4,362,905	-				+0.2
4,362,920	-				-0.4
4,362,924	-				-0.4
4,362,946	+				-0.3
4,362,946	+				-0.7
4,362,946	+				-0.6
4,362,946	+				+0.2
4,362,952	-				-0.8
4,362,953	-				-0.6
4,362,953	-				-0.1
4,362,954	-				-0.5
4,362,987	-				-0.6
4,362,999	-				+0.9
4,363,020	-		TX73_020005	0.14	-0.5
4,363,027	+		TX73_020005	0.16	-0.5
4,363,032	+		TX73_020005	0.17	-0.7
4,363,035	-		TX73_020005	0.18	+0.5
4,363,035	-		TX73_020005	0.18	-1.3
4,363,035	-		TX73_020005	0.18	-0.3
4,363,074	-		TX73_020005	0.28	-0.7
4,363,084	+		TX73_020005	0.30	-0.2
4,363,084	+		TX73_020005	0.30	+0.9
4,363,084	+		TX73_020005	0.30	-0.1
4,363,146	-		TX73_020005	0.46	-0.1
4,363,152	+		TX73_020005	0.48	-0.8
4,363,154	-		TX73_020005	0.48	-1.7
4,363,159	+		TX73_020005	0.50	-1.1
4,363,160	+		TX73_020005	0.50	-0.9
4,363,168	-		TX73_020005	0.52	+0.1
4,363,173	-		TX73_020005	0.53	+0.4
4,363,196	-		TX73_020005	0.59	-0.4
4,363,219	+		TX73_020005	0.65	+0.0
4,363,219	+		TX73_020005	0.65	-0.2
4,363,227	-		TX73_020005	0.67	-0.0
4,363,232	-		TX73_020005	0.68	-0.5
4,363,234	-		TX73_020005	0.69	+0.6
4,363,234	-		TX73_020005	0.69	+0.8
4,363,236	+		TX73_020005	0.70	+0.9
4,363,244	-		TX73_020005	0.72	-0.5
4,363,263	-		TX73_020005	0.76	+0.1
4,363,279	-		TX73_020005	0.81	-1.3
4,363,287	-		TX73_020005	0.83	-0.5
4,363,290	+		TX73_020005	0.83	-0.1
4,363,330	+				+0.8
4,363,330	+				+0.3
4,363,334	-				-0.1
4,363,338	-				+0.5
4,363,338	-				-0.1
4,363,345	-				+0.0
4,363,362	+				+0.5
4,363,367	+				+0.4
4,363,370	-				-1.3
4,363,372	+				-0.3
4,363,372	+				+0.3
4,363,372	+				-2.1
4,363,372	+				-0.5
4,363,372	+				-0.9
4,363,380	-				-0.0
4,363,380	-				-0.5
4,363,380	-				-1.0
4,363,382	+				-0.6
4,363,549	-				-1.4
4,363,567	-				+0.1
4,363,586	+				-1.9
4,363,586	+				+0.7
4,363,623	+				-1.1
4,363,648	-				-0.4
4,363,652	+				-0.1
4,363,653	+				+0.7
4,363,653	-				+0.1
4,363,653	-				+0.0
4,363,653	-				+0.5
4,363,653	-				+0.2
4,363,661	-		TX73_020010	0.10	-0.1
4,363,674	+		TX73_020010	0.19	-0.3
4,363,684	+		TX73_020010	0.26	-1.2
4,363,684	-		TX73_020010	0.26	-1.6
4,363,694	+		TX73_020010	0.33	-0.4
4,363,694	+		TX73_020010	0.33	+0.3
4,363,694	+		TX73_020010	0.33	-0.6
4,363,697	-		TX73_020010	0.35	-0.5
4,363,697	-		TX73_020010	0.35	-0.2
4,363,699	+		TX73_020010	0.37	-0.5
4,363,702	-		TX73_020010	0.39	-0.2
4,363,702	-		TX73_020010	0.39	-0.0
4,363,702	-		TX73_020010	0.39	-1.0
4,363,707	-		TX73_020010	0.43	-0.2
4,363,712	+		TX73_020010	0.46	-0.3
4,363,712	+		TX73_020010	0.46	-0.3
4,363,717	-		TX73_020010	0.50	-0.3
4,363,720	-		TX73_020010	0.52	-0.2
4,363,806	-				+0.9
4,363,813	+				+0.5
4,363,813	+				+0.1
4,363,819	-				+0.7
4,363,819	-				-1.7
4,363,821	-				-0.5
4,363,821	-				+1.5
4,363,821	-				-0.9
4,363,821	-				+1.0
4,363,828	+				-0.0
4,363,831	-				+0.0
4,363,836	-				-1.2
4,363,836	-				+0.6
4,363,855	-				+0.3
4,363,879	+				+0.3
4,363,887	-				+0.4
4,363,892	-				-0.1
4,363,903	+				+0.1
4,363,908	+				-0.2
4,363,911	-				+0.0
4,363,916	-				+0.5
4,363,923	-				-0.9
4,363,924	+				-0.3
4,363,991	-		TX73_020015	0.19	-0.5
4,363,996	-		TX73_020015	0.20	-0.1
4,364,002	+		TX73_020015	0.21	-0.7
4,364,010	-		TX73_020015	0.22	+0.0
4,364,015	+		TX73_020015	0.23	-0.1
4,364,015	+		TX73_020015	0.23	+0.2
4,364,025	+		TX73_020015	0.24	-0.4
4,364,028	-		TX73_020015	0.25	-0.1
4,364,028	-		TX73_020015	0.25	+0.7
4,364,164	+		TX73_020015	0.45	-0.4
4,364,181	-		TX73_020015	0.48	-0.8
4,364,181	-		TX73_020015	0.48	-0.6
4,364,183	+		TX73_020015	0.48	+0.0
4,364,191	-		TX73_020015	0.49	+0.4
4,364,191	-		TX73_020015	0.49	-0.2
4,364,205	+		TX73_020015	0.51	-0.1
4,364,213	-		TX73_020015	0.53	-0.4
4,364,244	-		TX73_020015	0.57	-0.3
4,364,244	-		TX73_020015	0.57	+0.3
4,364,248	+		TX73_020015	0.58	+0.3
4,364,253	+		TX73_020015	0.59	-0.8
4,364,255	+		TX73_020015	0.59	-0.2
4,364,263	-		TX73_020015	0.60	-0.5
4,364,263	-		TX73_020015	0.60	-0.3
4,364,296	-		TX73_020015	0.65	-0.1
4,364,313	+		TX73_020015	0.68	-0.8
4,364,347	+		TX73_020015	0.73	-0.1
4,364,347	+		TX73_020015	0.73	+0.0
4,364,347	+		TX73_020015	0.73	-0.6
4,364,347	+		TX73_020015	0.73	-2.8
4,364,347	+		TX73_020015	0.73	-0.1
4,364,347	+		TX73_020015	0.73	-0.4
4,364,347	+		TX73_020015	0.73	+0.0
4,364,347	+		TX73_020015	0.73	+0.0
4,364,347	+		TX73_020015	0.73	-0.4
4,364,352	+		TX73_020015	0.73	-0.5