Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011570

Experiment: PM with succinate and Sodium Formate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate anaerobic with light
2,537,682	+		TX73_011560	0.50	+0.3
2,537,700	+		TX73_011560	0.57	-1.0
2,537,700	+		TX73_011560	0.57	+0.2
2,537,708	-		TX73_011560	0.60	-0.6
2,537,708	-		TX73_011560	0.60	+0.6
2,537,708	-		TX73_011560	0.60	-1.0
2,537,708	-		TX73_011560	0.60	+1.1
2,537,708	-		TX73_011560	0.60	-1.2
2,537,710	-		TX73_011560	0.61	-0.5
2,537,710	-		TX73_011560	0.61	+0.0
2,537,718	+		TX73_011560	0.64	+0.0
2,537,726	-		TX73_011560	0.67	+0.7
2,537,784	-				-0.1
2,537,820	-				+0.1
2,537,852	-				+0.3
2,537,866	+		TX73_011565	0.10	+0.1
2,537,866	+		TX73_011565	0.10	+0.5
2,537,874	+		TX73_011565	0.11	-0.3
2,537,924	+		TX73_011565	0.19	+0.6
2,537,924	+		TX73_011565	0.19	-0.2
2,537,932	-		TX73_011565	0.20	-1.2
2,537,932	-		TX73_011565	0.20	+0.8
2,537,934	+		TX73_011565	0.21	-0.2
2,537,955	-		TX73_011565	0.24	+1.5
2,537,970	-		TX73_011565	0.26	-0.3
2,537,970	-		TX73_011565	0.26	-3.5
2,537,976	+		TX73_011565	0.27	+0.4
2,537,977	-		TX73_011565	0.27	+0.2
2,537,987	+		TX73_011565	0.29	-0.2
2,537,993	-		TX73_011565	0.30	-0.8
2,537,994	+		TX73_011565	0.30	-0.5
2,538,020	-		TX73_011565	0.34	-0.5
2,538,043	-		TX73_011565	0.38	-0.8
2,538,075	-		TX73_011565	0.43	+0.1
2,538,076	-		TX73_011565	0.43	-0.4
2,538,103	-		TX73_011565	0.47	+0.1
2,538,104	-		TX73_011565	0.47	+0.5
2,538,125	+		TX73_011565	0.51	-0.7
2,538,131	+		TX73_011565	0.51	+0.2
2,538,131	+		TX73_011565	0.51	+0.2
2,538,136	+		TX73_011565	0.52	+1.4
2,538,136	+		TX73_011565	0.52	-0.2
2,538,146	+		TX73_011565	0.54	+0.0
2,538,224	+		TX73_011565	0.66	-0.5
2,538,250	+		TX73_011565	0.70	+0.0
2,538,259	-		TX73_011565	0.72	-0.4
2,538,273	+		TX73_011565	0.74	-0.2
2,538,273	+		TX73_011565	0.74	-0.2
2,538,280	+		TX73_011565	0.75	-0.1
2,538,296	+		TX73_011565	0.77	+0.6
2,538,296	+		TX73_011565	0.77	-0.4
2,538,299	-		TX73_011565	0.78	+0.5
2,538,304	-		TX73_011565	0.79	-1.5
2,538,304	-		TX73_011565	0.79	-0.4
2,538,306	+		TX73_011565	0.79	+0.3
2,538,309	-		TX73_011565	0.79	-0.6
2,538,314	-		TX73_011565	0.80	-1.7
2,538,319	+		TX73_011565	0.81	-0.5
2,538,326	+		TX73_011565	0.82	+0.2
2,538,326	-		TX73_011565	0.82	-1.5
2,538,339	+		TX73_011565	0.84	+0.2
2,538,347	-		TX73_011565	0.85	-1.2
2,538,364	+		TX73_011565	0.88	-0.2
2,538,366	+		TX73_011565	0.88	-0.1
2,538,383	-				+0.2
2,538,409	-				+0.7
2,538,420	+				-0.4
2,538,428	-				-0.5
2,538,437	+				+0.5
2,538,446	+				-0.7
2,538,446	+				-0.8
2,538,446	+				-0.2
2,538,454	-				-0.4
2,538,469	-				-1.5
2,538,475	+				+0.1
2,538,485	-				-1.0
2,538,589	+				-0.0
2,538,589	+				-0.2
2,538,623	+				-0.1
2,538,629	-				-0.7
2,538,710	-				-0.2
2,538,723	-				-1.0
2,538,744	-		TX73_011570	0.11	+0.2
2,538,745	-		TX73_011570	0.11	-0.1
2,538,745	-		TX73_011570	0.11	+1.0
2,538,786	+		TX73_011570	0.16	-1.2
2,538,801	+		TX73_011570	0.17	+0.3
2,538,809	-		TX73_011570	0.18	-0.2
2,538,809	-		TX73_011570	0.18	-0.6
2,538,809	-		TX73_011570	0.18	+0.2
2,538,814	+		TX73_011570	0.19	+0.7
2,538,816	+		TX73_011570	0.19	-1.5
2,538,822	-		TX73_011570	0.20	-0.5
2,538,824	-		TX73_011570	0.20	+0.2
2,538,825	+		TX73_011570	0.20	-0.6
2,538,881	+		TX73_011570	0.26	+0.1
2,538,947	+		TX73_011570	0.34	-0.5
2,538,947	+		TX73_011570	0.34	-0.0
2,538,950	-		TX73_011570	0.34	-0.2
2,538,960	-		TX73_011570	0.35	-1.1
2,538,973	-		TX73_011570	0.37	+0.2
2,538,982	+		TX73_011570	0.38	-0.1
2,538,996	+		TX73_011570	0.39	-1.0
2,538,996	+		TX73_011570	0.39	-0.0
2,539,000	-		TX73_011570	0.40	-0.8
2,539,000	-		TX73_011570	0.40	-0.2
2,539,014	+		TX73_011570	0.41	+0.0
2,539,014	+		TX73_011570	0.41	-0.2
2,539,022	-		TX73_011570	0.42	-0.1
2,539,022	-		TX73_011570	0.42	-0.6
2,539,022	-		TX73_011570	0.42	+0.3
2,539,028	+		TX73_011570	0.43	+0.9
2,539,036	-		TX73_011570	0.44	+0.6
2,539,062	-		TX73_011570	0.46	-0.1
2,539,136	+		TX73_011570	0.55	-0.7
2,539,138	-		TX73_011570	0.55	-0.1
2,539,155	-		TX73_011570	0.57	-0.3
2,539,157	+		TX73_011570	0.57	-0.7
2,539,157	+		TX73_011570	0.57	+1.0
2,539,159	+		TX73_011570	0.57	-0.3
2,539,165	-		TX73_011570	0.58	-1.0
2,539,167	+		TX73_011570	0.58	+0.5
2,539,176	-		TX73_011570	0.59	-0.7
2,539,212	-		TX73_011570	0.63	-0.1
2,539,212	-		TX73_011570	0.63	-0.6
2,539,212	-		TX73_011570	0.63	+0.1
2,539,221	-		TX73_011570	0.64	+0.3
2,539,221	-		TX73_011570	0.64	-0.1
2,539,286	+		TX73_011570	0.71	+0.0
2,539,291	+		TX73_011570	0.72	-0.7
2,539,294	-		TX73_011570	0.72	-1.5
2,539,294	-		TX73_011570	0.72	+0.3
2,539,299	-		TX73_011570	0.73	-0.3
2,539,299	-		TX73_011570	0.73	-0.8
2,539,304	-		TX73_011570	0.73	-0.2
2,539,315	-		TX73_011570	0.74	+0.0
2,539,340	+		TX73_011570	0.77	-0.8
2,539,340	+		TX73_011570	0.77	-1.8
2,539,382	+		TX73_011570	0.82	-1.3
2,539,382	+		TX73_011570	0.82	+0.9
2,539,390	-		TX73_011570	0.83	+0.0
2,539,390	-		TX73_011570	0.83	-0.9
2,539,390	-		TX73_011570	0.83	+1.1
2,539,397	+		TX73_011570	0.83	-1.1
2,539,411	+		TX73_011570	0.85	-0.4
2,539,426	-		TX73_011570	0.87	-0.3
2,539,426	-		TX73_011570	0.87	-0.4
2,539,432	-		TX73_011570	0.87	-0.6
2,539,449	+		TX73_011570	0.89	-0.2
2,539,457	-				+0.3
2,539,487	-				+0.4
2,539,522	-				+0.4
2,539,541	+				+0.3
2,539,541	-				+0.5
2,539,541	-				-0.6
2,539,551	-				-0.1
2,539,561	-				+2.4
2,539,600	+		TX73_011575	0.21	+0.7
2,539,610	+		TX73_011575	0.24	-1.0
2,539,618	+		TX73_011575	0.27	-0.1
2,539,618	-		TX73_011575	0.27	-0.3
2,539,625	+		TX73_011575	0.30	-0.3
2,539,626	-		TX73_011575	0.30	-1.1
2,539,642	+		TX73_011575	0.36	+0.6
2,539,647	+		TX73_011575	0.38	+0.2
2,539,647	+		TX73_011575	0.38	-0.3
2,539,647	+		TX73_011575	0.38	-1.7
2,539,650	-		TX73_011575	0.39	-1.1
2,539,650	-		TX73_011575	0.39	-0.6
2,539,650	-		TX73_011575	0.39	+0.1
2,539,650	-		TX73_011575	0.39	-2.3
2,539,655	-		TX73_011575	0.41	-1.4
2,539,688	+		TX73_011575	0.52	+0.3
2,539,706	-		TX73_011575	0.59	+0.4
2,539,708	+		TX73_011575	0.59	-0.4
2,539,708	+		TX73_011575	0.59	+0.0
2,539,756	-		TX73_011575	0.77	-0.2
2,539,771	+		TX73_011575	0.82	+0.4
2,539,773	-		TX73_011575	0.83	-0.2
2,539,804	+				-0.2
2,539,810	+				+0.7
2,539,813	-				-0.7
2,539,823	-				-0.4
2,539,823	-				-0.5
2,539,847	+				-1.1
2,539,928	+				+0.2
2,539,935	-				-0.3
2,539,966	-				+0.1
2,540,015	+				-0.4
2,540,015	+				-0.8
2,540,015	+				+0.2
2,540,016	+				+2.0
2,540,024	-				+0.7
2,540,029	-				-0.8
2,540,034	-		TX73_011580	0.10	-0.7
2,540,044	+		TX73_011580	0.12	+0.2
2,540,044	+		TX73_011580	0.12	+0.1
2,540,057	+		TX73_011580	0.14	-0.6
2,540,065	-		TX73_011580	0.16	-0.5
2,540,080	+		TX73_011580	0.18	-0.4
2,540,093	+		TX73_011580	0.21	-2.3
2,540,096	-		TX73_011580	0.21	-0.7
2,540,101	-		TX73_011580	0.22	+0.4
2,540,104	+		TX73_011580	0.23	-0.2
2,540,114	+		TX73_011580	0.24	-1.3
2,540,122	-		TX73_011580	0.26	+0.5
2,540,127	+		TX73_011580	0.27	-0.3
2,540,129	+		TX73_011580	0.27	-0.4
2,540,158	-		TX73_011580	0.32	-1.0
2,540,167	+		TX73_011580	0.34	-0.5
2,540,189	-		TX73_011580	0.38	-0.3
2,540,219	+		TX73_011580	0.43	+0.1
2,540,235	+		TX73_011580	0.46	+0.4
2,540,245	+		TX73_011580	0.48	+0.6
2,540,245	+		TX73_011580	0.48	-0.6
2,540,245	+		TX73_011580	0.48	-0.9
2,540,247	+		TX73_011580	0.48	-1.0
2,540,253	-		TX73_011580	0.49	+0.3
2,540,273	+		TX73_011580	0.52	+0.4
2,540,281	-		TX73_011580	0.54	-1.0
2,540,367	-		TX73_011580	0.69	-0.1
2,540,376	-		TX73_011580	0.71	-0.7
2,540,398	-		TX73_011580	0.75	-1.4
2,540,417	+		TX73_011580	0.78	-0.5
2,540,439	-		TX73_011580	0.82	-0.7
2,540,447	+		TX73_011580	0.83	-0.6
2,540,455	-		TX73_011580	0.85	+0.1
2,540,455	-		TX73_011580	0.85	-0.3
2,540,473	+		TX73_011580	0.88	+0.6