Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001910

Experiment: PM with succinate anaerobic with light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001905 and TX73_001910 are separated by 72 nucleotidesTX73_001910 and TX73_001915 are separated by 238 nucleotidesTX73_001915 and TX73_001920 are separated by 92 nucleotides TX73_001905: TX73_001905 - RluA family pseudouridine synthase, at 398,329 to 399,303 _001905 TX73_001910: TX73_001910 - hypothetical protein, at 399,376 to 399,711 _001910 TX73_001915: TX73_001915 - tRNA-Glu, at 399,950 to 400,024 _001915 TX73_001920: TX73_001920 - ATP-binding protein, at 400,117 to 402,720 _001920 Position (kb) 399 400Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 398.388 kb on - strandat 398.388 kb on - strandat 398.392 kb on + strandat 398.392 kb on + strandat 398.395 kb on - strandat 398.400 kb on - strandat 398.400 kb on - strandat 398.400 kb on - strandat 398.400 kb on - strandat 398.400 kb on - strandat 398.400 kb on - strandat 398.407 kb on + strandat 398.408 kb on + strandat 398.416 kb on - strandat 398.416 kb on - strandat 398.416 kb on - strandat 398.418 kb on + strandat 398.428 kb on + strand, within TX73_001905at 398.453 kb on + strand, within TX73_001905at 398.454 kb on + strand, within TX73_001905at 398.454 kb on + strand, within TX73_001905at 398.481 kb on + strand, within TX73_001905at 398.481 kb on + strand, within TX73_001905at 398.496 kb on + strand, within TX73_001905at 398.503 kb on - strand, within TX73_001905at 398.504 kb on - strand, within TX73_001905at 398.507 kb on + strand, within TX73_001905at 398.507 kb on + strand, within TX73_001905at 398.507 kb on + strand, within TX73_001905at 398.507 kb on + strand, within TX73_001905at 398.514 kb on - strand, within TX73_001905at 398.515 kb on - strand, within TX73_001905at 398.515 kb on - strand, within TX73_001905at 398.515 kb on - strand, within TX73_001905at 398.515 kb on - strand, within TX73_001905at 398.515 kb on - strand, within TX73_001905at 398.515 kb on - strand, within TX73_001905at 398.515 kb on - strand, within TX73_001905at 398.520 kb on + strand, within TX73_001905at 398.520 kb on + strand, within TX73_001905at 398.520 kb on + strand, within TX73_001905at 398.537 kb on - strand, within TX73_001905at 398.539 kb on + strand, within TX73_001905at 398.544 kb on + strand, within TX73_001905at 398.544 kb on + strand, within TX73_001905at 398.552 kb on - strand, within TX73_001905at 398.559 kb on - strand, within TX73_001905at 398.564 kb on + strand, within TX73_001905at 398.575 kb on + strand, within TX73_001905at 398.575 kb on + strand, within TX73_001905at 398.575 kb on + strand, within TX73_001905at 398.575 kb on + strand, within TX73_001905at 398.575 kb on + strand, within TX73_001905at 398.583 kb on - strand, within TX73_001905at 398.583 kb on - strand, within TX73_001905at 398.588 kb on - strand, within TX73_001905at 398.594 kb on + strand, within TX73_001905at 398.594 kb on + strand, within TX73_001905at 398.602 kb on - strand, within TX73_001905at 398.602 kb on - strand, within TX73_001905at 398.602 kb on - strand, within TX73_001905at 398.602 kb on - strand, within TX73_001905at 398.621 kb on + strand, within TX73_001905at 398.687 kb on - strand, within TX73_001905at 398.689 kb on + strand, within TX73_001905at 398.689 kb on + strand, within TX73_001905at 398.690 kb on + strand, within TX73_001905at 398.705 kb on + strand, within TX73_001905at 398.720 kb on + strand, within TX73_001905at 398.732 kb on - strand, within TX73_001905at 398.732 kb on - strand, within TX73_001905at 398.735 kb on + strand, within TX73_001905at 398.747 kb on + strand, within TX73_001905at 398.764 kb on + strand, within TX73_001905at 398.774 kb on + strand, within TX73_001905at 398.774 kb on + strand, within TX73_001905at 398.774 kb on + strand, within TX73_001905at 398.779 kb on + strand, within TX73_001905at 398.781 kb on - strand, within TX73_001905at 398.782 kb on - strand, within TX73_001905at 398.782 kb on - strand, within TX73_001905at 398.787 kb on - strand, within TX73_001905at 398.803 kb on + strand, within TX73_001905at 398.805 kb on + strand, within TX73_001905at 398.840 kb on + strand, within TX73_001905at 398.848 kb on - strand, within TX73_001905at 398.848 kb on - strand, within TX73_001905at 398.855 kb on + strand, within TX73_001905at 398.855 kb on + strand, within TX73_001905at 398.901 kb on - strand, within TX73_001905at 398.915 kb on + strand, within TX73_001905at 398.915 kb on + strand, within TX73_001905at 398.923 kb on - strand, within TX73_001905at 398.923 kb on - strand, within TX73_001905at 398.923 kb on - strand, within TX73_001905at 398.929 kb on + strand, within TX73_001905at 398.933 kb on + strand, within TX73_001905at 398.938 kb on - strand, within TX73_001905at 398.939 kb on + strand, within TX73_001905at 398.947 kb on - strand, within TX73_001905at 398.949 kb on + strand, within TX73_001905at 398.955 kb on - strand, within TX73_001905at 398.957 kb on - strand, within TX73_001905at 398.968 kb on + strand, within TX73_001905at 398.977 kb on - strand, within TX73_001905at 398.983 kb on - strand, within TX73_001905at 398.988 kb on - strand, within TX73_001905at 399.012 kb on + strand, within TX73_001905at 399.018 kb on + strand, within TX73_001905at 399.019 kb on - strand, within TX73_001905at 399.024 kb on - strand, within TX73_001905at 399.026 kb on - strand, within TX73_001905at 399.026 kb on - strand, within TX73_001905at 399.037 kb on + strand, within TX73_001905at 399.060 kb on + strand, within TX73_001905at 399.073 kb on + strand, within TX73_001905at 399.081 kb on - strand, within TX73_001905at 399.103 kb on + strand, within TX73_001905at 399.111 kb on - strand, within TX73_001905at 399.111 kb on - strand, within TX73_001905at 399.112 kb on - strand, within TX73_001905at 399.112 kb on - strand, within TX73_001905at 399.143 kb on + strand, within TX73_001905at 399.149 kb on - strand, within TX73_001905at 399.159 kb on - strand, within TX73_001905at 399.159 kb on - strand, within TX73_001905at 399.192 kb on + strand, within TX73_001905at 399.237 kb on + strandat 399.237 kb on + strandat 399.237 kb on + strandat 399.237 kb on + strandat 399.242 kb on + strandat 399.245 kb on - strandat 399.245 kb on - strandat 399.245 kb on - strandat 399.262 kb on - strandat 399.263 kb on + strandat 399.280 kb on + strandat 399.292 kb on + strandat 399.292 kb on + strandat 399.333 kb on + strandat 399.333 kb on + strandat 399.333 kb on + strandat 399.341 kb on - strandat 399.343 kb on + strandat 399.351 kb on - strandat 399.378 kb on + strandat 399.383 kb on + strandat 399.387 kb on - strandat 399.395 kb on - strandat 399.397 kb on + strandat 399.404 kb on + strandat 399.404 kb on + strandat 399.404 kb on + strandat 399.404 kb on + strandat 399.407 kb on - strandat 399.408 kb on + strandat 399.423 kb on + strand, within TX73_001910at 399.431 kb on - strand, within TX73_001910at 399.431 kb on - strand, within TX73_001910at 399.431 kb on - strand, within TX73_001910at 399.457 kb on + strand, within TX73_001910at 399.457 kb on + strand, within TX73_001910at 399.460 kb on - strand, within TX73_001910at 399.462 kb on + strand, within TX73_001910at 399.462 kb on + strand, within TX73_001910at 399.465 kb on - strand, within TX73_001910at 399.478 kb on - strand, within TX73_001910at 399.495 kb on - strand, within TX73_001910at 399.495 kb on - strand, within TX73_001910at 399.497 kb on - strand, within TX73_001910at 399.503 kb on + strand, within TX73_001910at 399.511 kb on - strand, within TX73_001910at 399.511 kb on - strand, within TX73_001910at 399.544 kb on + strand, within TX73_001910at 399.545 kb on - strand, within TX73_001910at 399.547 kb on + strand, within TX73_001910at 399.548 kb on + strand, within TX73_001910at 399.548 kb on + strand, within TX73_001910at 399.552 kb on - strand, within TX73_001910at 399.552 kb on - strand, within TX73_001910at 399.552 kb on - strand, within TX73_001910at 399.552 kb on - strand, within TX73_001910at 399.554 kb on + strand, within TX73_001910at 399.556 kb on - strand, within TX73_001910at 399.556 kb on - strand, within TX73_001910at 399.556 kb on - strand, within TX73_001910at 399.556 kb on - strand, within TX73_001910at 399.562 kb on - strand, within TX73_001910at 399.564 kb on + strand, within TX73_001910at 399.564 kb on + strand, within TX73_001910at 399.564 kb on + strand, within TX73_001910at 399.564 kb on + strand, within TX73_001910at 399.564 kb on + strand, within TX73_001910at 399.564 kb on + strand, within TX73_001910at 399.564 kb on + strand, within TX73_001910at 399.564 kb on + strand, within TX73_001910at 399.564 kb on + strand, within TX73_001910at 399.564 kb on + strand, within TX73_001910at 399.572 kb on - strand, within TX73_001910at 399.590 kb on - strand, within TX73_001910at 399.591 kb on - strand, within TX73_001910at 399.606 kb on + strand, within TX73_001910at 399.608 kb on + strand, within TX73_001910at 399.610 kb on + strand, within TX73_001910at 399.638 kb on + strand, within TX73_001910at 399.672 kb on + strand, within TX73_001910at 399.684 kb on - strandat 399.685 kb on + strandat 399.685 kb on + strandat 399.687 kb on + strandat 399.693 kb on - strandat 399.713 kb on - strandat 399.728 kb on + strandat 399.750 kb on + strandat 399.757 kb on + strandat 399.763 kb on + strandat 399.765 kb on - strandat 399.776 kb on + strandat 399.792 kb on - strandat 399.805 kb on + strandat 399.805 kb on + strandat 399.816 kb on + strandat 399.817 kb on - strandat 399.826 kb on + strandat 399.826 kb on + strandat 399.827 kb on - strandat 399.834 kb on - strandat 399.863 kb on + strandat 399.868 kb on + strandat 399.871 kb on - strandat 399.906 kb on + strandat 399.944 kb on - strandat 399.950 kb on - strandat 399.961 kb on - strand, within TX73_001915at 399.965 kb on - strand, within TX73_001915at 399.978 kb on + strand, within TX73_001915at 399.980 kb on + strand, within TX73_001915at 399.982 kb on + strand, within TX73_001915at 399.982 kb on + strand, within TX73_001915at 399.988 kb on - strand, within TX73_001915at 399.988 kb on - strand, within TX73_001915at 399.990 kb on - strand, within TX73_001915at 399.993 kb on + strand, within TX73_001915at 400.009 kb on + strand, within TX73_001915at 400.009 kb on + strand, within TX73_001915at 400.009 kb on + strand, within TX73_001915at 400.017 kb on - strandat 400.017 kb on - strandat 400.017 kb on - strandat 400.017 kb on - strandat 400.046 kb on + strandat 400.084 kb on + strandat 400.131 kb on + strandat 400.139 kb on - strandat 400.141 kb on - strandat 400.149 kb on + strandat 400.157 kb on - strandat 400.157 kb on - strandat 400.157 kb on - strandat 400.165 kb on + strandat 400.189 kb on - strandat 400.206 kb on - strandat 400.245 kb on + strandat 400.258 kb on + strandat 400.266 kb on - strandat 400.277 kb on + strandat 400.281 kb on - strandat 400.319 kb on + strandat 400.346 kb on - strandat 400.390 kb on + strand, within TX73_001920at 400.402 kb on + strand, within TX73_001920at 400.402 kb on + strand, within TX73_001920at 400.497 kb on + strand, within TX73_001920at 400.498 kb on - strand, within TX73_001920at 400.523 kb on + strand, within TX73_001920at 400.531 kb on - strand, within TX73_001920at 400.536 kb on + strand, within TX73_001920at 400.648 kb on - strand, within TX73_001920at 400.682 kb on - strand, within TX73_001920

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate anaerobic with light
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398,388 - -1.3
398,388 - +1.0
398,392 + +0.0
398,392 + -0.3
398,395 - -0.5
398,400 - +0.1
398,400 - -1.0
398,400 - +0.0
398,400 - +1.4
398,400 - +0.5
398,400 - -1.3
398,407 + +0.3
398,408 + +0.3
398,416 - +0.3
398,416 - -0.9
398,416 - -1.3
398,418 + +0.6
398,428 + TX73_001905 0.10 +0.9
398,453 + TX73_001905 0.13 +0.3
398,454 + TX73_001905 0.13 -0.0
398,454 + TX73_001905 0.13 +0.0
398,481 + TX73_001905 0.16 +0.1
398,481 + TX73_001905 0.16 +0.4
398,496 + TX73_001905 0.17 -0.6
398,503 - TX73_001905 0.18 +0.6
398,504 - TX73_001905 0.18 +1.1
398,507 + TX73_001905 0.18 -0.3
398,507 + TX73_001905 0.18 +0.7
398,507 + TX73_001905 0.18 -0.4
398,507 + TX73_001905 0.18 +0.4
398,514 - TX73_001905 0.19 +0.8
398,515 - TX73_001905 0.19 +0.1
398,515 - TX73_001905 0.19 +0.6
398,515 - TX73_001905 0.19 -0.5
398,515 - TX73_001905 0.19 +0.0
398,515 - TX73_001905 0.19 +1.1
398,515 - TX73_001905 0.19 +1.1
398,515 - TX73_001905 0.19 +0.5
398,520 + TX73_001905 0.20 +1.4
398,520 + TX73_001905 0.20 +1.7
398,520 + TX73_001905 0.20 +0.4
398,537 - TX73_001905 0.21 -0.7
398,539 + TX73_001905 0.22 +1.0
398,544 + TX73_001905 0.22 +0.2
398,544 + TX73_001905 0.22 -0.3
398,552 - TX73_001905 0.23 -0.0
398,559 - TX73_001905 0.24 +0.5
398,564 + TX73_001905 0.24 +0.4
398,575 + TX73_001905 0.25 +0.8
398,575 + TX73_001905 0.25 -1.7
398,575 + TX73_001905 0.25 +0.8
398,575 + TX73_001905 0.25 +0.5
398,575 + TX73_001905 0.25 +0.4
398,583 - TX73_001905 0.26 +0.8
398,583 - TX73_001905 0.26 +0.4
398,588 - TX73_001905 0.27 -0.8
398,594 + TX73_001905 0.27 +0.8
398,594 + TX73_001905 0.27 +0.3
398,602 - TX73_001905 0.28 +0.4
398,602 - TX73_001905 0.28 +0.1
398,602 - TX73_001905 0.28 +0.3
398,602 - TX73_001905 0.28 +1.0
398,621 + TX73_001905 0.30 +0.6
398,687 - TX73_001905 0.37 +0.1
398,689 + TX73_001905 0.37 +0.6
398,689 + TX73_001905 0.37 +0.7
398,690 + TX73_001905 0.37 +0.1
398,705 + TX73_001905 0.39 +0.2
398,720 + TX73_001905 0.40 +0.1
398,732 - TX73_001905 0.41 +0.8
398,732 - TX73_001905 0.41 +1.4
398,735 + TX73_001905 0.42 +0.1
398,747 + TX73_001905 0.43 -0.0
398,764 + TX73_001905 0.45 +0.6
398,774 + TX73_001905 0.46 +0.4
398,774 + TX73_001905 0.46 +0.4
398,774 + TX73_001905 0.46 +1.7
398,779 + TX73_001905 0.46 +0.3
398,781 - TX73_001905 0.46 +0.5
398,782 - TX73_001905 0.46 +0.1
398,782 - TX73_001905 0.46 +0.4
398,787 - TX73_001905 0.47 +1.1
398,803 + TX73_001905 0.49 -0.1
398,805 + TX73_001905 0.49 +0.3
398,840 + TX73_001905 0.52 +0.0
398,848 - TX73_001905 0.53 +0.2
398,848 - TX73_001905 0.53 +0.4
398,855 + TX73_001905 0.54 +0.6
398,855 + TX73_001905 0.54 -0.0
398,901 - TX73_001905 0.59 +0.4
398,915 + TX73_001905 0.60 +0.8
398,915 + TX73_001905 0.60 +1.0
398,923 - TX73_001905 0.61 +0.2
398,923 - TX73_001905 0.61 +0.4
398,923 - TX73_001905 0.61 +0.6
398,929 + TX73_001905 0.62 -0.1
398,933 + TX73_001905 0.62 -0.3
398,938 - TX73_001905 0.62 +0.7
398,939 + TX73_001905 0.63 +0.9
398,947 - TX73_001905 0.63 +1.2
398,949 + TX73_001905 0.64 +1.2
398,955 - TX73_001905 0.64 +0.4
398,957 - TX73_001905 0.64 +1.3
398,968 + TX73_001905 0.66 +0.3
398,977 - TX73_001905 0.66 +0.5
398,983 - TX73_001905 0.67 +0.7
398,988 - TX73_001905 0.68 +0.8
399,012 + TX73_001905 0.70 -0.5
399,018 + TX73_001905 0.71 -0.2
399,019 - TX73_001905 0.71 +0.1
399,024 - TX73_001905 0.71 +0.5
399,026 - TX73_001905 0.71 +0.6
399,026 - TX73_001905 0.71 -0.2
399,037 + TX73_001905 0.73 +0.1
399,060 + TX73_001905 0.75 +0.8
399,073 + TX73_001905 0.76 +0.7
399,081 - TX73_001905 0.77 +1.1
399,103 + TX73_001905 0.79 +0.5
399,111 - TX73_001905 0.80 +0.6
399,111 - TX73_001905 0.80 +0.9
399,112 - TX73_001905 0.80 +0.7
399,112 - TX73_001905 0.80 +0.9
399,143 + TX73_001905 0.83 +0.6
399,149 - TX73_001905 0.84 -0.5
399,159 - TX73_001905 0.85 +0.4
399,159 - TX73_001905 0.85 +0.8
399,192 + TX73_001905 0.89 +0.4
399,237 + +0.6
399,237 + +0.9
399,237 + +0.3
399,237 + +0.9
399,242 + +1.0
399,245 - +0.3
399,245 - +0.1
399,245 - -2.2
399,262 - +0.5
399,263 + -0.5
399,280 + -0.1
399,292 + +0.5
399,292 + +0.8
399,333 + +0.3
399,333 + -0.2
399,333 + +0.5
399,341 - +0.3
399,343 + +0.6
399,351 - -0.6
399,378 + -0.8
399,383 + +1.7
399,387 - +0.4
399,395 - +0.4
399,397 + -1.0
399,404 + -1.5
399,404 + +0.8
399,404 + +0.0
399,404 + +0.2
399,407 - +0.0
399,408 + +0.3
399,423 + TX73_001910 0.14 +0.7
399,431 - TX73_001910 0.16 -1.8
399,431 - TX73_001910 0.16 +0.9
399,431 - TX73_001910 0.16 +0.6
399,457 + TX73_001910 0.24 +1.1
399,457 + TX73_001910 0.24 +1.1
399,460 - TX73_001910 0.25 -0.5
399,462 + TX73_001910 0.26 +4.4
399,462 + TX73_001910 0.26 +0.8
399,465 - TX73_001910 0.26 +0.4
399,478 - TX73_001910 0.30 +2.2
399,495 - TX73_001910 0.35 -0.8
399,495 - TX73_001910 0.35 +0.0
399,497 - TX73_001910 0.36 +0.3
399,503 + TX73_001910 0.38 +0.5
399,511 - TX73_001910 0.40 +1.2
399,511 - TX73_001910 0.40 +1.2
399,544 + TX73_001910 0.50 +0.5
399,545 - TX73_001910 0.50 -1.4
399,547 + TX73_001910 0.51 +0.6
399,548 + TX73_001910 0.51 +0.9
399,548 + TX73_001910 0.51 -0.7
399,552 - TX73_001910 0.52 +0.2
399,552 - TX73_001910 0.52 +0.4
399,552 - TX73_001910 0.52 -1.8
399,552 - TX73_001910 0.52 +1.8
399,554 + TX73_001910 0.53 +0.5
399,556 - TX73_001910 0.54 +0.1
399,556 - TX73_001910 0.54 +0.4
399,556 - TX73_001910 0.54 +1.4
399,556 - TX73_001910 0.54 +0.7
399,562 - TX73_001910 0.55 +0.4
399,564 + TX73_001910 0.56 +0.1
399,564 + TX73_001910 0.56 +1.0
399,564 + TX73_001910 0.56 -0.0
399,564 + TX73_001910 0.56 +0.6
399,564 + TX73_001910 0.56 +0.6
399,564 + TX73_001910 0.56 +1.5
399,564 + TX73_001910 0.56 +0.6
399,564 + TX73_001910 0.56 +0.2
399,564 + TX73_001910 0.56 -0.7
399,564 + TX73_001910 0.56 +0.3
399,572 - TX73_001910 0.58 +0.8
399,590 - TX73_001910 0.64 +0.4
399,591 - TX73_001910 0.64 +0.8
399,606 + TX73_001910 0.68 +1.0
399,608 + TX73_001910 0.69 +0.8
399,610 + TX73_001910 0.70 +0.4
399,638 + TX73_001910 0.78 +0.0
399,672 + TX73_001910 0.88 -0.7
399,684 - +0.4
399,685 + +0.7
399,685 + +0.9
399,687 + +1.3
399,693 - +0.8
399,713 - +0.8
399,728 + -0.1
399,750 + -0.2
399,757 + +0.3
399,763 + -0.4
399,765 - -1.2
399,776 + -0.7
399,792 - +0.5
399,805 + +0.1
399,805 + -0.1
399,816 + +0.4
399,817 - -0.1
399,826 + -1.3
399,826 + -0.8
399,827 - -0.5
399,834 - +0.3
399,863 + -0.1
399,868 + -0.2
399,871 - -0.5
399,906 + +0.2
399,944 - +1.6
399,950 - -0.3
399,961 - TX73_001915 0.15 +0.2
399,965 - TX73_001915 0.20 -0.1
399,978 + TX73_001915 0.37 +1.5
399,980 + TX73_001915 0.40 +1.3
399,982 + TX73_001915 0.43 -0.5
399,982 + TX73_001915 0.43 -0.2
399,988 - TX73_001915 0.51 +0.9
399,988 - TX73_001915 0.51 +0.9
399,990 - TX73_001915 0.53 +0.0
399,993 + TX73_001915 0.57 +0.8
400,009 + TX73_001915 0.79 -0.1
400,009 + TX73_001915 0.79 +1.1
400,009 + TX73_001915 0.79 +0.5
400,017 - +0.6
400,017 - +0.7
400,017 - +1.4
400,017 - +0.2
400,046 + +0.3
400,084 + +0.4
400,131 + +1.0
400,139 - +0.1
400,141 - +0.4
400,149 + +0.0
400,157 - -0.2
400,157 - +0.2
400,157 - +0.3
400,165 + -0.1
400,189 - +0.2
400,206 - -0.4
400,245 + -0.6
400,258 + +0.2
400,266 - +0.1
400,277 + -0.2
400,281 - -2.0
400,319 + +0.6
400,346 - +0.4
400,390 + TX73_001920 0.10 +0.2
400,402 + TX73_001920 0.11 +0.6
400,402 + TX73_001920 0.11 -0.2
400,497 + TX73_001920 0.15 +0.9
400,498 - TX73_001920 0.15 -0.3
400,523 + TX73_001920 0.16 -0.1
400,531 - TX73_001920 0.16 -0.2
400,536 + TX73_001920 0.16 -0.8
400,648 - TX73_001920 0.20 -0.7
400,682 - TX73_001920 0.22 -0.7

Or see this region's nucleotide sequence