Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011415

Experiment: PM with succinate and Sodium Formate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate anaerobic with light
2,491,843	+		TX73_011410	0.68	-0.6
2,491,848	+		TX73_011410	0.68	-0.2
2,491,874	-		TX73_011410	0.69	-0.4
2,491,943	+		TX73_011410	0.71	-0.8
2,491,945	-		TX73_011410	0.71	-0.7
2,491,951	-		TX73_011410	0.71	+0.1
2,491,953	+		TX73_011410	0.72	-0.5
2,491,953	+		TX73_011410	0.72	-0.3
2,491,972	+		TX73_011410	0.72	-0.5
2,491,972	+		TX73_011410	0.72	-0.8
2,491,976	+		TX73_011410	0.72	-1.1
2,492,081	+		TX73_011410	0.76	+0.5
2,492,131	-		TX73_011410	0.77	-0.1
2,492,145	-		TX73_011410	0.78	-0.2
2,492,165	+		TX73_011410	0.78	+0.7
2,492,178	-		TX73_011410	0.79	-0.3
2,492,197	+		TX73_011410	0.79	-0.2
2,492,211	+		TX73_011410	0.80	-0.5
2,492,276	+		TX73_011410	0.82	+0.4
2,492,276	+		TX73_011410	0.82	+0.0
2,492,276	+		TX73_011410	0.82	-0.6
2,492,281	+		TX73_011410	0.82	-1.1
2,492,284	-		TX73_011410	0.82	+0.3
2,492,284	-		TX73_011410	0.82	-0.9
2,492,287	+		TX73_011410	0.82	-1.5
2,492,295	-		TX73_011410	0.82	+0.0
2,492,316	-		TX73_011410	0.83	-0.1
2,492,346	-		TX73_011410	0.84	+0.0
2,492,409	+		TX73_011410	0.86	-0.5
2,492,422	-		TX73_011410	0.87	+0.3
2,492,423	+		TX73_011410	0.87	-0.2
2,492,436	-		TX73_011410	0.87	-0.5
2,492,438	+		TX73_011410	0.87	+0.1
2,492,438	+		TX73_011410	0.87	-0.4
2,492,438	+		TX73_011410	0.87	-1.1
2,492,438	+		TX73_011410	0.87	-0.8
2,492,446	-		TX73_011410	0.87	-0.1
2,492,446	-		TX73_011410	0.87	-0.5
2,492,446	-		TX73_011410	0.87	-0.6
2,492,446	-		TX73_011410	0.87	+0.2
2,492,446	-		TX73_011410	0.87	-0.3
2,492,503	+		TX73_011410	0.89	+0.1
2,492,519	+		TX73_011410	0.90	+0.3
2,492,519	+		TX73_011410	0.90	-0.5
2,492,519	+		TX73_011410	0.90	-0.1
2,492,519	+		TX73_011410	0.90	-1.1
2,492,519	+		TX73_011410	0.90	+0.3
2,492,519	+		TX73_011410	0.90	-0.9
2,492,519	+		TX73_011410	0.90	-0.8
2,492,519	+		TX73_011410	0.90	-0.9
2,492,519	+		TX73_011410	0.90	-0.8
2,492,519	+		TX73_011410	0.90	-0.8
2,492,527	-		TX73_011410	0.90	-0.5
2,492,527	-		TX73_011410	0.90	+0.3
2,492,527	-		TX73_011410	0.90	-0.0
2,492,527	-		TX73_011410	0.90	-0.6
2,492,527	-		TX73_011410	0.90	-0.5
2,492,527	-		TX73_011410	0.90	-0.3
2,492,543	+				-0.8
2,492,543	+				-0.1
2,492,559	+				+0.3
2,492,583	+				-0.3
2,492,583	+				-0.3
2,492,613	+				+0.1
2,492,613	+				-0.2
2,492,621	-				+0.1
2,492,622	-				-1.4
2,492,633	+				-0.9
2,492,633	+				-0.3
2,492,633	+				-0.4
2,492,633	+				-0.1
2,492,633	+				-0.5
2,492,638	+				+0.1
2,492,641	-				-0.2
2,492,643	+				-0.2
2,492,646	-				-1.0
2,492,654	+				-0.7
2,492,654	+				-0.1
2,492,660	-				+0.0
2,492,710	-				+0.3
2,492,749	+				-0.3
2,492,757	-				+0.6
2,492,768	-				-1.6
2,492,774	-				-0.2
2,492,787	-				-0.2
2,492,802	-				+0.6
2,492,804	+				-0.4
2,492,844	+				-0.4
2,492,872	+				+0.7
2,492,882	+				+0.3
2,492,930	-				-0.4
2,492,944	-				+0.4
2,493,004	-				-0.7
2,493,011	-				-0.7
2,493,011	-				-0.8
2,493,035	+		TX73_011415	0.11	-0.0
2,493,040	+		TX73_011415	0.11	+0.1
2,493,040	+		TX73_011415	0.11	-0.0
2,493,040	+		TX73_011415	0.11	+0.2
2,493,048	-		TX73_011415	0.12	-0.0
2,493,048	-		TX73_011415	0.12	-0.2
2,493,081	-		TX73_011415	0.13	-0.6
2,493,115	-		TX73_011415	0.15	-0.9
2,493,138	+		TX73_011415	0.16	+0.3
2,493,146	-		TX73_011415	0.17	-0.6
2,493,158	-		TX73_011415	0.18	-0.1
2,493,197	+		TX73_011415	0.20	+0.7
2,493,201	+		TX73_011415	0.20	+0.2
2,493,205	-		TX73_011415	0.20	+0.3
2,493,207	+		TX73_011415	0.20	+0.1
2,493,210	-		TX73_011415	0.20	-0.3
2,493,212	+		TX73_011415	0.20	-0.2
2,493,217	+		TX73_011415	0.21	-0.4
2,493,217	+		TX73_011415	0.21	-0.3
2,493,220	-		TX73_011415	0.21	-0.3
2,493,222	+		TX73_011415	0.21	+0.8
2,493,224	+		TX73_011415	0.21	-0.3
2,493,225	-		TX73_011415	0.21	-0.2
2,493,225	-		TX73_011415	0.21	-0.5
2,493,225	-		TX73_011415	0.21	-0.4
2,493,225	-		TX73_011415	0.21	-0.8
2,493,227	-		TX73_011415	0.21	+0.2
2,493,229	+		TX73_011415	0.21	-0.8
2,493,231	+		TX73_011415	0.21	-0.2
2,493,231	+		TX73_011415	0.21	-1.0
2,493,231	+		TX73_011415	0.21	-0.2
2,493,232	-		TX73_011415	0.21	-2.0
2,493,237	-		TX73_011415	0.22	-0.7
2,493,249	-		TX73_011415	0.22	+0.0
2,493,294	-		TX73_011415	0.25	-0.5
2,493,354	+		TX73_011415	0.28	-0.0
2,493,356	+		TX73_011415	0.28	+0.1
2,493,356	+		TX73_011415	0.28	+0.1
2,493,368	+		TX73_011415	0.29	-0.4
2,493,368	+		TX73_011415	0.29	-0.2
2,493,373	+		TX73_011415	0.29	+0.2
2,493,373	+		TX73_011415	0.29	-0.3
2,493,373	+		TX73_011415	0.29	+0.6
2,493,376	-		TX73_011415	0.29	-2.3
2,493,391	+		TX73_011415	0.30	-0.4
2,493,392	-		TX73_011415	0.30	+0.1
2,493,403	+		TX73_011415	0.31	-0.5
2,493,409	-		TX73_011415	0.31	-0.6
2,493,423	+		TX73_011415	0.32	-0.1
2,493,439	-		TX73_011415	0.33	-0.5
2,493,439	-		TX73_011415	0.33	-0.5
2,493,483	-		TX73_011415	0.35	+0.2
2,493,483	-		TX73_011415	0.35	-0.8
2,493,547	-		TX73_011415	0.38	+0.2
2,493,558	+		TX73_011415	0.39	+0.0
2,493,558	+		TX73_011415	0.39	-0.3
2,493,565	-		TX73_011415	0.39	-0.2
2,493,566	-		TX73_011415	0.39	+0.2
2,493,566	-		TX73_011415	0.39	-0.5
2,493,580	+		TX73_011415	0.40	+0.4
2,493,602	-		TX73_011415	0.41	-1.1
2,493,602	-		TX73_011415	0.41	+0.1
2,493,603	-		TX73_011415	0.41	-0.7
2,493,611	+		TX73_011415	0.42	+0.3
2,493,611	+		TX73_011415	0.42	+1.0
2,493,624	-		TX73_011415	0.43	-1.0
2,493,645	+		TX73_011415	0.44	-1.1
2,493,650	+		TX73_011415	0.44	-1.1
2,493,650	+		TX73_011415	0.44	+0.4
2,493,650	+		TX73_011415	0.44	-0.1
2,493,658	-		TX73_011415	0.44	-0.3
2,493,658	-		TX73_011415	0.44	+0.4
2,493,658	-		TX73_011415	0.44	+0.8
2,493,669	+		TX73_011415	0.45	-1.4
2,493,677	-		TX73_011415	0.45	-0.0
2,493,732	-		TX73_011415	0.48	-0.6
2,493,783	-		TX73_011415	0.51	-0.8
2,493,783	-		TX73_011415	0.51	-1.8
2,493,790	+		TX73_011415	0.52	-0.3
2,493,791	+		TX73_011415	0.52	-0.8
2,493,798	+		TX73_011415	0.52	-1.7
2,493,798	-		TX73_011415	0.52	-0.2
2,493,798	-		TX73_011415	0.52	-0.0
2,493,799	-		TX73_011415	0.52	+0.7
2,493,816	-		TX73_011415	0.53	+0.0
2,493,818	-		TX73_011415	0.53	-0.3
2,493,861	+		TX73_011415	0.55	-1.5
2,493,920	+		TX73_011415	0.59	-0.5
2,493,940	-		TX73_011415	0.60	-0.3
2,493,956	-		TX73_011415	0.60	-0.7
2,493,994	+		TX73_011415	0.63	-0.3
2,493,994	+		TX73_011415	0.63	-0.8
2,494,002	-		TX73_011415	0.63	-0.3
2,494,002	-		TX73_011415	0.63	-0.4
2,494,032	-		TX73_011415	0.65	-0.5
2,494,037	+		TX73_011415	0.65	+0.2
2,494,042	+		TX73_011415	0.65	+0.4
2,494,045	-		TX73_011415	0.65	-1.1
2,494,050	-		TX73_011415	0.66	-0.3
2,494,057	+		TX73_011415	0.66	-0.1
2,494,065	-		TX73_011415	0.66	-0.3
2,494,069	+		TX73_011415	0.67	-0.7
2,494,147	+		TX73_011415	0.71	-0.1
2,494,154	-		TX73_011415	0.71	+0.3
2,494,159	+		TX73_011415	0.71	-0.7
2,494,167	-		TX73_011415	0.72	+0.2
2,494,214	+		TX73_011415	0.74	-0.4
2,494,235	+		TX73_011415	0.75	-0.5
2,494,243	-		TX73_011415	0.76	-0.5
2,494,243	-		TX73_011415	0.76	-0.3
2,494,243	-		TX73_011415	0.76	-0.1
2,494,259	-		TX73_011415	0.77	-0.6
2,494,279	+		TX73_011415	0.78	-0.8
2,494,325	+		TX73_011415	0.80	-0.2
2,494,325	+		TX73_011415	0.80	-0.3
2,494,325	+		TX73_011415	0.80	-0.3
2,494,325	+		TX73_011415	0.80	-0.2
2,494,333	-		TX73_011415	0.81	+0.1
2,494,333	-		TX73_011415	0.81	-0.8
2,494,376	-		TX73_011415	0.83	-2.5
2,494,394	+		TX73_011415	0.84	-0.8
2,494,394	+		TX73_011415	0.84	+0.2
2,494,394	+		TX73_011415	0.84	-0.2
2,494,394	+		TX73_011415	0.84	+0.4
2,494,394	+		TX73_011415	0.84	-0.7
2,494,402	+		TX73_011415	0.84	-0.3
2,494,402	-		TX73_011415	0.84	-0.6
2,494,402	-		TX73_011415	0.84	-2.1
2,494,417	+		TX73_011415	0.85	-0.2
2,494,425	-		TX73_011415	0.86	-0.7
2,494,425	-		TX73_011415	0.86	-0.8
2,494,425	-		TX73_011415	0.86	+0.0
2,494,425	-		TX73_011415	0.86	-0.4
2,494,428	+		TX73_011415	0.86	-2.2
2,494,429	+		TX73_011415	0.86	-0.7
2,494,435	-		TX73_011415	0.86	+0.2
2,494,447	-		TX73_011415	0.87	-0.1
2,494,459	+		TX73_011415	0.88	+0.1
2,494,473	+		TX73_011415	0.88	-1.2
2,494,473	+		TX73_011415	0.88	+0.3
2,494,481	+		TX73_011415	0.89	+0.0
2,494,489	-		TX73_011415	0.89	+0.2
2,494,489	-		TX73_011415	0.89	-1.2
2,494,537	-				-1.1
2,494,539	+				+0.1
2,494,547	-				-0.5
2,494,547	-				-1.2
2,494,547	-				-0.0
2,494,552	-				-0.3
2,494,559	-				-0.6
2,494,561	-				+0.2
2,494,589	+				+0.0
2,494,606	+				+0.5
2,494,618	+				-0.5
2,494,618	+				-0.1
2,494,626	-				+0.2
2,494,626	-				-0.0
2,494,628	+				-0.1
2,494,629	+				-0.0
2,494,631	-				-0.5
2,494,635	-				-0.8
2,494,637	-				-1.2
2,494,642	+				-0.6
2,494,658	-				-0.3
2,494,667	-				+0.5
2,494,689	-				+0.7
2,494,689	-				-0.4
2,494,689	-				+0.4
2,494,696	+				-0.6
2,494,717	-				+0.6
2,494,718	-				-0.0
2,494,723	-				-0.6
2,494,723	-				+0.1
2,494,725	+				-0.1
2,494,725	+				-0.4
2,494,761	+				-0.4
2,494,769	-				+0.4
2,494,773	+				-0.8
2,494,799	-		TX73_011420	0.10	-0.3
2,494,817	+		TX73_011420	0.12	-0.4
2,494,826	+		TX73_011420	0.12	-1.3
2,494,834	-		TX73_011420	0.13	-0.5
2,494,834	-		TX73_011420	0.13	-0.1
2,494,862	+		TX73_011420	0.15	-0.8
2,494,870	-		TX73_011420	0.16	-0.4
2,494,870	-		TX73_011420	0.16	+0.0
2,494,870	-		TX73_011420	0.16	+1.1
2,494,870	-		TX73_011420	0.16	-0.3
2,494,891	-		TX73_011420	0.18	-0.6
2,494,891	-		TX73_011420	0.18	+0.1
2,494,910	+		TX73_011420	0.19	-0.6
2,494,918	-		TX73_011420	0.20	-1.4
2,494,934	+		TX73_011420	0.22	+0.0
2,494,942	-		TX73_011420	0.22	+0.2
2,494,944	-		TX73_011420	0.22	-0.0
2,494,949	-		TX73_011420	0.23	-0.1
2,494,980	+		TX73_011420	0.25	-0.5
2,494,992	+		TX73_011420	0.26	-0.3
2,494,997	+		TX73_011420	0.27	+0.1
2,495,022	+		TX73_011420	0.29	-0.6
2,495,054	-		TX73_011420	0.32	-0.5
2,495,067	+		TX73_011420	0.33	-0.8
2,495,087	-		TX73_011420	0.34	-1.0
2,495,092	+		TX73_011420	0.35	-0.6
2,495,114	+		TX73_011420	0.37	+0.3
2,495,133	-		TX73_011420	0.38	-0.2
2,495,169	+		TX73_011420	0.41	+1.0
2,495,177	-		TX73_011420	0.42	+0.1
2,495,182	+		TX73_011420	0.42	-0.1
2,495,214	-		TX73_011420	0.45	+0.9
2,495,271	+		TX73_011420	0.50	+0.1
2,495,279	-		TX73_011420	0.51	-0.0
2,495,298	+		TX73_011420	0.52	-0.9
2,495,300	-		TX73_011420	0.52	+0.3
2,495,306	-		TX73_011420	0.53	-0.5
2,495,308	+		TX73_011420	0.53	-0.7
2,495,308	+		TX73_011420	0.53	-0.5
2,495,316	-		TX73_011420	0.54	+0.2
2,495,316	-		TX73_011420	0.54	-0.3
2,495,316	-		TX73_011420	0.54	-0.2
2,495,331	-		TX73_011420	0.55	-0.3
2,495,331	-		TX73_011420	0.55	+0.1
2,495,331	-		TX73_011420	0.55	+0.4
2,495,331	-		TX73_011420	0.55	+0.4
2,495,352	+		TX73_011420	0.57	-0.3
2,495,352	-		TX73_011420	0.57	-0.2
2,495,357	+		TX73_011420	0.57	-1.2
2,495,357	+		TX73_011420	0.57	-0.2
2,495,360	-		TX73_011420	0.57	+0.8
2,495,360	-		TX73_011420	0.57	-0.3
2,495,365	-		TX73_011420	0.58	-0.4
2,495,365	-		TX73_011420	0.58	+0.2
2,495,365	-		TX73_011420	0.58	-0.7
2,495,427	-		TX73_011420	0.63	-0.6
2,495,436	+		TX73_011420	0.64	-0.4
2,495,436	+		TX73_011420	0.64	-0.5
2,495,439	-		TX73_011420	0.64	-0.7
2,495,484	+		TX73_011420	0.68	+0.6
2,495,496	+		TX73_011420	0.69	-0.5
2,495,503	+		TX73_011420	0.70	+0.2
2,495,508	+		TX73_011420	0.70	-0.4
2,495,508	+		TX73_011420	0.70	-0.1
2,495,508	+		TX73_011420	0.70	-0.4
2,495,513	+		TX73_011420	0.70	-0.2
2,495,516	-		TX73_011420	0.71	+0.6
2,495,518	+		TX73_011420	0.71	+0.9
2,495,518	+		TX73_011420	0.71	-0.5
2,495,518	-		TX73_011420	0.71	-0.0
2,495,520	+		TX73_011420	0.71	-1.2
2,495,520	+		TX73_011420	0.71	-0.9
2,495,520	+		TX73_011420	0.71	+0.1
2,495,520	+		TX73_011420	0.71	+0.2
2,495,520	+		TX73_011420	0.71	-0.3
2,495,520	+		TX73_011420	0.71	-0.9
2,495,526	-		TX73_011420	0.71	-0.1
2,495,526	-		TX73_011420	0.71	-0.4
2,495,527	+		TX73_011420	0.72	+0.1
2,495,528	-		TX73_011420	0.72	-0.6
2,495,528	-		TX73_011420	0.72	-1.8
2,495,599	+		TX73_011420	0.78	-0.7
2,495,605	-		TX73_011420	0.78	+0.5
2,495,614	-		TX73_011420	0.79	+0.0
2,495,657	-		TX73_011420	0.83	-1.7
2,495,668	+		TX73_011420	0.83	+0.3
2,495,673	+		TX73_011420	0.84	-0.1