Experiment: PM with succinate anaerobic with light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000335 and TX73_000340 are separated by 228 nucleotides TX73_000340 and TX73_000345 are separated by 165 nucleotides TX73_000345 and TX73_000350 are separated by 37 nucleotides TX73_000350 and TX73_000355 are separated by 58 nucleotides
TX73_000335: TX73_000335 - 30S ribosomal protein S1, at 70,316 to 72,013
_000335
TX73_000340: TX73_000340 - signal peptide peptidase SppA, at 72,242 to 73,222
_000340
TX73_000345: TX73_000345 - integration host factor subunit beta, at 73,388 to 73,702
_000345
TX73_000350: TX73_000350 - LapA family protein, at 73,740 to 74,126
_000350
TX73_000355: TX73_000355 - phosphoribosylanthranilate isomerase, at 74,185 to 74,826
_000355
Position (kb) 72
73
74 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 71.637 kb on + strand, within TX73_000335 at 71.637 kb on + strand, within TX73_000335 at 71.637 kb on + strand, within TX73_000335 at 71.641 kb on + strand, within TX73_000335 at 71.647 kb on + strand, within TX73_000335 at 71.647 kb on + strand, within TX73_000335 at 71.647 kb on + strand, within TX73_000335 at 71.647 kb on + strand, within TX73_000335 at 71.686 kb on + strand, within TX73_000335 at 71.689 kb on + strand, within TX73_000335 at 71.704 kb on - strand, within TX73_000335 at 71.923 kb on + strand at 71.923 kb on + strand at 71.991 kb on + strand at 71.991 kb on + strand at 71.991 kb on + strand at 71.991 kb on + strand at 72.014 kb on + strand at 72.022 kb on - strand at 72.022 kb on - strand at 72.026 kb on + strand at 72.026 kb on + strand at 72.033 kb on + strand at 72.034 kb on - strand at 72.041 kb on - strand at 72.051 kb on - strand at 72.105 kb on - strand at 72.208 kb on + strand at 72.228 kb on + strand at 72.236 kb on - strand at 72.293 kb on - strand at 72.294 kb on - strand at 72.298 kb on - strand at 72.340 kb on + strand, within TX73_000340 at 72.359 kb on - strand, within TX73_000340 at 72.364 kb on + strand, within TX73_000340 at 72.385 kb on + strand, within TX73_000340 at 72.393 kb on - strand, within TX73_000340 at 72.409 kb on + strand, within TX73_000340 at 72.409 kb on + strand, within TX73_000340 at 72.417 kb on - strand, within TX73_000340 at 72.417 kb on - strand, within TX73_000340 at 72.422 kb on + strand, within TX73_000340 at 72.422 kb on + strand, within TX73_000340 at 72.423 kb on - strand, within TX73_000340 at 72.443 kb on - strand, within TX73_000340 at 72.481 kb on - strand, within TX73_000340 at 72.492 kb on + strand, within TX73_000340 at 72.519 kb on + strand, within TX73_000340 at 72.524 kb on + strand, within TX73_000340 at 72.532 kb on - strand, within TX73_000340 at 72.539 kb on + strand, within TX73_000340 at 72.542 kb on - strand, within TX73_000340 at 72.568 kb on + strand, within TX73_000340 at 72.592 kb on + strand, within TX73_000340 at 72.592 kb on + strand, within TX73_000340 at 72.593 kb on + strand, within TX73_000340 at 72.600 kb on + strand, within TX73_000340 at 72.601 kb on - strand, within TX73_000340 at 72.631 kb on + strand, within TX73_000340 at 72.636 kb on + strand, within TX73_000340 at 72.636 kb on + strand, within TX73_000340 at 72.636 kb on + strand, within TX73_000340 at 72.636 kb on + strand, within TX73_000340 at 72.644 kb on - strand, within TX73_000340 at 72.644 kb on - strand, within TX73_000340 at 72.644 kb on - strand, within TX73_000340 at 72.644 kb on - strand, within TX73_000340 at 72.644 kb on - strand, within TX73_000340 at 72.644 kb on - strand, within TX73_000340 at 72.644 kb on - strand, within TX73_000340 at 72.661 kb on + strand, within TX73_000340 at 72.661 kb on + strand, within TX73_000340 at 72.664 kb on - strand, within TX73_000340 at 72.671 kb on - strand, within TX73_000340 at 72.671 kb on - strand, within TX73_000340 at 72.671 kb on - strand, within TX73_000340 at 72.674 kb on + strand, within TX73_000340 at 72.686 kb on + strand, within TX73_000340 at 72.691 kb on + strand, within TX73_000340 at 72.694 kb on - strand, within TX73_000340 at 72.699 kb on + strand, within TX73_000340 at 72.708 kb on + strand, within TX73_000340 at 72.716 kb on - strand, within TX73_000340 at 72.716 kb on - strand, within TX73_000340 at 72.718 kb on + strand, within TX73_000340 at 72.718 kb on + strand, within TX73_000340 at 72.718 kb on + strand, within TX73_000340 at 72.724 kb on - strand, within TX73_000340 at 72.724 kb on - strand, within TX73_000340 at 72.726 kb on - strand, within TX73_000340 at 72.726 kb on - strand, within TX73_000340 at 72.726 kb on - strand, within TX73_000340 at 72.726 kb on - strand, within TX73_000340 at 72.726 kb on - strand, within TX73_000340 at 72.726 kb on - strand, within TX73_000340 at 72.739 kb on + strand, within TX73_000340 at 72.740 kb on - strand, within TX73_000340 at 72.747 kb on - strand, within TX73_000340 at 72.763 kb on + strand, within TX73_000340 at 72.763 kb on + strand, within TX73_000340 at 72.763 kb on + strand, within TX73_000340 at 72.763 kb on + strand, within TX73_000340 at 72.771 kb on - strand, within TX73_000340 at 72.771 kb on - strand, within TX73_000340 at 72.773 kb on + strand, within TX73_000340 at 72.783 kb on + strand, within TX73_000340 at 72.791 kb on - strand, within TX73_000340 at 72.791 kb on - strand, within TX73_000340 at 72.791 kb on - strand, within TX73_000340 at 72.791 kb on - strand, within TX73_000340 at 72.791 kb on - strand, within TX73_000340 at 72.793 kb on + strand, within TX73_000340 at 72.796 kb on - strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.798 kb on + strand, within TX73_000340 at 72.806 kb on - strand, within TX73_000340 at 72.806 kb on - strand, within TX73_000340 at 72.806 kb on - strand, within TX73_000340 at 72.806 kb on - strand, within TX73_000340 at 72.806 kb on - strand, within TX73_000340 at 72.806 kb on - strand, within TX73_000340 at 72.806 kb on - strand, within TX73_000340 at 72.806 kb on - strand, within TX73_000340 at 72.832 kb on - strand, within TX73_000340 at 72.837 kb on - strand, within TX73_000340 at 72.837 kb on - strand, within TX73_000340 at 72.863 kb on + strand, within TX73_000340 at 72.863 kb on + strand, within TX73_000340 at 72.866 kb on - strand, within TX73_000340 at 72.866 kb on - strand, within TX73_000340 at 72.871 kb on - strand, within TX73_000340 at 72.871 kb on - strand, within TX73_000340 at 72.873 kb on + strand, within TX73_000340 at 72.873 kb on + strand, within TX73_000340 at 72.895 kb on + strand, within TX73_000340 at 72.895 kb on + strand, within TX73_000340 at 72.895 kb on + strand, within TX73_000340 at 72.903 kb on - strand, within TX73_000340 at 72.903 kb on - strand, within TX73_000340 at 72.915 kb on + strand, within TX73_000340 at 72.916 kb on - strand, within TX73_000340 at 72.927 kb on - strand, within TX73_000340 at 72.931 kb on + strand, within TX73_000340 at 72.938 kb on + strand, within TX73_000340 at 72.946 kb on - strand, within TX73_000340 at 72.953 kb on - strand, within TX73_000340 at 72.953 kb on - strand, within TX73_000340 at 72.953 kb on - strand, within TX73_000340 at 73.002 kb on - strand, within TX73_000340 at 73.020 kb on - strand, within TX73_000340 at 73.044 kb on + strand, within TX73_000340 at 73.064 kb on + strand, within TX73_000340 at 73.072 kb on - strand, within TX73_000340 at 73.080 kb on + strand, within TX73_000340 at 73.083 kb on - strand, within TX73_000340 at 73.088 kb on - strand, within TX73_000340 at 73.097 kb on + strand, within TX73_000340 at 73.107 kb on + strand, within TX73_000340 at 73.107 kb on - strand, within TX73_000340 at 73.117 kb on - strand, within TX73_000340 at 73.132 kb on - strand at 73.139 kb on + strand at 73.139 kb on + strand at 73.142 kb on - strand at 73.142 kb on - strand at 73.147 kb on - strand at 73.147 kb on - strand at 73.152 kb on - strand at 73.157 kb on - strand at 73.162 kb on - strand at 73.171 kb on + strand at 73.176 kb on + strand at 73.214 kb on + strand at 73.224 kb on - strand at 73.226 kb on - strand at 73.248 kb on - strand at 73.263 kb on + strand at 73.263 kb on - strand at 73.277 kb on + strand at 73.291 kb on - strand at 73.304 kb on - strand at 73.375 kb on + strand at 73.375 kb on + strand at 73.375 kb on + strand at 73.375 kb on + strand at 73.666 kb on - strand, within TX73_000345 at 73.687 kb on + strand at 73.692 kb on + strand at 73.692 kb on + strand at 73.695 kb on - strand at 73.697 kb on + strand at 73.697 kb on + strand at 73.697 kb on + strand at 73.700 kb on - strand at 73.705 kb on - strand at 73.705 kb on - strand at 73.710 kb on + strand at 73.710 kb on + strand at 73.718 kb on - strand at 73.763 kb on + strand at 73.766 kb on - strand at 73.772 kb on - strand at 73.772 kb on - strand at 73.969 kb on + strand, within TX73_000350 at 73.993 kb on - strand, within TX73_000350 at 73.994 kb on + strand, within TX73_000350 at 74.001 kb on + strand, within TX73_000350 at 74.002 kb on + strand, within TX73_000350 at 74.009 kb on - strand, within TX73_000350 at 74.009 kb on - strand, within TX73_000350 at 74.022 kb on - strand, within TX73_000350 at 74.041 kb on - strand, within TX73_000350 at 74.046 kb on + strand, within TX73_000350 at 74.051 kb on + strand, within TX73_000350 at 74.055 kb on + strand, within TX73_000350 at 74.103 kb on + strand at 74.121 kb on + strand at 74.121 kb on + strand at 74.121 kb on + strand at 74.121 kb on + strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.129 kb on - strand at 74.165 kb on + strand at 74.172 kb on - strand at 74.173 kb on - strand at 74.175 kb on + strand at 74.182 kb on + strand at 74.187 kb on + strand at 74.187 kb on + strand at 74.187 kb on + strand at 74.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate anaerobic with light remove 71,637 + TX73_000335 0.78 +0.2 71,637 + TX73_000335 0.78 +2.1 71,637 + TX73_000335 0.78 +0.8 71,641 + TX73_000335 0.78 +1.4 71,647 + TX73_000335 0.78 -0.3 71,647 + TX73_000335 0.78 +1.9 71,647 + TX73_000335 0.78 +1.6 71,647 + TX73_000335 0.78 +0.5 71,686 + TX73_000335 0.81 +0.7 71,689 + TX73_000335 0.81 +3.1 71,704 - TX73_000335 0.82 -0.9 71,923 + +0.7 71,923 + +0.7 71,991 + +0.2 71,991 + -0.7 71,991 + +0.4 71,991 + -0.2 72,014 + +0.8 72,022 - +0.4 72,022 - -0.6 72,026 + -0.1 72,026 + -0.2 72,033 + -0.2 72,034 - -0.1 72,041 - -0.2 72,051 - +0.3 72,105 - +0.9 72,208 + +0.3 72,228 + -0.2 72,236 - -1.0 72,293 - -0.8 72,294 - -0.1 72,298 - -0.3 72,340 + TX73_000340 0.10 -0.5 72,359 - TX73_000340 0.12 +0.1 72,364 + TX73_000340 0.12 +0.0 72,385 + TX73_000340 0.15 -0.2 72,393 - TX73_000340 0.15 -0.2 72,409 + TX73_000340 0.17 -0.5 72,409 + TX73_000340 0.17 -0.5 72,417 - TX73_000340 0.18 +0.5 72,417 - TX73_000340 0.18 -1.1 72,422 + TX73_000340 0.18 -0.5 72,422 + TX73_000340 0.18 -0.3 72,423 - TX73_000340 0.18 -0.2 72,443 - TX73_000340 0.20 -0.7 72,481 - TX73_000340 0.24 -0.9 72,492 + TX73_000340 0.25 -0.4 72,519 + TX73_000340 0.28 -0.2 72,524 + TX73_000340 0.29 +0.9 72,532 - TX73_000340 0.30 +1.9 72,539 + TX73_000340 0.30 -0.2 72,542 - TX73_000340 0.31 -0.3 72,568 + TX73_000340 0.33 +0.1 72,592 + TX73_000340 0.36 +0.5 72,592 + TX73_000340 0.36 +0.6 72,593 + TX73_000340 0.36 -0.8 72,600 + TX73_000340 0.36 -0.1 72,601 - TX73_000340 0.37 +0.2 72,631 + TX73_000340 0.40 -0.1 72,636 + TX73_000340 0.40 -0.4 72,636 + TX73_000340 0.40 -1.0 72,636 + TX73_000340 0.40 -0.7 72,636 + TX73_000340 0.40 +0.3 72,644 - TX73_000340 0.41 -0.2 72,644 - TX73_000340 0.41 +0.1 72,644 - TX73_000340 0.41 +0.1 72,644 - TX73_000340 0.41 +0.1 72,644 - TX73_000340 0.41 -0.6 72,644 - TX73_000340 0.41 -0.2 72,644 - TX73_000340 0.41 -0.4 72,661 + TX73_000340 0.43 -0.1 72,661 + TX73_000340 0.43 -0.2 72,664 - TX73_000340 0.43 -0.1 72,671 - TX73_000340 0.44 -0.1 72,671 - TX73_000340 0.44 -0.3 72,671 - TX73_000340 0.44 -0.5 72,674 + TX73_000340 0.44 -0.2 72,686 + TX73_000340 0.45 -0.2 72,691 + TX73_000340 0.46 +0.5 72,694 - TX73_000340 0.46 +0.3 72,699 + TX73_000340 0.47 -0.2 72,708 + TX73_000340 0.48 +0.0 72,716 - TX73_000340 0.48 -1.3 72,716 - TX73_000340 0.48 -0.9 72,718 + TX73_000340 0.49 -0.6 72,718 + TX73_000340 0.49 +0.3 72,718 + TX73_000340 0.49 -0.5 72,724 - TX73_000340 0.49 -0.4 72,724 - TX73_000340 0.49 -1.0 72,726 - TX73_000340 0.49 -0.6 72,726 - TX73_000340 0.49 -2.1 72,726 - TX73_000340 0.49 -0.1 72,726 - TX73_000340 0.49 -0.4 72,726 - TX73_000340 0.49 -0.2 72,726 - TX73_000340 0.49 -0.9 72,739 + TX73_000340 0.51 +0.0 72,740 - TX73_000340 0.51 -0.4 72,747 - TX73_000340 0.51 -1.2 72,763 + TX73_000340 0.53 -0.7 72,763 + TX73_000340 0.53 -1.1 72,763 + TX73_000340 0.53 -0.2 72,763 + TX73_000340 0.53 -0.1 72,771 - TX73_000340 0.54 -0.3 72,771 - TX73_000340 0.54 +1.1 72,773 + TX73_000340 0.54 -0.7 72,783 + TX73_000340 0.55 -0.0 72,791 - TX73_000340 0.56 +0.1 72,791 - TX73_000340 0.56 +0.9 72,791 - TX73_000340 0.56 -1.4 72,791 - TX73_000340 0.56 +0.6 72,791 - TX73_000340 0.56 -0.9 72,793 + TX73_000340 0.56 +0.1 72,796 - TX73_000340 0.56 -0.1 72,798 + TX73_000340 0.57 -0.2 72,798 + TX73_000340 0.57 -0.4 72,798 + TX73_000340 0.57 +0.4 72,798 + TX73_000340 0.57 +1.0 72,798 + TX73_000340 0.57 -0.5 72,798 + TX73_000340 0.57 -0.6 72,798 + TX73_000340 0.57 -0.1 72,798 + TX73_000340 0.57 +0.2 72,798 + TX73_000340 0.57 -1.0 72,798 + TX73_000340 0.57 -1.1 72,798 + TX73_000340 0.57 +0.3 72,798 + TX73_000340 0.57 -0.6 72,798 + TX73_000340 0.57 +0.2 72,798 + TX73_000340 0.57 -0.3 72,798 + TX73_000340 0.57 -0.1 72,798 + TX73_000340 0.57 -0.3 72,798 + TX73_000340 0.57 -0.4 72,806 - TX73_000340 0.57 +0.7 72,806 - TX73_000340 0.57 -0.6 72,806 - TX73_000340 0.57 +0.0 72,806 - TX73_000340 0.57 +0.9 72,806 - TX73_000340 0.57 +0.3 72,806 - TX73_000340 0.57 -0.3 72,806 - TX73_000340 0.57 -0.3 72,806 - TX73_000340 0.57 -1.1 72,832 - TX73_000340 0.60 -1.6 72,837 - TX73_000340 0.61 +1.2 72,837 - TX73_000340 0.61 -0.9 72,863 + TX73_000340 0.63 -0.5 72,863 + TX73_000340 0.63 -0.0 72,866 - TX73_000340 0.64 -0.5 72,866 - TX73_000340 0.64 -0.6 72,871 - TX73_000340 0.64 -0.0 72,871 - TX73_000340 0.64 +0.1 72,873 + TX73_000340 0.64 +0.4 72,873 + TX73_000340 0.64 -0.6 72,895 + TX73_000340 0.67 -0.0 72,895 + TX73_000340 0.67 -1.1 72,895 + TX73_000340 0.67 +0.2 72,903 - TX73_000340 0.67 +0.0 72,903 - TX73_000340 0.67 +0.2 72,915 + TX73_000340 0.69 +0.0 72,916 - TX73_000340 0.69 -0.8 72,927 - TX73_000340 0.70 +1.8 72,931 + TX73_000340 0.70 -0.9 72,938 + TX73_000340 0.71 -0.1 72,946 - TX73_000340 0.72 -0.5 72,953 - TX73_000340 0.72 +0.3 72,953 - TX73_000340 0.72 -0.3 72,953 - TX73_000340 0.72 +0.9 73,002 - TX73_000340 0.77 +0.1 73,020 - TX73_000340 0.79 +0.3 73,044 + TX73_000340 0.82 -0.2 73,064 + TX73_000340 0.84 +0.7 73,072 - TX73_000340 0.85 -1.0 73,080 + TX73_000340 0.85 +0.2 73,083 - TX73_000340 0.86 -0.4 73,088 - TX73_000340 0.86 -3.8 73,097 + TX73_000340 0.87 -1.6 73,107 + TX73_000340 0.88 -0.9 73,107 - TX73_000340 0.88 -0.7 73,117 - TX73_000340 0.89 +0.1 73,132 - -0.0 73,139 + +0.1 73,139 + -0.2 73,142 - -0.4 73,142 - -0.4 73,147 - +1.1 73,147 - -0.5 73,152 - +1.4 73,157 - -0.8 73,162 - -0.8 73,171 + -0.9 73,176 + -0.2 73,214 + +0.5 73,224 - +1.5 73,226 - -0.7 73,248 - +0.3 73,263 + +0.7 73,263 - -0.0 73,277 + -0.2 73,291 - +0.1 73,304 - +0.3 73,375 + +0.6 73,375 + +0.1 73,375 + +0.4 73,375 + -0.4 73,666 - TX73_000345 0.88 -1.1 73,687 + -0.5 73,692 + +0.1 73,692 + +0.1 73,695 - +0.8 73,697 + +0.2 73,697 + +0.7 73,697 + -0.2 73,700 - -0.4 73,705 - -0.0 73,705 - -2.5 73,710 + +0.6 73,710 + -0.8 73,718 - +0.4 73,763 + +0.7 73,766 - +3.1 73,772 - +0.7 73,772 - +1.7 73,969 + TX73_000350 0.59 +0.1 73,993 - TX73_000350 0.65 +0.1 73,994 + TX73_000350 0.66 +0.6 74,001 + TX73_000350 0.67 -0.8 74,002 + TX73_000350 0.68 +0.0 74,009 - TX73_000350 0.70 -0.0 74,009 - TX73_000350 0.70 +1.1 74,022 - TX73_000350 0.73 -0.3 74,041 - TX73_000350 0.78 +2.6 74,046 + TX73_000350 0.79 -0.4 74,051 + TX73_000350 0.80 -0.6 74,055 + TX73_000350 0.81 -0.2 74,103 + -0.3 74,121 + -0.4 74,121 + -0.1 74,121 + -0.1 74,121 + -0.1 74,129 - +0.1 74,129 - -0.2 74,129 - +0.3 74,129 - -0.4 74,129 - +0.2 74,129 - +0.6 74,129 - +0.0 74,129 - +0.5 74,129 - +0.4 74,129 - +1.5 74,129 - +0.8 74,129 - +0.2 74,129 - +1.1 74,129 - +0.1 74,129 - +0.4 74,165 + +0.2 74,172 - +1.6 74,173 - +0.2 74,175 + +0.0 74,182 + +0.6 74,187 + -1.2 74,187 + -0.2 74,187 + -1.2 74,190 - +0.4
Or see this region's nucleotide sequence