Experiment: PM with succinate anaerobic with light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002930 and TX73_002935 are separated by 128 nucleotides TX73_002935 and TX73_002940 are separated by 76 nucleotides
TX73_002930: TX73_002930 - PHB depolymerase family esterase, at 627,896 to 629,083
_002930
TX73_002935: TX73_002935 - DUF1236 domain-containing protein, at 629,212 to 629,631
_002935
TX73_002940: TX73_002940 - AraC family transcriptional regulator, at 629,708 to 630,685
_002940
Position (kb) 629
630 Strain fitness (log2 ratio) -2
-1
0
1 at 628.215 kb on + strand, within TX73_002930 at 628.220 kb on + strand, within TX73_002930 at 628.235 kb on + strand, within TX73_002930 at 628.238 kb on - strand, within TX73_002930 at 628.243 kb on - strand, within TX73_002930 at 628.255 kb on + strand, within TX73_002930 at 628.255 kb on + strand, within TX73_002930 at 628.279 kb on - strand, within TX73_002930 at 628.299 kb on + strand, within TX73_002930 at 628.304 kb on + strand, within TX73_002930 at 628.312 kb on - strand, within TX73_002930 at 628.312 kb on - strand, within TX73_002930 at 628.312 kb on - strand, within TX73_002930 at 628.319 kb on + strand, within TX73_002930 at 628.362 kb on + strand, within TX73_002930 at 628.362 kb on + strand, within TX73_002930 at 628.380 kb on - strand, within TX73_002930 at 628.380 kb on - strand, within TX73_002930 at 628.383 kb on + strand, within TX73_002930 at 628.391 kb on - strand, within TX73_002930 at 628.391 kb on - strand, within TX73_002930 at 628.403 kb on + strand, within TX73_002930 at 628.409 kb on - strand, within TX73_002930 at 628.423 kb on + strand, within TX73_002930 at 628.423 kb on + strand, within TX73_002930 at 628.423 kb on + strand, within TX73_002930 at 628.431 kb on - strand, within TX73_002930 at 628.431 kb on - strand, within TX73_002930 at 628.431 kb on - strand, within TX73_002930 at 628.431 kb on - strand, within TX73_002930 at 628.431 kb on - strand, within TX73_002930 at 628.431 kb on - strand, within TX73_002930 at 628.431 kb on - strand, within TX73_002930 at 628.431 kb on - strand, within TX73_002930 at 628.431 kb on - strand, within TX73_002930 at 628.431 kb on - strand, within TX73_002930 at 628.437 kb on + strand, within TX73_002930 at 628.453 kb on - strand, within TX73_002930 at 628.468 kb on + strand, within TX73_002930 at 628.471 kb on - strand, within TX73_002930 at 628.490 kb on + strand, within TX73_002930 at 628.491 kb on - strand, within TX73_002930 at 628.496 kb on + strand, within TX73_002930 at 628.496 kb on - strand, within TX73_002930 at 628.498 kb on - strand, within TX73_002930 at 628.498 kb on - strand, within TX73_002930 at 628.518 kb on + strand, within TX73_002930 at 628.521 kb on - strand, within TX73_002930 at 628.524 kb on - strand, within TX73_002930 at 628.529 kb on + strand, within TX73_002930 at 628.536 kb on - strand, within TX73_002930 at 628.538 kb on - strand, within TX73_002930 at 628.618 kb on - strand, within TX73_002930 at 628.626 kb on + strand, within TX73_002930 at 628.628 kb on - strand, within TX73_002930 at 628.638 kb on + strand, within TX73_002930 at 628.666 kb on + strand, within TX73_002930 at 628.682 kb on + strand, within TX73_002930 at 628.715 kb on - strand, within TX73_002930 at 628.721 kb on - strand, within TX73_002930 at 628.723 kb on + strand, within TX73_002930 at 628.731 kb on - strand, within TX73_002930 at 628.731 kb on - strand, within TX73_002930 at 628.731 kb on - strand, within TX73_002930 at 628.733 kb on + strand, within TX73_002930 at 628.741 kb on - strand, within TX73_002930 at 628.772 kb on - strand, within TX73_002930 at 628.772 kb on - strand, within TX73_002930 at 628.783 kb on + strand, within TX73_002930 at 628.808 kb on - strand, within TX73_002930 at 628.812 kb on - strand, within TX73_002930 at 628.818 kb on - strand, within TX73_002930 at 628.826 kb on + strand, within TX73_002930 at 628.851 kb on + strand, within TX73_002930 at 628.851 kb on + strand, within TX73_002930 at 628.874 kb on - strand, within TX73_002930 at 628.897 kb on - strand, within TX73_002930 at 628.987 kb on + strand at 629.025 kb on + strand at 629.042 kb on + strand at 629.044 kb on + strand at 629.044 kb on + strand at 629.044 kb on + strand at 629.049 kb on + strand at 629.050 kb on - strand at 629.052 kb on - strand at 629.052 kb on - strand at 629.052 kb on - strand at 629.072 kb on - strand at 629.082 kb on - strand at 629.106 kb on - strand at 629.106 kb on - strand at 629.108 kb on + strand at 629.108 kb on + strand at 629.111 kb on - strand at 629.116 kb on - strand at 629.116 kb on - strand at 629.164 kb on + strand at 629.164 kb on + strand at 629.164 kb on + strand at 629.172 kb on - strand at 629.172 kb on - strand at 629.172 kb on - strand at 629.172 kb on - strand at 629.178 kb on + strand at 629.187 kb on + strand at 629.277 kb on + strand, within TX73_002935 at 629.284 kb on + strand, within TX73_002935 at 629.284 kb on + strand, within TX73_002935 at 629.285 kb on - strand, within TX73_002935 at 629.285 kb on - strand, within TX73_002935 at 629.292 kb on - strand, within TX73_002935 at 629.292 kb on - strand, within TX73_002935 at 629.293 kb on - strand, within TX73_002935 at 629.296 kb on + strand, within TX73_002935 at 629.298 kb on + strand, within TX73_002935 at 629.309 kb on + strand, within TX73_002935 at 629.343 kb on - strand, within TX73_002935 at 629.343 kb on - strand, within TX73_002935 at 629.372 kb on - strand, within TX73_002935 at 629.404 kb on + strand, within TX73_002935 at 629.412 kb on - strand, within TX73_002935 at 629.412 kb on - strand, within TX73_002935 at 629.435 kb on + strand, within TX73_002935 at 629.445 kb on + strand, within TX73_002935 at 629.489 kb on - strand, within TX73_002935 at 629.506 kb on + strand, within TX73_002935 at 629.524 kb on - strand, within TX73_002935 at 629.532 kb on - strand, within TX73_002935 at 629.532 kb on - strand, within TX73_002935 at 629.532 kb on - strand, within TX73_002935 at 629.559 kb on - strand, within TX73_002935 at 629.564 kb on - strand, within TX73_002935 at 629.574 kb on + strand, within TX73_002935 at 629.582 kb on - strand, within TX73_002935 at 629.592 kb on - strand at 629.604 kb on + strand at 629.611 kb on - strand at 629.614 kb on + strand at 629.660 kb on + strand at 629.706 kb on + strand at 629.706 kb on + strand at 629.706 kb on + strand at 629.714 kb on - strand at 629.714 kb on - strand at 629.714 kb on - strand at 629.714 kb on - strand at 629.714 kb on - strand at 629.714 kb on - strand at 629.745 kb on + strand at 629.796 kb on + strand at 629.796 kb on + strand at 629.801 kb on + strand at 629.804 kb on - strand at 629.806 kb on + strand, within TX73_002940 at 629.806 kb on + strand, within TX73_002940 at 629.826 kb on - strand, within TX73_002940 at 629.851 kb on + strand, within TX73_002940 at 629.851 kb on + strand, within TX73_002940 at 629.859 kb on - strand, within TX73_002940 at 629.859 kb on - strand, within TX73_002940 at 629.859 kb on - strand, within TX73_002940 at 629.922 kb on + strand, within TX73_002940 at 629.922 kb on + strand, within TX73_002940 at 629.930 kb on - strand, within TX73_002940 at 629.930 kb on - strand, within TX73_002940 at 629.935 kb on + strand, within TX73_002940 at 629.943 kb on - strand, within TX73_002940 at 629.946 kb on + strand, within TX73_002940 at 629.968 kb on + strand, within TX73_002940 at 629.992 kb on + strand, within TX73_002940 at 630.031 kb on - strand, within TX73_002940 at 630.036 kb on - strand, within TX73_002940 at 630.069 kb on + strand, within TX73_002940 at 630.087 kb on + strand, within TX73_002940 at 630.095 kb on + strand, within TX73_002940 at 630.095 kb on - strand, within TX73_002940 at 630.126 kb on + strand, within TX73_002940 at 630.126 kb on + strand, within TX73_002940 at 630.130 kb on + strand, within TX73_002940 at 630.135 kb on + strand, within TX73_002940 at 630.135 kb on + strand, within TX73_002940 at 630.211 kb on - strand, within TX73_002940 at 630.215 kb on + strand, within TX73_002940 at 630.254 kb on - strand, within TX73_002940 at 630.260 kb on + strand, within TX73_002940 at 630.261 kb on - strand, within TX73_002940 at 630.261 kb on - strand, within TX73_002940 at 630.263 kb on + strand, within TX73_002940 at 630.265 kb on + strand, within TX73_002940 at 630.277 kb on + strand, within TX73_002940 at 630.285 kb on - strand, within TX73_002940 at 630.289 kb on + strand, within TX73_002940 at 630.289 kb on + strand, within TX73_002940 at 630.320 kb on + strand, within TX73_002940 at 630.321 kb on - strand, within TX73_002940 at 630.329 kb on - strand, within TX73_002940 at 630.329 kb on - strand, within TX73_002940 at 630.329 kb on - strand, within TX73_002940 at 630.329 kb on - strand, within TX73_002940 at 630.336 kb on + strand, within TX73_002940 at 630.379 kb on + strand, within TX73_002940 at 630.379 kb on + strand, within TX73_002940 at 630.379 kb on + strand, within TX73_002940 at 630.392 kb on - strand, within TX73_002940 at 630.413 kb on - strand, within TX73_002940 at 630.425 kb on - strand, within TX73_002940 at 630.425 kb on - strand, within TX73_002940 at 630.441 kb on + strand, within TX73_002940 at 630.448 kb on + strand, within TX73_002940 at 630.448 kb on + strand, within TX73_002940 at 630.448 kb on + strand, within TX73_002940 at 630.449 kb on - strand, within TX73_002940 at 630.464 kb on - strand, within TX73_002940 at 630.470 kb on - strand, within TX73_002940 at 630.499 kb on + strand, within TX73_002940 at 630.499 kb on + strand, within TX73_002940 at 630.507 kb on - strand, within TX73_002940 at 630.509 kb on - strand, within TX73_002940 at 630.519 kb on - strand, within TX73_002940 at 630.570 kb on + strand, within TX73_002940 at 630.571 kb on - strand, within TX73_002940 at 630.578 kb on - strand, within TX73_002940 at 630.588 kb on - strand at 630.599 kb on + strand at 630.599 kb on + strand at 630.599 kb on + strand at 630.607 kb on - strand at 630.607 kb on - strand at 630.607 kb on - strand at 630.607 kb on - strand at 630.607 kb on - strand at 630.607 kb on - strand at 630.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate anaerobic with light remove 628,215 + TX73_002930 0.27 -1.0 628,220 + TX73_002930 0.27 -0.2 628,235 + TX73_002930 0.29 +0.2 628,238 - TX73_002930 0.29 +1.4 628,243 - TX73_002930 0.29 -0.4 628,255 + TX73_002930 0.30 -0.5 628,255 + TX73_002930 0.30 -0.2 628,279 - TX73_002930 0.32 -0.4 628,299 + TX73_002930 0.34 -0.7 628,304 + TX73_002930 0.34 -1.6 628,312 - TX73_002930 0.35 -1.1 628,312 - TX73_002930 0.35 +0.3 628,312 - TX73_002930 0.35 -0.4 628,319 + TX73_002930 0.36 -2.1 628,362 + TX73_002930 0.39 -1.3 628,362 + TX73_002930 0.39 -0.3 628,380 - TX73_002930 0.41 -1.0 628,380 - TX73_002930 0.41 -1.1 628,383 + TX73_002930 0.41 -0.2 628,391 - TX73_002930 0.42 +0.3 628,391 - TX73_002930 0.42 -0.3 628,403 + TX73_002930 0.43 -0.8 628,409 - TX73_002930 0.43 -0.0 628,423 + TX73_002930 0.44 -0.3 628,423 + TX73_002930 0.44 -0.3 628,423 + TX73_002930 0.44 -0.5 628,431 - TX73_002930 0.45 -0.2 628,431 - TX73_002930 0.45 -0.9 628,431 - TX73_002930 0.45 -0.2 628,431 - TX73_002930 0.45 +0.2 628,431 - TX73_002930 0.45 -0.1 628,431 - TX73_002930 0.45 -2.0 628,431 - TX73_002930 0.45 +0.7 628,431 - TX73_002930 0.45 +0.0 628,431 - TX73_002930 0.45 +1.1 628,431 - TX73_002930 0.45 +0.6 628,437 + TX73_002930 0.46 +0.2 628,453 - TX73_002930 0.47 +0.7 628,468 + TX73_002930 0.48 -0.1 628,471 - TX73_002930 0.48 +0.1 628,490 + TX73_002930 0.50 +0.2 628,491 - TX73_002930 0.50 -1.7 628,496 + TX73_002930 0.51 -0.7 628,496 - TX73_002930 0.51 +0.1 628,498 - TX73_002930 0.51 -1.6 628,498 - TX73_002930 0.51 -0.7 628,518 + TX73_002930 0.52 -0.3 628,521 - TX73_002930 0.53 +0.1 628,524 - TX73_002930 0.53 +0.2 628,529 + TX73_002930 0.53 -0.4 628,536 - TX73_002930 0.54 +0.1 628,538 - TX73_002930 0.54 -0.1 628,618 - TX73_002930 0.61 -0.0 628,626 + TX73_002930 0.61 -0.5 628,628 - TX73_002930 0.62 -0.3 628,638 + TX73_002930 0.62 -0.3 628,666 + TX73_002930 0.65 -0.2 628,682 + TX73_002930 0.66 +0.3 628,715 - TX73_002930 0.69 -0.1 628,721 - TX73_002930 0.69 +0.2 628,723 + TX73_002930 0.70 -0.7 628,731 - TX73_002930 0.70 -0.1 628,731 - TX73_002930 0.70 -1.2 628,731 - TX73_002930 0.70 -0.6 628,733 + TX73_002930 0.70 -0.2 628,741 - TX73_002930 0.71 +0.3 628,772 - TX73_002930 0.74 -0.2 628,772 - TX73_002930 0.74 -0.6 628,783 + TX73_002930 0.75 -0.2 628,808 - TX73_002930 0.77 -0.2 628,812 - TX73_002930 0.77 +0.1 628,818 - TX73_002930 0.78 -0.0 628,826 + TX73_002930 0.78 -0.5 628,851 + TX73_002930 0.80 -1.0 628,851 + TX73_002930 0.80 -0.2 628,874 - TX73_002930 0.82 -1.0 628,897 - TX73_002930 0.84 +0.7 628,987 + -0.0 629,025 + -0.7 629,042 + +0.3 629,044 + -0.1 629,044 + -1.5 629,044 + +0.4 629,049 + +0.1 629,050 - +0.1 629,052 - -1.1 629,052 - +0.6 629,052 - +0.2 629,072 - -0.6 629,082 - -1.9 629,106 - -0.1 629,106 - +1.1 629,108 + -1.0 629,108 + -0.5 629,111 - -0.0 629,116 - +0.2 629,116 - -0.2 629,164 + -0.0 629,164 + +1.0 629,164 + +0.5 629,172 - -0.2 629,172 - -0.1 629,172 - -0.9 629,172 - +0.1 629,178 + +0.3 629,187 + +0.5 629,277 + TX73_002935 0.15 +0.0 629,284 + TX73_002935 0.17 +0.3 629,284 + TX73_002935 0.17 +0.4 629,285 - TX73_002935 0.17 +0.5 629,285 - TX73_002935 0.17 +0.4 629,292 - TX73_002935 0.19 +0.3 629,292 - TX73_002935 0.19 +0.4 629,293 - TX73_002935 0.19 +0.0 629,296 + TX73_002935 0.20 -0.5 629,298 + TX73_002935 0.20 +0.3 629,309 + TX73_002935 0.23 +0.5 629,343 - TX73_002935 0.31 -0.2 629,343 - TX73_002935 0.31 +0.1 629,372 - TX73_002935 0.38 -0.6 629,404 + TX73_002935 0.46 -0.4 629,412 - TX73_002935 0.48 +0.4 629,412 - TX73_002935 0.48 -1.3 629,435 + TX73_002935 0.53 -0.2 629,445 + TX73_002935 0.55 +0.5 629,489 - TX73_002935 0.66 -0.2 629,506 + TX73_002935 0.70 +1.0 629,524 - TX73_002935 0.74 -0.4 629,532 - TX73_002935 0.76 -0.5 629,532 - TX73_002935 0.76 +0.5 629,532 - TX73_002935 0.76 -1.6 629,559 - TX73_002935 0.83 +0.4 629,564 - TX73_002935 0.84 -0.1 629,574 + TX73_002935 0.86 +0.2 629,582 - TX73_002935 0.88 -0.9 629,592 - -0.1 629,604 + -0.1 629,611 - -0.1 629,614 + +0.2 629,660 + +0.8 629,706 + -0.9 629,706 + +0.2 629,706 + +0.8 629,714 - +0.1 629,714 - -1.0 629,714 - -0.3 629,714 - -0.5 629,714 - +0.2 629,714 - -0.6 629,745 + -0.1 629,796 + +0.1 629,796 + +0.9 629,801 + +0.5 629,804 - -0.2 629,806 + TX73_002940 0.10 -0.4 629,806 + TX73_002940 0.10 -0.2 629,826 - TX73_002940 0.12 +0.4 629,851 + TX73_002940 0.15 +0.9 629,851 + TX73_002940 0.15 -0.1 629,859 - TX73_002940 0.15 +1.1 629,859 - TX73_002940 0.15 -1.1 629,859 - TX73_002940 0.15 -0.9 629,922 + TX73_002940 0.22 +0.1 629,922 + TX73_002940 0.22 -0.6 629,930 - TX73_002940 0.23 +0.7 629,930 - TX73_002940 0.23 +0.4 629,935 + TX73_002940 0.23 -1.3 629,943 - TX73_002940 0.24 +0.9 629,946 + TX73_002940 0.24 -0.1 629,968 + TX73_002940 0.27 +0.0 629,992 + TX73_002940 0.29 -0.9 630,031 - TX73_002940 0.33 -1.1 630,036 - TX73_002940 0.34 +0.5 630,069 + TX73_002940 0.37 -0.3 630,087 + TX73_002940 0.39 -0.6 630,095 + TX73_002940 0.40 -1.5 630,095 - TX73_002940 0.40 -0.1 630,126 + TX73_002940 0.43 -1.7 630,126 + TX73_002940 0.43 +0.6 630,130 + TX73_002940 0.43 -0.5 630,135 + TX73_002940 0.44 -1.3 630,135 + TX73_002940 0.44 -0.3 630,211 - TX73_002940 0.51 +0.7 630,215 + TX73_002940 0.52 -0.7 630,254 - TX73_002940 0.56 -2.4 630,260 + TX73_002940 0.56 -1.1 630,261 - TX73_002940 0.57 -1.7 630,261 - TX73_002940 0.57 +0.3 630,263 + TX73_002940 0.57 +0.1 630,265 + TX73_002940 0.57 +0.1 630,277 + TX73_002940 0.58 -0.4 630,285 - TX73_002940 0.59 +0.3 630,289 + TX73_002940 0.59 -0.6 630,289 + TX73_002940 0.59 -0.7 630,320 + TX73_002940 0.63 +0.1 630,321 - TX73_002940 0.63 -0.5 630,329 - TX73_002940 0.63 -0.3 630,329 - TX73_002940 0.63 -1.1 630,329 - TX73_002940 0.63 +0.3 630,329 - TX73_002940 0.63 +1.1 630,336 + TX73_002940 0.64 +0.2 630,379 + TX73_002940 0.69 -0.5 630,379 + TX73_002940 0.69 +1.0 630,379 + TX73_002940 0.69 -0.8 630,392 - TX73_002940 0.70 +1.1 630,413 - TX73_002940 0.72 -1.8 630,425 - TX73_002940 0.73 +0.3 630,425 - TX73_002940 0.73 -0.0 630,441 + TX73_002940 0.75 -0.2 630,448 + TX73_002940 0.76 +0.2 630,448 + TX73_002940 0.76 +0.1 630,448 + TX73_002940 0.76 -2.2 630,449 - TX73_002940 0.76 +0.5 630,464 - TX73_002940 0.77 -0.5 630,470 - TX73_002940 0.78 -0.1 630,499 + TX73_002940 0.81 +0.6 630,499 + TX73_002940 0.81 +0.6 630,507 - TX73_002940 0.82 +0.2 630,509 - TX73_002940 0.82 +0.6 630,519 - TX73_002940 0.83 -0.6 630,570 + TX73_002940 0.88 +0.3 630,571 - TX73_002940 0.88 +0.7 630,578 - TX73_002940 0.89 -0.2 630,588 - +0.0 630,599 + -1.2 630,599 + +0.6 630,599 + -0.3 630,607 - +0.7 630,607 - -0.4 630,607 - +0.4 630,607 - +0.1 630,607 - -0.1 630,607 - -0.5 630,618 - +0.3
Or see this region's nucleotide sequence