Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011750

Experiment: PM with succinate and Sodium Formate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate anaerobic with light
2,572,889	+				-0.1
2,572,934	-		TX73_011745	0.14	-0.6
2,572,942	-		TX73_011745	0.15	+0.0
2,572,942	-		TX73_011745	0.15	+0.4
2,572,972	+		TX73_011745	0.18	+0.1
2,572,992	-		TX73_011745	0.20	+0.2
2,573,010	-		TX73_011745	0.22	+0.6
2,573,025	-		TX73_011745	0.24	+0.5
2,573,025	-		TX73_011745	0.24	-0.5
2,573,050	+		TX73_011745	0.26	-0.6
2,573,058	-		TX73_011745	0.27	+0.6
2,573,063	-		TX73_011745	0.28	+0.1
2,573,068	-		TX73_011745	0.28	+0.5
2,573,077	+		TX73_011745	0.29	-0.0
2,573,079	+		TX73_011745	0.29	+0.5
2,573,079	+		TX73_011745	0.29	-0.6
2,573,079	+		TX73_011745	0.29	-2.1
2,573,087	-		TX73_011745	0.30	-0.2
2,573,087	-		TX73_011745	0.30	+0.1
2,573,089	+		TX73_011745	0.30	-0.3
2,573,089	+		TX73_011745	0.30	-0.8
2,573,097	-		TX73_011745	0.31	-2.2
2,573,097	-		TX73_011745	0.31	-1.0
2,573,129	+		TX73_011745	0.34	+0.4
2,573,137	-		TX73_011745	0.35	-0.3
2,573,185	+		TX73_011745	0.40	+0.6
2,573,206	+		TX73_011745	0.42	+0.0
2,573,217	+		TX73_011745	0.44	+0.4
2,573,217	+		TX73_011745	0.44	-0.6
2,573,225	-		TX73_011745	0.44	+0.0
2,573,251	+		TX73_011745	0.47	+0.9
2,573,296	+		TX73_011745	0.52	+0.8
2,573,296	+		TX73_011745	0.52	-0.3
2,573,296	+		TX73_011745	0.52	+0.4
2,573,304	-		TX73_011745	0.52	-0.7
2,573,304	-		TX73_011745	0.52	-0.9
2,573,304	-		TX73_011745	0.52	-0.2
2,573,329	+		TX73_011745	0.55	-0.9
2,573,360	-		TX73_011745	0.58	-0.4
2,573,381	-		TX73_011745	0.60	+1.5
2,573,391	+		TX73_011745	0.61	-0.5
2,573,391	+		TX73_011745	0.61	+0.3
2,573,447	+		TX73_011745	0.67	+0.1
2,573,455	+		TX73_011745	0.68	-0.1
2,573,460	+		TX73_011745	0.69	+0.5
2,573,561	+		TX73_011745	0.79	-0.2
2,573,562	-		TX73_011745	0.79	-0.2
2,573,579	-		TX73_011745	0.81	-0.5
2,573,641	+		TX73_011745	0.87	+0.2
2,573,651	-		TX73_011745	0.88	+0.3
2,573,659	-		TX73_011745	0.89	+0.2
2,573,670	+				+0.1
2,573,681	+				+0.2
2,573,686	+				-0.4
2,573,686	+				-1.5
2,573,686	+				-0.3
2,573,689	-				+0.3
2,573,696	-				-0.2
2,573,708	+				-0.3
2,573,716	+				+0.3
2,573,718	+				-0.5
2,573,750	-				+0.2
2,573,769	-				-0.3
2,573,789	-				-0.2
2,573,794	-				+0.2
2,573,890	-				-0.3
2,573,899	+				-0.4
2,573,906	-				-1.0
2,573,913	+				+0.6
2,573,913	-				+0.6
2,573,916	+				-0.6
2,573,924	-				+0.6
2,573,952	+				+0.1
2,573,953	-				+0.1
2,573,954	+				-0.7
2,573,958	+				-0.0
2,573,960	-				+0.2
2,573,960	-				-0.4
2,573,970	+				-0.2
2,573,972	-				+0.5
2,573,978	-				-0.6
2,573,980	+				+1.2
2,573,988	+				-0.0
2,574,035	+		TX73_011750	0.11	+0.1
2,574,054	+		TX73_011750	0.12	-0.4
2,574,065	-		TX73_011750	0.13	+0.3
2,574,076	-		TX73_011750	0.13	-0.5
2,574,093	-		TX73_011750	0.14	-0.5
2,574,101	-		TX73_011750	0.15	-0.3
2,574,101	-		TX73_011750	0.15	-0.4
2,574,133	+		TX73_011750	0.17	+0.1
2,574,133	+		TX73_011750	0.17	-0.9
2,574,232	+		TX73_011750	0.24	+0.5
2,574,232	+		TX73_011750	0.24	-0.4
2,574,232	+		TX73_011750	0.24	-0.4
2,574,248	-		TX73_011750	0.25	-0.8
2,574,270	-		TX73_011750	0.26	-1.1
2,574,278	+		TX73_011750	0.27	-0.1
2,574,284	-		TX73_011750	0.27	+1.6
2,574,325	-		TX73_011750	0.30	-0.8
2,574,333	+		TX73_011750	0.31	+0.1
2,574,338	+		TX73_011750	0.31	-0.1
2,574,384	+		TX73_011750	0.34	+0.2
2,574,412	+		TX73_011750	0.36	-0.1
2,574,415	-		TX73_011750	0.36	+0.1
2,574,430	-		TX73_011750	0.37	-1.2
2,574,467	+		TX73_011750	0.40	-0.0
2,574,467	+		TX73_011750	0.40	-0.5
2,574,475	-		TX73_011750	0.40	-0.7
2,574,532	+		TX73_011750	0.44	-0.8
2,574,532	-		TX73_011750	0.44	+0.4
2,574,534	+		TX73_011750	0.44	-0.9
2,574,540	-		TX73_011750	0.45	-0.2
2,574,540	-		TX73_011750	0.45	+0.6
2,574,561	+		TX73_011750	0.46	-0.1
2,574,630	+		TX73_011750	0.51	-0.8
2,574,630	+		TX73_011750	0.51	+0.3
2,574,636	-		TX73_011750	0.51	-0.6
2,574,636	-		TX73_011750	0.51	+0.3
2,574,638	-		TX73_011750	0.51	-0.3
2,574,638	-		TX73_011750	0.51	+0.4
2,574,728	+		TX73_011750	0.57	-0.2
2,574,766	-		TX73_011750	0.60	-0.3
2,574,789	+		TX73_011750	0.62	+0.1
2,574,883	-		TX73_011750	0.68	+0.0
2,574,894	-		TX73_011750	0.69	-0.4
2,574,913	+		TX73_011750	0.70	-0.2
2,574,928	-		TX73_011750	0.71	+0.3
2,574,935	+		TX73_011750	0.71	-0.3
2,574,937	-		TX73_011750	0.72	+0.2
2,574,948	-		TX73_011750	0.72	+0.1
2,574,953	+		TX73_011750	0.73	+0.4
2,574,961	+		TX73_011750	0.73	+0.2
2,574,978	+		TX73_011750	0.74	-0.5
2,574,987	+		TX73_011750	0.75	+0.2
2,574,995	-		TX73_011750	0.75	-1.3
2,574,995	-		TX73_011750	0.75	-0.5
2,574,995	-		TX73_011750	0.75	-0.7
2,574,997	+		TX73_011750	0.76	-0.5
2,575,005	-		TX73_011750	0.76	+0.8
2,575,005	-		TX73_011750	0.76	+1.0
2,575,014	+		TX73_011750	0.77	+0.0
2,575,021	-		TX73_011750	0.77	+0.5
2,575,040	-		TX73_011750	0.78	+0.1
2,575,050	-		TX73_011750	0.79	+0.1
2,575,119	-		TX73_011750	0.84	-0.3
2,575,120	+		TX73_011750	0.84	-0.3
2,575,143	+		TX73_011750	0.85	+0.0
2,575,153	+		TX73_011750	0.86	+0.8
2,575,153	+		TX73_011750	0.86	-0.1
2,575,180	-		TX73_011750	0.88	-0.8
2,575,194	+		TX73_011750	0.89	-0.9
2,575,204	+		TX73_011750	0.90	+0.1
2,575,212	-				+0.0
2,575,212	-				-0.6
2,575,214	-				+0.2
2,575,216	+				+0.2
2,575,237	+				-0.3
2,575,256	+				-0.1
2,575,261	+				-0.5
2,575,287	+				-0.8
2,575,287	+				+0.5
2,575,395	+				+0.2
2,575,422	-				+0.2
2,575,440	-				-0.1
2,575,445	-				+0.8
2,575,445	-				-0.6
2,575,452	+				-0.3
2,575,452	+				+0.5
2,575,455	-				+0.4
2,575,480	-				-0.2
2,575,490	-				+0.6
2,575,545	+				+0.5
2,575,548	+				-0.1
2,575,562	+				+0.1
2,575,602	-		TX73_011755	0.18	-0.5
2,575,602	-		TX73_011755	0.18	-0.6
2,575,613	+		TX73_011755	0.21	+0.6
2,575,644	-		TX73_011755	0.30	+0.3
2,575,644	-		TX73_011755	0.30	+0.6
2,575,644	-		TX73_011755	0.30	+0.2
2,575,656	+		TX73_011755	0.33	+0.9
2,575,660	+		TX73_011755	0.34	-0.2
2,575,664	-		TX73_011755	0.35	+0.1
2,575,667	+		TX73_011755	0.36	-0.9
2,575,680	-		TX73_011755	0.40	+0.8
2,575,711	-		TX73_011755	0.49	-0.1
2,575,711	-		TX73_011755	0.49	-0.5
2,575,725	+		TX73_011755	0.53	-0.5
2,575,748	+		TX73_011755	0.59	+0.1
2,575,760	-		TX73_011755	0.63	+0.3
2,575,762	+		TX73_011755	0.64	-0.6
2,575,820	+		TX73_011755	0.80	+0.1
2,575,820	+		TX73_011755	0.80	-0.1
2,575,820	+		TX73_011755	0.80	-0.1
2,575,864	+				+0.2
2,575,872	-				+0.9
2,575,882	+				+0.1
2,575,884	+				-0.7
2,575,896	+				+0.4
2,575,898	-				+0.0
2,575,900	+				+0.3
2,575,988	+				+0.1
2,576,049	+				+0.3
2,576,061	+				-0.9
2,576,088	-				-0.5
2,576,088	-				-0.5
2,576,158	+		TX73_011760	0.19	+0.5
2,576,158	+		TX73_011760	0.19	-0.2
2,576,180	+		TX73_011760	0.30	-0.0
2,576,198	-		TX73_011760	0.38	+0.2
2,576,241	+		TX73_011760	0.58	+0.4
2,576,248	+		TX73_011760	0.61	+0.5
2,576,248	+		TX73_011760	0.61	+1.1
2,576,275	+		TX73_011760	0.74	-0.2
2,576,346	+				-0.4