Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023835

Experiment: PM with succinate and Sodium Formate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate anaerobic with light
5,172,283	+		TX73_023825	0.77	-1.5
5,172,317	+		TX73_023825	0.79	-0.5
5,172,317	+		TX73_023825	0.79	-0.9
5,172,326	-		TX73_023825	0.79	-0.0
5,172,342	+		TX73_023825	0.80	+0.4
5,172,376	+		TX73_023825	0.83	+0.6
5,172,379	-		TX73_023825	0.83	+0.5
5,172,389	+		TX73_023825	0.84	+0.8
5,172,389	+		TX73_023825	0.84	+0.5
5,172,389	+		TX73_023825	0.84	-0.3
5,172,389	+		TX73_023825	0.84	-1.2
5,172,389	+		TX73_023825	0.84	+0.2
5,172,389	+		TX73_023825	0.84	+0.0
5,172,389	+		TX73_023825	0.84	+0.4
5,172,397	-		TX73_023825	0.84	+0.7
5,172,397	-		TX73_023825	0.84	+1.0
5,172,397	-		TX73_023825	0.84	+0.5
5,172,397	-		TX73_023825	0.84	+1.4
5,172,397	-		TX73_023825	0.84	-0.2
5,172,397	-		TX73_023825	0.84	+1.5
5,172,397	-		TX73_023825	0.84	+0.1
5,172,397	-		TX73_023825	0.84	+0.7
5,172,402	-		TX73_023825	0.84	+0.7
5,172,402	-		TX73_023825	0.84	+1.8
5,172,408	+		TX73_023825	0.85	+0.1
5,172,414	-		TX73_023825	0.85	+0.9
5,172,416	-		TX73_023825	0.85	-0.7
5,172,419	+		TX73_023825	0.85	+0.8
5,172,427	-		TX73_023825	0.86	+0.4
5,172,428	-		TX73_023825	0.86	-0.6
5,172,473	+		TX73_023825	0.89	+0.8
5,172,478	-		TX73_023825	0.89	+0.2
5,172,478	-		TX73_023825	0.89	+0.3
5,172,480	+		TX73_023825	0.89	-0.2
5,172,484	+		TX73_023825	0.90	+0.3
5,172,489	+				+0.4
5,172,489	+				+0.4
5,172,489	+				+0.6
5,172,489	+				+0.7
5,172,489	+				+0.1
5,172,492	-				+0.2
5,172,492	-				-1.6
5,172,497	-				+0.5
5,172,499	+				+0.9
5,172,499	+				+0.4
5,172,507	-				+0.3
5,172,517	+				-0.8
5,172,517	+				+0.1
5,172,518	-				-0.1
5,172,533	-				-0.2
5,172,535	-				-0.1
5,172,543	+				-0.2
5,172,551	-				+1.0
5,172,562	-				+0.1
5,172,641	+				+0.6
5,172,722	+		TX73_023830	0.17	-0.2
5,172,778	-		TX73_023830	0.33	-0.1
5,172,779	+		TX73_023830	0.33	+1.0
5,172,787	-		TX73_023830	0.35	+0.3
5,172,795	-		TX73_023830	0.37	+0.6
5,172,800	-		TX73_023830	0.39	+0.5
5,172,807	+		TX73_023830	0.41	-1.4
5,172,816	-		TX73_023830	0.43	+0.5
5,172,909	-		TX73_023830	0.69	+0.2
5,172,929	+		TX73_023830	0.74	-0.9
5,172,954	+		TX73_023830	0.81	+0.3
5,172,954	+		TX73_023830	0.81	-1.2
5,172,964	+		TX73_023830	0.84	+0.4
5,172,974	-		TX73_023830	0.86	+0.2
5,172,985	-		TX73_023830	0.89	+0.5
5,172,987	+				-0.5
5,173,008	+				-0.5
5,173,050	-				-0.5
5,173,053	+				+0.1
5,173,077	-				+0.8
5,173,096	+				+0.2
5,173,104	-				-0.8
5,173,133	-				+0.1
5,173,151	+				-2.7
5,173,201	+				+0.3
5,173,208	-				+1.3
5,173,243	-				-0.2
5,173,255	+				+0.1
5,173,373	-				+0.0
5,173,375	+				+0.3
5,173,390	+				-0.2
5,173,407	-				-1.8
5,173,451	+		TX73_023835	0.13	-2.1
5,173,459	-		TX73_023835	0.13	+1.1
5,173,464	-		TX73_023835	0.14	-0.4
5,173,477	-		TX73_023835	0.15	-0.6
5,173,477	-		TX73_023835	0.15	+1.2
5,173,484	+		TX73_023835	0.15	-1.6
5,173,491	+		TX73_023835	0.16	-0.8
5,173,512	-		TX73_023835	0.17	-0.1
5,173,537	-		TX73_023835	0.19	-2.5
5,173,537	-		TX73_023835	0.19	-0.5
5,173,584	-		TX73_023835	0.23	-1.2
5,173,681	+		TX73_023835	0.30	+0.2
5,173,767	+		TX73_023835	0.36	-1.8
5,173,772	-		TX73_023835	0.36	+0.5
5,173,811	+		TX73_023835	0.39	-0.7
5,173,859	+		TX73_023835	0.43	-2.9
5,173,886	+		TX73_023835	0.45	+0.2
5,173,946	+		TX73_023835	0.49	-1.1
5,173,966	+		TX73_023835	0.51	-2.1
5,173,968	+		TX73_023835	0.51	-0.2
5,173,968	+		TX73_023835	0.51	-2.1
5,173,997	+		TX73_023835	0.53	-1.9
5,174,005	-		TX73_023835	0.54	-1.4
5,174,007	+		TX73_023835	0.54	-1.1
5,174,061	+		TX73_023835	0.58	-1.0
5,174,140	-		TX73_023835	0.64	+0.3
5,174,140	-		TX73_023835	0.64	-0.8
5,174,155	-		TX73_023835	0.65	-2.1
5,174,157	+		TX73_023835	0.65	-1.6
5,174,163	-		TX73_023835	0.65	+0.8
5,174,167	+		TX73_023835	0.65	+1.1
5,174,175	-		TX73_023835	0.66	+0.8
5,174,211	-		TX73_023835	0.69	+0.5
5,174,260	+		TX73_023835	0.72	+0.7
5,174,311	+		TX73_023835	0.76	+1.8
5,174,314	+		TX73_023835	0.76	-1.9
5,174,319	-		TX73_023835	0.77	-1.4
5,174,405	-		TX73_023835	0.83	-0.2
5,174,435	+		TX73_023835	0.85	-0.2
5,174,435	+		TX73_023835	0.85	-2.2
5,174,435	+		TX73_023835	0.85	-0.1
5,174,435	+		TX73_023835	0.85	+1.7
5,174,435	+		TX73_023835	0.85	-0.9
5,174,435	+		TX73_023835	0.85	-3.1
5,174,435	+		TX73_023835	0.85	-1.2
5,174,435	+		TX73_023835	0.85	+0.7
5,174,435	+		TX73_023835	0.85	-2.8
5,174,443	-		TX73_023835	0.86	-0.7
5,174,443	-		TX73_023835	0.86	+3.2
5,174,458	-		TX73_023835	0.87	-0.3
5,174,493	-		TX73_023835	0.89	+0.4
5,174,616	-				-0.6
5,174,702	+				-2.2
5,174,702	+				+0.5
5,174,710	-				-0.7
5,174,724	+				-0.6
5,174,781	-				-0.8
5,174,781	-				+0.8
5,174,901	+		TX73_023840	0.20	+0.3
5,174,967	+		TX73_023840	0.26	-1.8
5,175,013	+		TX73_023840	0.31	-0.4
5,175,036	-		TX73_023840	0.33	+0.2
5,175,061	+		TX73_023840	0.36	+0.2
5,175,061	+		TX73_023840	0.36	-0.0
5,175,083	+		TX73_023840	0.38	-0.1
5,175,091	-		TX73_023840	0.39	-0.1
5,175,122	+		TX73_023840	0.42	-0.1
5,175,151	+		TX73_023840	0.45	+0.2
5,175,185	+		TX73_023840	0.48	+1.2
5,175,185	+		TX73_023840	0.48	+0.7
5,175,188	-		TX73_023840	0.48	+0.5
5,175,193	-		TX73_023840	0.49	-0.5
5,175,193	-		TX73_023840	0.49	-1.0
5,175,193	-		TX73_023840	0.49	+0.4
5,175,193	-		TX73_023840	0.49	-0.5
5,175,194	+		TX73_023840	0.49	+0.7
5,175,220	+		TX73_023840	0.51	+0.1
5,175,221	-		TX73_023840	0.52	+0.6
5,175,222	+		TX73_023840	0.52	+0.4
5,175,223	-		TX73_023840	0.52	-1.9
5,175,230	-		TX73_023840	0.52	+1.1
5,175,246	-		TX73_023840	0.54	+0.3
5,175,263	+		TX73_023840	0.56	+1.0
5,175,268	+		TX73_023840	0.56	+0.7
5,175,361	-		TX73_023840	0.66	+0.2
5,175,363	+		TX73_023840	0.66	-0.4
5,175,371	-		TX73_023840	0.67	+0.5
5,175,371	-		TX73_023840	0.67	-0.5
5,175,422	+		TX73_023840	0.72	-0.8
5,175,472	-		TX73_023840	0.77	+0.1
5,175,477	+		TX73_023840	0.77	+0.2
5,175,482	+		TX73_023840	0.78	+0.0
5,175,490	+		TX73_023840	0.78	-0.5
5,175,558	+		TX73_023840	0.85	+0.5
5,175,590	+		TX73_023840	0.88	+0.4
5,175,600	+		TX73_023840	0.89	+0.0
5,175,618	+				+0.2
5,175,627	+				-1.0
5,175,631	-				+0.3