Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020020

Experiment: PM with succinate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate anaerobic with light
4,363,694	+		TX73_020010	0.33	-0.3
4,363,694	+		TX73_020010	0.33	-0.7
4,363,694	+		TX73_020010	0.33	-0.4
4,363,697	-		TX73_020010	0.35	-0.3
4,363,697	-		TX73_020010	0.35	-0.6
4,363,699	+		TX73_020010	0.37	-1.6
4,363,702	-		TX73_020010	0.39	+0.1
4,363,702	-		TX73_020010	0.39	-0.6
4,363,702	-		TX73_020010	0.39	+0.4
4,363,707	-		TX73_020010	0.43	+0.2
4,363,712	+		TX73_020010	0.46	-0.6
4,363,712	+		TX73_020010	0.46	-0.4
4,363,717	-		TX73_020010	0.50	+0.0
4,363,720	-		TX73_020010	0.52	-0.2
4,363,806	-				-0.8
4,363,813	+				-1.2
4,363,813	+				-0.6
4,363,819	-				-1.9
4,363,819	-				-0.5
4,363,821	-				+0.0
4,363,821	-				+1.2
4,363,821	-				-0.2
4,363,821	-				-0.1
4,363,828	+				+0.1
4,363,831	-				+1.0
4,363,836	-				-2.9
4,363,836	-				+0.1
4,363,855	-				-1.1
4,363,879	+				+0.4
4,363,887	-				-1.1
4,363,892	-				-0.8
4,363,903	+				-0.1
4,363,908	+				+0.2
4,363,911	-				+0.3
4,363,916	-				-0.1
4,363,923	-				-0.4
4,363,924	+				-0.6
4,363,991	-		TX73_020015	0.19	-1.4
4,363,996	-		TX73_020015	0.20	-0.3
4,364,002	+		TX73_020015	0.21	+0.3
4,364,010	-		TX73_020015	0.22	-0.4
4,364,015	+		TX73_020015	0.23	-0.1
4,364,015	+		TX73_020015	0.23	+0.7
4,364,025	+		TX73_020015	0.24	+0.1
4,364,028	-		TX73_020015	0.25	-0.3
4,364,028	-		TX73_020015	0.25	-0.8
4,364,164	+		TX73_020015	0.45	-2.4
4,364,181	-		TX73_020015	0.48	-0.4
4,364,181	-		TX73_020015	0.48	-0.2
4,364,183	+		TX73_020015	0.48	+0.5
4,364,191	-		TX73_020015	0.49	-0.6
4,364,191	-		TX73_020015	0.49	-0.4
4,364,205	+		TX73_020015	0.51	+0.3
4,364,213	-		TX73_020015	0.53	-0.3
4,364,244	-		TX73_020015	0.57	+0.3
4,364,244	-		TX73_020015	0.57	-0.3
4,364,248	+		TX73_020015	0.58	-0.7
4,364,253	+		TX73_020015	0.59	+0.2
4,364,255	+		TX73_020015	0.59	+0.5
4,364,263	-		TX73_020015	0.60	-1.3
4,364,263	-		TX73_020015	0.60	-0.3
4,364,296	-		TX73_020015	0.65	+0.3
4,364,313	+		TX73_020015	0.68	+1.5
4,364,347	+		TX73_020015	0.73	-0.9
4,364,347	+		TX73_020015	0.73	-0.9
4,364,347	+		TX73_020015	0.73	-0.3
4,364,347	+		TX73_020015	0.73	+0.5
4,364,347	+		TX73_020015	0.73	+0.4
4,364,347	+		TX73_020015	0.73	-0.5
4,364,347	+		TX73_020015	0.73	-0.0
4,364,347	+		TX73_020015	0.73	-1.2
4,364,347	+		TX73_020015	0.73	+0.6
4,364,352	+		TX73_020015	0.73	+0.3
4,364,355	-		TX73_020015	0.74	-0.8
4,364,355	-		TX73_020015	0.74	-0.4
4,364,355	-		TX73_020015	0.74	+0.1
4,364,355	-		TX73_020015	0.74	+0.2
4,364,355	-		TX73_020015	0.74	-0.2
4,364,357	+		TX73_020015	0.74	+0.3
4,364,357	+		TX73_020015	0.74	-0.5
4,364,357	+		TX73_020015	0.74	+0.7
4,364,360	-		TX73_020015	0.75	-0.7
4,364,365	-		TX73_020015	0.75	+0.5
4,364,365	-		TX73_020015	0.75	-0.5
4,364,375	+		TX73_020015	0.77	+0.4
4,364,390	+		TX73_020015	0.79	-1.2
4,364,393	-		TX73_020015	0.80	+0.8
4,364,399	+		TX73_020015	0.80	-1.3
4,364,402	-		TX73_020015	0.81	-0.3
4,364,417	-		TX73_020015	0.83	-0.6
4,364,444	-		TX73_020015	0.87	-0.3
4,364,451	+		TX73_020015	0.88	+0.1
4,364,459	+		TX73_020015	0.89	+1.1
4,364,469	+				+0.4
4,364,474	+				-0.3
4,364,474	+				-0.0
4,364,474	+				-0.8
4,364,474	+				+0.4
4,364,475	+				-0.3
4,364,482	-				-0.0
4,364,482	-				-0.8
4,364,506	+				+0.3
4,364,506	+				+0.5
4,364,508	-				+0.1
4,364,526	+				+0.0
4,364,568	-				+0.4
4,364,651	-				-0.1
4,364,661	-				+0.6
4,364,672	-				+0.1
4,364,672	-				-1.4
4,364,694	-				+0.4
4,364,711	+				-0.2
4,364,717	+		TX73_020020	0.10	+1.1
4,364,717	+		TX73_020020	0.10	+0.5
4,364,725	-		TX73_020020	0.13	+0.6
4,364,733	+		TX73_020020	0.16	+0.4
4,364,741	-		TX73_020020	0.19	-0.0
4,364,753	+		TX73_020020	0.24	+1.7
4,364,765	+		TX73_020020	0.28	+1.1
4,364,803	+		TX73_020020	0.43	+0.6
4,364,807	-		TX73_020020	0.44	+0.8
4,364,841	+		TX73_020020	0.57	+0.6
4,364,849	+		TX73_020020	0.60	+2.3
4,364,849	+		TX73_020020	0.60	-0.9
4,364,849	+		TX73_020020	0.60	+1.1
4,364,857	-		TX73_020020	0.63	+0.8
4,364,857	-		TX73_020020	0.63	+1.7
4,364,857	-		TX73_020020	0.63	+0.1
4,364,881	+		TX73_020020	0.72	+0.8
4,364,881	+		TX73_020020	0.72	+2.2
4,364,881	-		TX73_020020	0.72	+2.3
4,364,888	+		TX73_020020	0.75	+2.9
4,364,893	+		TX73_020020	0.76	+0.6
4,364,894	+		TX73_020020	0.77	+1.8
4,364,896	-		TX73_020020	0.78	+0.3
4,364,896	-		TX73_020020	0.78	+0.9
4,364,902	-		TX73_020020	0.80	+1.3
4,364,904	+		TX73_020020	0.81	+1.2
4,364,906	-		TX73_020020	0.81	+1.4
4,364,907	-		TX73_020020	0.82	+1.2
4,364,907	-		TX73_020020	0.82	-0.1
4,364,907	-		TX73_020020	0.82	+2.0
4,364,907	-		TX73_020020	0.82	+0.7
4,364,907	-		TX73_020020	0.82	+2.0
4,364,912	+		TX73_020020	0.84	+2.0
4,364,913	-		TX73_020020	0.84	+0.6
4,364,920	-		TX73_020020	0.87	+0.1
4,364,931	-				+2.0
4,364,939	-				+1.0
4,364,939	-				+1.1
4,364,939	-				+1.4
4,364,976	+				+0.3
4,364,984	-				+0.1
4,364,984	-				+0.2
4,364,996	+				+1.7
4,365,037	-		TX73_020025	0.32	-0.8
4,365,037	-		TX73_020025	0.32	-0.5
4,365,039	+		TX73_020025	0.33	-0.0
4,365,047	-		TX73_020025	0.40	-0.7
4,365,054	+		TX73_020025	0.45	-0.0
4,365,076	-		TX73_020025	0.62	-1.0
4,365,088	+		TX73_020025	0.71	-0.1
4,365,088	+		TX73_020025	0.71	+0.5
4,365,096	-		TX73_020025	0.78	-0.0
4,365,096	-		TX73_020025	0.78	+0.0
4,365,096	-		TX73_020025	0.78	-0.3
4,365,101	-		TX73_020025	0.81	+0.2
4,365,114	+				-0.6
4,365,120	+				+0.5
4,365,122	-				-1.2
4,365,125	+				-0.9
4,365,158	-				-0.4
4,365,184	+				-0.1
4,365,201	-				-0.2
4,365,212	-				-2.4
4,365,237	+				-0.0
4,365,245	-				-1.4
4,365,246	-				+0.4
4,365,257	-				+0.4
4,365,267	-				+0.4
4,365,284	+				-0.2
4,365,289	-				-0.5
4,365,289	-				-1.2
4,365,289	-				-1.0
4,365,289	-				+0.8
4,365,289	-				+0.0
4,365,290	-				-0.3
4,365,312	-		TX73_020030	0.13	-0.6
4,365,316	+		TX73_020030	0.14	-0.4
4,365,326	+		TX73_020030	0.16	+0.5
4,365,328	+		TX73_020030	0.16	-0.5
4,365,328	+		TX73_020030	0.16	+1.2
4,365,335	+		TX73_020030	0.18	-0.1
4,365,335	+		TX73_020030	0.18	-0.0
4,365,336	-		TX73_020030	0.18	-0.1
4,365,343	-		TX73_020030	0.19	-0.3
4,365,366	-		TX73_020030	0.24	-1.8
4,365,407	-		TX73_020030	0.33	-1.5
4,365,426	+		TX73_020030	0.37	-0.1
4,365,436	-		TX73_020030	0.40	+0.6
4,365,451	+		TX73_020030	0.43	-0.4
4,365,458	+		TX73_020030	0.44	-0.2
4,365,458	+		TX73_020030	0.44	-0.0
4,365,483	+		TX73_020030	0.50	-1.3
4,365,491	-		TX73_020030	0.52	-0.7
4,365,493	+		TX73_020030	0.52	+0.1
4,365,512	+		TX73_020030	0.56	-0.9
4,365,512	+		TX73_020030	0.56	-0.1
4,365,521	+		TX73_020030	0.58	+0.6
4,365,535	-		TX73_020030	0.61	+1.8
4,365,535	-		TX73_020030	0.61	-0.1
4,365,537	+		TX73_020030	0.61	+0.1
4,365,553	-		TX73_020030	0.65	-0.7
4,365,594	+		TX73_020030	0.74	+0.5
4,365,610	-		TX73_020030	0.77	+0.9
4,365,615	-		TX73_020030	0.78	-0.4
4,365,625	-		TX73_020030	0.81	-0.8
4,365,644	+		TX73_020030	0.85	-0.8
4,365,644	+		TX73_020030	0.85	-0.7
4,365,644	+		TX73_020030	0.85	+0.4
4,365,654	+		TX73_020030	0.87	-0.0
4,365,680	+				-0.3
4,365,708	+				-1.2
4,365,711	-				-0.2
4,365,716	-				-1.8
4,365,739	-				+0.1
4,365,745	+				-2.2
4,365,801	-				+0.5
4,365,820	+				-0.5
4,365,820	+				+0.0
4,365,820	+				+0.4
4,365,828	-				-0.3
4,365,872	+				-1.1
4,365,905	+				+0.3
4,365,905	-				-1.6
4,365,908	-				+0.4
4,365,918	-		TX73_020035	0.10	-0.1
4,365,923	+		TX73_020035	0.11	-0.8
4,365,923	+		TX73_020035	0.11	+0.3
4,365,923	+		TX73_020035	0.11	-0.4
4,365,923	+		TX73_020035	0.11	-0.8
4,365,926	-		TX73_020035	0.11	+0.4
4,365,926	-		TX73_020035	0.11	+0.6
4,365,931	-		TX73_020035	0.11	-0.3
4,365,931	-		TX73_020035	0.11	-1.3
4,365,931	-		TX73_020035	0.11	+0.1
4,365,931	-		TX73_020035	0.11	+0.4
4,365,931	-		TX73_020035	0.11	-0.4
4,365,935	-		TX73_020035	0.11	-0.8