Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019125

Experiment: PM with succinate anaerobic with light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_019120 and TX73_019125 are separated by 1 nucleotidesTX73_019125 and TX73_019130 are separated by 14 nucleotides TX73_019120: TX73_019120 - microcin C ABC transporter permease YejB, at 4,163,621 to 4,164,730 _019120 TX73_019125: TX73_019125 - extracellular solute-binding protein, at 4,164,732 to 4,166,597 _019125 TX73_019130: TX73_019130 - extracellular solute-binding protein, at 4,166,612 to 4,168,507 _019130 Position (kb) 4164 4165 4166 4167Strain fitness (log2 ratio) -2 -1 0 1 2at 4163.776 kb on + strand, within TX73_019120at 4163.784 kb on - strand, within TX73_019120at 4163.784 kb on - strand, within TX73_019120at 4163.806 kb on + strand, within TX73_019120at 4163.912 kb on - strand, within TX73_019120at 4163.930 kb on - strand, within TX73_019120at 4163.937 kb on + strand, within TX73_019120at 4163.989 kb on + strand, within TX73_019120at 4164.143 kb on + strand, within TX73_019120at 4164.148 kb on - strand, within TX73_019120at 4164.197 kb on + strand, within TX73_019120at 4164.244 kb on - strand, within TX73_019120at 4164.244 kb on - strand, within TX73_019120at 4164.244 kb on - strand, within TX73_019120at 4164.281 kb on + strand, within TX73_019120at 4164.281 kb on + strand, within TX73_019120at 4164.289 kb on - strand, within TX73_019120at 4164.330 kb on + strand, within TX73_019120at 4164.401 kb on - strand, within TX73_019120at 4164.477 kb on - strand, within TX73_019120at 4164.484 kb on + strand, within TX73_019120at 4164.490 kb on - strand, within TX73_019120at 4164.723 kb on - strandat 4164.779 kb on + strandat 4164.782 kb on - strandat 4164.789 kb on + strandat 4164.841 kb on - strandat 4164.856 kb on - strandat 4164.867 kb on + strandat 4164.892 kb on + strandat 4164.900 kb on - strandat 4164.942 kb on + strand, within TX73_019125at 4164.977 kb on + strand, within TX73_019125at 4165.072 kb on + strand, within TX73_019125at 4165.078 kb on + strand, within TX73_019125at 4165.139 kb on - strand, within TX73_019125at 4165.141 kb on + strand, within TX73_019125at 4165.151 kb on + strand, within TX73_019125at 4165.159 kb on - strand, within TX73_019125at 4165.168 kb on + strand, within TX73_019125at 4165.185 kb on - strand, within TX73_019125at 4165.185 kb on - strand, within TX73_019125at 4165.274 kb on - strand, within TX73_019125at 4165.341 kb on + strand, within TX73_019125at 4165.341 kb on + strand, within TX73_019125at 4165.341 kb on + strand, within TX73_019125at 4165.341 kb on + strand, within TX73_019125at 4165.341 kb on + strand, within TX73_019125at 4165.341 kb on + strand, within TX73_019125at 4165.341 kb on + strand, within TX73_019125at 4165.346 kb on + strand, within TX73_019125at 4165.349 kb on - strand, within TX73_019125at 4165.354 kb on - strand, within TX73_019125at 4165.377 kb on - strand, within TX73_019125at 4165.381 kb on + strand, within TX73_019125at 4165.389 kb on - strand, within TX73_019125at 4165.403 kb on - strand, within TX73_019125at 4165.422 kb on + strand, within TX73_019125at 4165.425 kb on - strand, within TX73_019125at 4165.427 kb on + strand, within TX73_019125at 4165.504 kb on + strand, within TX73_019125at 4165.559 kb on - strand, within TX73_019125at 4165.584 kb on - strand, within TX73_019125at 4165.604 kb on - strand, within TX73_019125at 4165.606 kb on + strand, within TX73_019125at 4165.629 kb on - strand, within TX73_019125at 4165.653 kb on - strand, within TX73_019125at 4165.665 kb on + strand, within TX73_019125at 4165.665 kb on + strand, within TX73_019125at 4165.673 kb on - strand, within TX73_019125at 4165.675 kb on - strand, within TX73_019125at 4165.735 kb on - strand, within TX73_019125at 4165.751 kb on - strand, within TX73_019125at 4165.803 kb on - strand, within TX73_019125at 4165.835 kb on + strand, within TX73_019125at 4165.846 kb on + strand, within TX73_019125at 4165.846 kb on + strand, within TX73_019125at 4165.846 kb on + strand, within TX73_019125at 4165.846 kb on + strand, within TX73_019125at 4165.899 kb on + strand, within TX73_019125at 4165.902 kb on - strand, within TX73_019125at 4165.912 kb on - strand, within TX73_019125at 4165.917 kb on - strand, within TX73_019125at 4165.995 kb on + strand, within TX73_019125at 4166.011 kb on - strand, within TX73_019125at 4166.021 kb on + strand, within TX73_019125at 4166.028 kb on + strand, within TX73_019125at 4166.062 kb on + strand, within TX73_019125at 4166.070 kb on - strand, within TX73_019125at 4166.242 kb on + strand, within TX73_019125at 4166.245 kb on - strand, within TX73_019125at 4166.252 kb on - strand, within TX73_019125at 4166.295 kb on + strand, within TX73_019125at 4166.307 kb on + strand, within TX73_019125at 4166.307 kb on + strand, within TX73_019125at 4166.315 kb on - strand, within TX73_019125at 4166.378 kb on - strand, within TX73_019125at 4166.395 kb on + strand, within TX73_019125at 4166.395 kb on + strand, within TX73_019125at 4166.403 kb on - strand, within TX73_019125at 4166.426 kb on + strandat 4166.436 kb on + strandat 4166.455 kb on + strandat 4166.463 kb on + strandat 4166.547 kb on - strandat 4166.558 kb on + strandat 4166.618 kb on - strandat 4166.652 kb on + strandat 4166.704 kb on + strandat 4166.760 kb on + strandat 4166.832 kb on - strand, within TX73_019130at 4166.851 kb on + strand, within TX73_019130at 4166.888 kb on + strand, within TX73_019130at 4166.890 kb on - strand, within TX73_019130at 4166.919 kb on + strand, within TX73_019130at 4166.935 kb on + strand, within TX73_019130at 4166.935 kb on + strand, within TX73_019130at 4166.935 kb on + strand, within TX73_019130at 4166.943 kb on - strand, within TX73_019130at 4166.976 kb on - strand, within TX73_019130at 4167.013 kb on - strand, within TX73_019130at 4167.043 kb on - strand, within TX73_019130at 4167.058 kb on + strand, within TX73_019130at 4167.070 kb on + strand, within TX73_019130at 4167.072 kb on + strand, within TX73_019130at 4167.077 kb on - strand, within TX73_019130at 4167.080 kb on - strand, within TX73_019130at 4167.091 kb on + strand, within TX73_019130at 4167.170 kb on + strand, within TX73_019130at 4167.170 kb on - strand, within TX73_019130at 4167.171 kb on - strand, within TX73_019130at 4167.180 kb on + strand, within TX73_019130at 4167.183 kb on + strand, within TX73_019130at 4167.183 kb on + strand, within TX73_019130at 4167.235 kb on - strand, within TX73_019130at 4167.252 kb on + strand, within TX73_019130at 4167.252 kb on + strand, within TX73_019130at 4167.252 kb on + strand, within TX73_019130at 4167.252 kb on + strand, within TX73_019130at 4167.252 kb on + strand, within TX73_019130at 4167.252 kb on + strand, within TX73_019130at 4167.252 kb on + strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.260 kb on - strand, within TX73_019130at 4167.291 kb on - strand, within TX73_019130at 4167.297 kb on + strand, within TX73_019130at 4167.305 kb on - strand, within TX73_019130at 4167.305 kb on - strand, within TX73_019130at 4167.321 kb on + strand, within TX73_019130at 4167.375 kb on + strand, within TX73_019130at 4167.385 kb on + strand, within TX73_019130at 4167.392 kb on + strand, within TX73_019130at 4167.412 kb on - strand, within TX73_019130at 4167.563 kb on + strand, within TX73_019130at 4167.593 kb on + strand, within TX73_019130

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate anaerobic with light
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4,163,776 + TX73_019120 0.14 +0.4
4,163,784 - TX73_019120 0.15 +1.0
4,163,784 - TX73_019120 0.15 +1.2
4,163,806 + TX73_019120 0.17 +1.2
4,163,912 - TX73_019120 0.26 +1.3
4,163,930 - TX73_019120 0.28 -0.8
4,163,937 + TX73_019120 0.28 +1.3
4,163,989 + TX73_019120 0.33 +1.6
4,164,143 + TX73_019120 0.47 +1.9
4,164,148 - TX73_019120 0.47 +0.4
4,164,197 + TX73_019120 0.52 +1.0
4,164,244 - TX73_019120 0.56 +1.9
4,164,244 - TX73_019120 0.56 -0.4
4,164,244 - TX73_019120 0.56 +0.8
4,164,281 + TX73_019120 0.59 +0.1
4,164,281 + TX73_019120 0.59 -0.7
4,164,289 - TX73_019120 0.60 +0.8
4,164,330 + TX73_019120 0.64 +2.0
4,164,401 - TX73_019120 0.70 -0.8
4,164,477 - TX73_019120 0.77 +2.7
4,164,484 + TX73_019120 0.78 -1.0
4,164,490 - TX73_019120 0.78 -0.4
4,164,723 - +1.4
4,164,779 + +0.1
4,164,782 - +0.4
4,164,789 + +0.3
4,164,841 - +0.3
4,164,856 - -0.2
4,164,867 + +0.6
4,164,892 + -0.4
4,164,900 - -0.3
4,164,942 + TX73_019125 0.11 +0.6
4,164,977 + TX73_019125 0.13 -0.4
4,165,072 + TX73_019125 0.18 +0.6
4,165,078 + TX73_019125 0.19 +0.9
4,165,139 - TX73_019125 0.22 +1.1
4,165,141 + TX73_019125 0.22 +0.2
4,165,151 + TX73_019125 0.22 +0.3
4,165,159 - TX73_019125 0.23 +1.2
4,165,168 + TX73_019125 0.23 +0.6
4,165,185 - TX73_019125 0.24 +0.4
4,165,185 - TX73_019125 0.24 +1.3
4,165,274 - TX73_019125 0.29 +0.7
4,165,341 + TX73_019125 0.33 +2.1
4,165,341 + TX73_019125 0.33 +0.4
4,165,341 + TX73_019125 0.33 +0.6
4,165,341 + TX73_019125 0.33 +1.3
4,165,341 + TX73_019125 0.33 +0.9
4,165,341 + TX73_019125 0.33 +0.4
4,165,341 + TX73_019125 0.33 +0.5
4,165,346 + TX73_019125 0.33 -0.3
4,165,349 - TX73_019125 0.33 +0.1
4,165,354 - TX73_019125 0.33 -2.0
4,165,377 - TX73_019125 0.35 -0.7
4,165,381 + TX73_019125 0.35 -0.3
4,165,389 - TX73_019125 0.35 -0.6
4,165,403 - TX73_019125 0.36 +0.4
4,165,422 + TX73_019125 0.37 +1.0
4,165,425 - TX73_019125 0.37 -0.8
4,165,427 + TX73_019125 0.37 +1.6
4,165,504 + TX73_019125 0.41 +0.1
4,165,559 - TX73_019125 0.44 +0.4
4,165,584 - TX73_019125 0.46 +0.7
4,165,604 - TX73_019125 0.47 +0.6
4,165,606 + TX73_019125 0.47 -0.2
4,165,629 - TX73_019125 0.48 +0.5
4,165,653 - TX73_019125 0.49 -1.0
4,165,665 + TX73_019125 0.50 -0.1
4,165,665 + TX73_019125 0.50 +0.6
4,165,673 - TX73_019125 0.50 +0.4
4,165,675 - TX73_019125 0.51 +0.3
4,165,735 - TX73_019125 0.54 +0.3
4,165,751 - TX73_019125 0.55 -0.1
4,165,803 - TX73_019125 0.57 -0.1
4,165,835 + TX73_019125 0.59 +0.5
4,165,846 + TX73_019125 0.60 +0.5
4,165,846 + TX73_019125 0.60 +0.2
4,165,846 + TX73_019125 0.60 +1.9
4,165,846 + TX73_019125 0.60 -0.5
4,165,899 + TX73_019125 0.63 +0.6
4,165,902 - TX73_019125 0.63 +0.6
4,165,912 - TX73_019125 0.63 +0.5
4,165,917 - TX73_019125 0.64 +0.4
4,165,995 + TX73_019125 0.68 +0.0
4,166,011 - TX73_019125 0.69 +0.4
4,166,021 + TX73_019125 0.69 +0.4
4,166,028 + TX73_019125 0.69 -0.4
4,166,062 + TX73_019125 0.71 -0.3
4,166,070 - TX73_019125 0.72 -0.1
4,166,242 + TX73_019125 0.81 +0.4
4,166,245 - TX73_019125 0.81 +2.2
4,166,252 - TX73_019125 0.81 +0.7
4,166,295 + TX73_019125 0.84 +0.7
4,166,307 + TX73_019125 0.84 +1.7
4,166,307 + TX73_019125 0.84 -0.1
4,166,315 - TX73_019125 0.85 +0.6
4,166,378 - TX73_019125 0.88 -0.6
4,166,395 + TX73_019125 0.89 -0.4
4,166,395 + TX73_019125 0.89 +0.2
4,166,403 - TX73_019125 0.90 +0.0
4,166,426 + +1.5
4,166,436 + +1.4
4,166,455 + +0.4
4,166,463 + +1.6
4,166,547 - +0.5
4,166,558 + +1.9
4,166,618 - +0.8
4,166,652 + -0.6
4,166,704 + +0.7
4,166,760 + +0.4
4,166,832 - TX73_019130 0.12 +0.3
4,166,851 + TX73_019130 0.13 +0.5
4,166,888 + TX73_019130 0.15 +2.0
4,166,890 - TX73_019130 0.15 +0.8
4,166,919 + TX73_019130 0.16 -0.2
4,166,935 + TX73_019130 0.17 +2.1
4,166,935 + TX73_019130 0.17 +0.7
4,166,935 + TX73_019130 0.17 +1.7
4,166,943 - TX73_019130 0.17 +0.6
4,166,976 - TX73_019130 0.19 +0.4
4,167,013 - TX73_019130 0.21 -0.1
4,167,043 - TX73_019130 0.23 -0.1
4,167,058 + TX73_019130 0.24 -0.5
4,167,070 + TX73_019130 0.24 +1.5
4,167,072 + TX73_019130 0.24 +0.2
4,167,077 - TX73_019130 0.25 -0.0
4,167,080 - TX73_019130 0.25 +0.5
4,167,091 + TX73_019130 0.25 +0.1
4,167,170 + TX73_019130 0.29 +1.4
4,167,170 - TX73_019130 0.29 +1.3
4,167,171 - TX73_019130 0.29 +0.0
4,167,180 + TX73_019130 0.30 +0.3
4,167,183 + TX73_019130 0.30 +2.2
4,167,183 + TX73_019130 0.30 +1.8
4,167,235 - TX73_019130 0.33 +2.0
4,167,252 + TX73_019130 0.34 +1.3
4,167,252 + TX73_019130 0.34 +1.2
4,167,252 + TX73_019130 0.34 +1.0
4,167,252 + TX73_019130 0.34 +1.4
4,167,252 + TX73_019130 0.34 +1.0
4,167,252 + TX73_019130 0.34 -1.3
4,167,252 + TX73_019130 0.34 -0.2
4,167,260 - TX73_019130 0.34 +0.6
4,167,260 - TX73_019130 0.34 +1.4
4,167,260 - TX73_019130 0.34 +0.2
4,167,260 - TX73_019130 0.34 +1.1
4,167,260 - TX73_019130 0.34 +0.8
4,167,260 - TX73_019130 0.34 -1.2
4,167,260 - TX73_019130 0.34 +0.6
4,167,260 - TX73_019130 0.34 +1.9
4,167,260 - TX73_019130 0.34 +1.2
4,167,260 - TX73_019130 0.34 +0.9
4,167,260 - TX73_019130 0.34 +0.3
4,167,260 - TX73_019130 0.34 +1.2
4,167,291 - TX73_019130 0.36 +0.1
4,167,297 + TX73_019130 0.36 -0.9
4,167,305 - TX73_019130 0.37 -0.2
4,167,305 - TX73_019130 0.37 -0.2
4,167,321 + TX73_019130 0.37 +0.2
4,167,375 + TX73_019130 0.40 -1.6
4,167,385 + TX73_019130 0.41 +0.7
4,167,392 + TX73_019130 0.41 +0.1
4,167,412 - TX73_019130 0.42 +1.2
4,167,563 + TX73_019130 0.50 +0.1
4,167,593 + TX73_019130 0.52 +2.1

Or see this region's nucleotide sequence