Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011620

Experiment: PM with succinate and Sodium Formate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate anaerobic with light
2,544,229	-		TX73_011615	0.28	-0.8
2,544,236	-		TX73_011615	0.29	+0.0
2,544,265	+		TX73_011615	0.32	+0.2
2,544,268	-		TX73_011615	0.32	+0.2
2,544,269	+		TX73_011615	0.32	+0.3
2,544,270	+		TX73_011615	0.33	-0.4
2,544,273	-		TX73_011615	0.33	+0.1
2,544,277	-		TX73_011615	0.33	-0.7
2,544,278	-		TX73_011615	0.33	+0.9
2,544,278	-		TX73_011615	0.33	-0.5
2,544,295	+		TX73_011615	0.35	+0.4
2,544,296	+		TX73_011615	0.35	+0.3
2,544,318	+		TX73_011615	0.38	+0.3
2,544,319	+		TX73_011615	0.38	-0.9
2,544,327	-		TX73_011615	0.39	-1.1
2,544,330	-		TX73_011615	0.39	-0.2
2,544,330	-		TX73_011615	0.39	-0.2
2,544,384	+		TX73_011615	0.45	-0.9
2,544,404	-		TX73_011615	0.47	-0.6
2,544,409	+		TX73_011615	0.47	-0.5
2,544,439	+		TX73_011615	0.51	+1.4
2,544,447	+		TX73_011615	0.52	+0.0
2,544,450	-		TX73_011615	0.52	+0.0
2,544,462	+		TX73_011615	0.53	+0.2
2,544,470	-		TX73_011615	0.54	-0.8
2,544,470	-		TX73_011615	0.54	-0.5
2,544,499	-		TX73_011615	0.57	-0.3
2,544,523	+		TX73_011615	0.60	+0.5
2,544,532	-		TX73_011615	0.61	-0.2
2,544,561	+		TX73_011615	0.64	-0.2
2,544,561	+		TX73_011615	0.64	-0.6
2,544,568	+		TX73_011615	0.65	-0.0
2,544,568	+		TX73_011615	0.65	-0.4
2,544,568	+		TX73_011615	0.65	-0.1
2,544,569	-		TX73_011615	0.65	+0.4
2,544,592	+		TX73_011615	0.67	-0.0
2,544,599	+		TX73_011615	0.68	-0.9
2,544,600	-		TX73_011615	0.68	-1.0
2,544,607	-		TX73_011615	0.69	-0.6
2,544,648	-		TX73_011615	0.73	-0.5
2,544,648	-		TX73_011615	0.73	-0.4
2,544,661	-		TX73_011615	0.74	-0.4
2,544,661	-		TX73_011615	0.74	-0.7
2,544,662	+		TX73_011615	0.75	+0.0
2,544,667	+		TX73_011615	0.75	-0.1
2,544,669	-		TX73_011615	0.75	+0.0
2,544,675	-		TX73_011615	0.76	-0.4
2,544,677	+		TX73_011615	0.76	+0.7
2,544,677	+		TX73_011615	0.76	-0.6
2,544,704	-		TX73_011615	0.79	+0.1
2,544,704	-		TX73_011615	0.79	-0.6
2,544,725	+		TX73_011615	0.81	-0.3
2,544,727	-		TX73_011615	0.82	-0.9
2,544,762	-		TX73_011615	0.85	+0.2
2,544,790	+		TX73_011615	0.88	-0.3
2,544,792	-		TX73_011615	0.89	-0.5
2,544,794	+		TX73_011615	0.89	-0.2
2,544,801	+		TX73_011615	0.89	-0.9
2,544,809	-				-0.4
2,544,817	+				-1.2
2,544,817	+				-0.2
2,544,817	+				-0.2
2,544,817	+				-1.3
2,544,818	-				-0.7
2,544,844	+				-0.2
2,544,844	+				-0.6
2,544,844	+				+0.1
2,544,844	+				-1.1
2,544,852	-				-1.0
2,544,852	-				-0.3
2,544,852	-				-1.7
2,544,852	-				-0.2
2,544,874	-				-0.4
2,544,901	+				-0.9
2,544,901	+				-0.3
2,544,949	+				-0.4
2,544,968	+				+0.5
2,544,973	+				+0.1
2,544,981	-				-0.5
2,544,981	-				-0.8
2,544,987	+				-0.0
2,545,015	+				-0.9
2,545,015	+				-0.2
2,545,023	-				-0.8
2,545,023	-				-0.1
2,545,023	-				+0.1
2,545,023	-				-0.9
2,545,051	+				-0.3
2,545,059	-				-0.3
2,545,061	+				-1.0
2,545,112	+				-0.3
2,545,117	+				+0.0
2,545,117	+				-0.2
2,545,139	+				-0.3
2,545,147	-				+0.6
2,545,154	+				+0.2
2,545,162	-				+0.4
2,545,165	+				-0.0
2,545,166	+				-0.4
2,545,169	-				+0.0
2,545,174	-				+0.5
2,545,206	-				-1.4
2,545,222	-				+0.0
2,545,254	+				-1.0
2,545,254	+				+0.5
2,545,262	-				+0.6
2,545,273	+				-0.6
2,545,273	+				-1.1
2,545,281	-				-0.6
2,545,330	+				-0.2
2,545,358	+		TX73_011620	0.12	-0.9
2,545,428	+		TX73_011620	0.19	-1.0
2,545,428	+		TX73_011620	0.19	-0.7
2,545,428	+		TX73_011620	0.19	-0.4
2,545,428	+		TX73_011620	0.19	+0.8
2,545,436	-		TX73_011620	0.20	-0.4
2,545,436	-		TX73_011620	0.20	+0.8
2,545,436	-		TX73_011620	0.20	-0.5
2,545,450	-		TX73_011620	0.21	-0.5
2,545,451	-		TX73_011620	0.21	+0.8
2,545,452	-		TX73_011620	0.21	+0.4
2,545,459	-		TX73_011620	0.22	-0.4
2,545,465	-		TX73_011620	0.23	-0.0
2,545,509	-		TX73_011620	0.27	-0.0
2,545,511	-		TX73_011620	0.27	-0.2
2,545,564	+		TX73_011620	0.32	-0.4
2,545,564	+		TX73_011620	0.32	-0.5
2,545,578	-		TX73_011620	0.34	-0.3
2,545,585	+		TX73_011620	0.34	+0.0
2,545,585	+		TX73_011620	0.34	+0.0
2,545,585	+		TX73_011620	0.34	+0.9
2,545,593	-		TX73_011620	0.35	-0.2
2,545,595	+		TX73_011620	0.35	-0.1
2,545,595	+		TX73_011620	0.35	-0.1
2,545,598	-		TX73_011620	0.36	-0.7
2,545,603	-		TX73_011620	0.36	-0.7
2,545,603	-		TX73_011620	0.36	+0.2
2,545,603	-		TX73_011620	0.36	-0.1
2,545,603	-		TX73_011620	0.36	-0.6
2,545,604	-		TX73_011620	0.36	-0.1
2,545,609	-		TX73_011620	0.37	-0.5
2,545,616	-		TX73_011620	0.37	-0.5
2,545,618	+		TX73_011620	0.37	-0.6
2,545,639	-		TX73_011620	0.39	-0.1
2,545,641	-		TX73_011620	0.40	+0.2
2,545,648	+		TX73_011620	0.40	-0.3
2,545,656	-		TX73_011620	0.41	-0.4
2,545,657	+		TX73_011620	0.41	+0.1
2,545,662	+		TX73_011620	0.42	+0.2
2,545,662	+		TX73_011620	0.42	-1.0
2,545,664	-		TX73_011620	0.42	-0.4
2,545,667	+		TX73_011620	0.42	-0.6
2,545,675	-		TX73_011620	0.43	+0.0
2,545,730	+		TX73_011620	0.48	-0.7
2,545,734	+		TX73_011620	0.49	-0.4
2,545,753	+		TX73_011620	0.50	-0.5
2,545,785	+		TX73_011620	0.54	-0.6
2,545,801	-		TX73_011620	0.55	+0.2
2,545,849	+		TX73_011620	0.60	-0.2
2,545,909	+		TX73_011620	0.66	-0.6
2,545,917	-		TX73_011620	0.66	-0.3
2,545,944	+		TX73_011620	0.69	+0.2
2,545,968	+		TX73_011620	0.71	-1.1
2,545,974	-		TX73_011620	0.72	-0.0
2,545,988	+		TX73_011620	0.73	-0.2
2,545,988	+		TX73_011620	0.73	+0.5
2,545,995	-		TX73_011620	0.74	-0.2
2,545,995	-		TX73_011620	0.74	+0.2
2,546,025	+		TX73_011620	0.77	+0.0
2,546,033	-		TX73_011620	0.77	-0.6
2,546,043	-		TX73_011620	0.78	-1.7
2,546,075	-		TX73_011620	0.82	+0.4
2,546,120	+		TX73_011620	0.86	-0.6
2,546,128	-		TX73_011620	0.87	-0.1
2,546,130	-		TX73_011620	0.87	+0.1
2,546,145	+		TX73_011620	0.88	+0.2
2,546,168	+				-0.6
2,546,168	+				+0.4
2,546,171	-				-0.6
2,546,174	+				-0.2
2,546,176	-				+0.2
2,546,176	-				-0.8
2,546,195	-				-0.6
2,546,201	-				-0.1
2,546,214	+				+0.7
2,546,258	+				-1.2
2,546,266	-				-0.2
2,546,295	+				+0.4
2,546,304	+				-0.0
2,546,329	-				-0.1
2,546,330	+				-1.4
2,546,338	-				-0.0
2,546,338	-				-0.5
2,546,338	-				+0.0
2,546,338	-				-0.7
2,546,426	-				-0.5
2,546,439	-				-1.6
2,546,439	-				-0.2
2,546,457	+				-0.4
2,546,465	-				+1.1
2,546,488	+				-0.8
2,546,488	+				-0.9
2,546,521	+				-0.3
2,546,528	+				-1.2
2,546,528	+				+0.2
2,546,528	+				-0.2
2,546,536	-				-0.9
2,546,537	-				-0.4
2,546,550	-				+0.1
2,546,550	-				-0.3
2,546,583	+				-0.8
2,546,591	-				-0.5
2,546,604	+				-0.2
2,546,604	+				-0.1
2,546,604	+				-1.6
2,546,604	+				-0.4
2,546,604	+				+0.3
2,546,604	+				+0.2
2,546,604	+				+0.2
2,546,612	-				-0.0
2,546,612	-				-0.8
2,546,612	-				+0.1
2,546,670	-				-0.2
2,546,707	-				-1.0
2,546,713	+				-0.5
2,546,736	-		TX73_011625	0.10	+0.2
2,546,772	+		TX73_011625	0.11	+0.6
2,546,790	-		TX73_011625	0.12	+0.1
2,546,800	-		TX73_011625	0.12	-0.1
2,546,859	+		TX73_011625	0.13	-2.7
2,546,866	+		TX73_011625	0.13	+0.3
2,546,867	-		TX73_011625	0.13	-0.1
2,546,889	+		TX73_011625	0.14	+0.4
2,546,897	-		TX73_011625	0.14	-1.2
2,546,934	+		TX73_011625	0.15	-0.3
2,546,984	+		TX73_011625	0.16	-0.4
2,547,003	-		TX73_011625	0.17	-0.2
2,547,073	+		TX73_011625	0.18	-0.2
2,547,084	+		TX73_011625	0.18	-0.7
2,547,084	+		TX73_011625	0.18	+0.2
2,547,084	+		TX73_011625	0.18	-0.4
2,547,084	+		TX73_011625	0.18	-0.1
2,547,084	+		TX73_011625	0.18	-0.4
2,547,084	+		TX73_011625	0.18	-0.8
2,547,084	+		TX73_011625	0.18	+0.4
2,547,084	+		TX73_011625	0.18	-1.8
2,547,084	+		TX73_011625	0.18	-0.1
2,547,084	+		TX73_011625	0.18	-0.4
2,547,084	+		TX73_011625	0.18	-0.4
2,547,084	+		TX73_011625	0.18	-1.8
2,547,084	+		TX73_011625	0.18	+0.2
2,547,084	+		TX73_011625	0.18	-0.3
2,547,092	-		TX73_011625	0.19	+0.6
2,547,092	-		TX73_011625	0.19	+0.2
2,547,092	-		TX73_011625	0.19	-0.6
2,547,092	-		TX73_011625	0.19	-0.2
2,547,092	-		TX73_011625	0.19	-1.2
2,547,092	-		TX73_011625	0.19	-0.7
2,547,092	-		TX73_011625	0.19	-1.1
2,547,092	-		TX73_011625	0.19	+0.2
2,547,092	-		TX73_011625	0.19	-0.9
2,547,092	-		TX73_011625	0.19	-0.6
2,547,092	-		TX73_011625	0.19	+0.2
2,547,092	-		TX73_011625	0.19	+0.1
2,547,092	-		TX73_011625	0.19	+0.5
2,547,092	-		TX73_011625	0.19	-0.4
2,547,092	-		TX73_011625	0.19	-0.6
2,547,092	-		TX73_011625	0.19	+0.7
2,547,099	+		TX73_011625	0.19	-0.8
2,547,104	+		TX73_011625	0.19	-0.9
2,547,114	-		TX73_011625	0.19	+0.1
2,547,116	-		TX73_011625	0.19	+0.2
2,547,120	-		TX73_011625	0.19	-0.6
2,547,127	+		TX73_011625	0.19	-0.6
2,547,132	+		TX73_011625	0.20	-0.8
2,547,204	-		TX73_011625	0.21	-1.2
2,547,213	+		TX73_011625	0.21	-1.6
2,547,242	-		TX73_011625	0.22	-0.4
2,547,242	-		TX73_011625	0.22	-0.5
2,547,253	-		TX73_011625	0.22	+0.2