Experiment: PM with succinate and Sodium Formate anaerobic with light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003210 and TX73_003215 are separated by 149 nucleotides TX73_003215 and TX73_003220 are separated by 78 nucleotides
TX73_003210: TX73_003210 - DNA recombination protein RmuC, at 687,497 to 688,699
_003210
TX73_003215: TX73_003215 - peptide deformylase, at 688,849 to 689,376
_003215
TX73_003220: TX73_003220 - methionyl-tRNA formyltransferase, at 689,455 to 690,387
_003220
Position (kb) 688
689
690 Strain fitness (log2 ratio) -2
-1
0
1 at 687.859 kb on + strand, within TX73_003210 at 687.863 kb on - strand, within TX73_003210 at 687.868 kb on - strand, within TX73_003210 at 687.878 kb on - strand, within TX73_003210 at 687.902 kb on + strand, within TX73_003210 at 687.935 kb on + strand, within TX73_003210 at 687.953 kb on - strand, within TX73_003210 at 687.962 kb on + strand, within TX73_003210 at 687.962 kb on + strand, within TX73_003210 at 687.962 kb on + strand, within TX73_003210 at 687.962 kb on + strand, within TX73_003210 at 687.962 kb on + strand, within TX73_003210 at 687.970 kb on - strand, within TX73_003210 at 687.970 kb on - strand, within TX73_003210 at 687.970 kb on - strand, within TX73_003210 at 687.970 kb on - strand, within TX73_003210 at 687.980 kb on + strand, within TX73_003210 at 687.987 kb on - strand, within TX73_003210 at 688.008 kb on + strand, within TX73_003210 at 688.021 kb on + strand, within TX73_003210 at 688.026 kb on - strand, within TX73_003210 at 688.029 kb on - strand, within TX73_003210 at 688.045 kb on - strand, within TX73_003210 at 688.071 kb on + strand, within TX73_003210 at 688.079 kb on - strand, within TX73_003210 at 688.152 kb on - strand, within TX73_003210 at 688.179 kb on + strand, within TX73_003210 at 688.179 kb on + strand, within TX73_003210 at 688.179 kb on + strand, within TX73_003210 at 688.179 kb on + strand, within TX73_003210 at 688.189 kb on - strand, within TX73_003210 at 688.208 kb on - strand, within TX73_003210 at 688.217 kb on - strand, within TX73_003210 at 688.232 kb on - strand, within TX73_003210 at 688.233 kb on + strand, within TX73_003210 at 688.233 kb on + strand, within TX73_003210 at 688.241 kb on - strand, within TX73_003210 at 688.272 kb on - strand, within TX73_003210 at 688.290 kb on + strand, within TX73_003210 at 688.290 kb on + strand, within TX73_003210 at 688.309 kb on + strand, within TX73_003210 at 688.327 kb on - strand, within TX73_003210 at 688.330 kb on - strand, within TX73_003210 at 688.341 kb on + strand, within TX73_003210 at 688.344 kb on - strand, within TX73_003210 at 688.360 kb on - strand, within TX73_003210 at 688.369 kb on + strand, within TX73_003210 at 688.380 kb on + strand, within TX73_003210 at 688.381 kb on - strand, within TX73_003210 at 688.382 kb on + strand, within TX73_003210 at 688.382 kb on + strand, within TX73_003210 at 688.418 kb on + strand, within TX73_003210 at 688.420 kb on + strand, within TX73_003210 at 688.420 kb on + strand, within TX73_003210 at 688.436 kb on - strand, within TX73_003210 at 688.438 kb on - strand, within TX73_003210 at 688.494 kb on + strand, within TX73_003210 at 688.517 kb on + strand, within TX73_003210 at 688.526 kb on - strand, within TX73_003210 at 688.600 kb on - strand at 688.629 kb on - strand at 688.656 kb on + strand at 688.689 kb on + strand at 688.708 kb on + strand at 688.708 kb on + strand at 688.716 kb on - strand at 688.716 kb on - strand at 688.716 kb on - strand at 688.725 kb on + strand at 688.763 kb on + strand at 688.763 kb on + strand at 688.764 kb on - strand at 688.764 kb on - strand at 688.771 kb on - strand at 688.806 kb on + strand at 688.814 kb on - strand at 688.832 kb on - strand at 688.834 kb on + strand at 688.855 kb on - strand at 688.855 kb on - strand at 688.865 kb on - strand at 689.297 kb on - strand, within TX73_003215 at 689.304 kb on + strand, within TX73_003215 at 689.350 kb on + strand at 689.365 kb on + strand at 689.413 kb on - strand at 689.420 kb on - strand at 689.422 kb on + strand at 689.425 kb on - strand at 689.427 kb on + strand at 689.427 kb on + strand at 689.427 kb on + strand at 689.427 kb on + strand at 689.427 kb on + strand at 689.427 kb on + strand at 689.435 kb on - strand at 689.437 kb on + strand at 689.437 kb on + strand at 689.453 kb on - strand at 689.454 kb on - strand at 690.369 kb on + strand at 690.369 kb on + strand at 690.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate anaerobic with light remove 687,859 + TX73_003210 0.30 +0.6 687,863 - TX73_003210 0.30 +0.3 687,868 - TX73_003210 0.31 -0.0 687,878 - TX73_003210 0.32 -0.5 687,902 + TX73_003210 0.34 -0.2 687,935 + TX73_003210 0.36 -0.2 687,953 - TX73_003210 0.38 -0.5 687,962 + TX73_003210 0.39 +1.1 687,962 + TX73_003210 0.39 +0.1 687,962 + TX73_003210 0.39 -0.1 687,962 + TX73_003210 0.39 +0.5 687,962 + TX73_003210 0.39 -0.1 687,970 - TX73_003210 0.39 +0.3 687,970 - TX73_003210 0.39 +0.2 687,970 - TX73_003210 0.39 +0.2 687,970 - TX73_003210 0.39 -1.8 687,980 + TX73_003210 0.40 -0.1 687,987 - TX73_003210 0.41 -1.1 688,008 + TX73_003210 0.42 +0.5 688,021 + TX73_003210 0.44 -0.3 688,026 - TX73_003210 0.44 -1.5 688,029 - TX73_003210 0.44 +0.5 688,045 - TX73_003210 0.46 -1.9 688,071 + TX73_003210 0.48 -0.1 688,079 - TX73_003210 0.48 -0.7 688,152 - TX73_003210 0.54 +0.0 688,179 + TX73_003210 0.57 +0.2 688,179 + TX73_003210 0.57 +0.8 688,179 + TX73_003210 0.57 +1.1 688,179 + TX73_003210 0.57 +0.0 688,189 - TX73_003210 0.58 -0.3 688,208 - TX73_003210 0.59 +0.4 688,217 - TX73_003210 0.60 +0.2 688,232 - TX73_003210 0.61 -1.6 688,233 + TX73_003210 0.61 +0.2 688,233 + TX73_003210 0.61 -1.2 688,241 - TX73_003210 0.62 +0.3 688,272 - TX73_003210 0.64 +0.5 688,290 + TX73_003210 0.66 +0.8 688,290 + TX73_003210 0.66 -1.2 688,309 + TX73_003210 0.67 +0.3 688,327 - TX73_003210 0.69 -0.6 688,330 - TX73_003210 0.69 -0.0 688,341 + TX73_003210 0.70 -0.0 688,344 - TX73_003210 0.70 -0.4 688,360 - TX73_003210 0.72 +0.4 688,369 + TX73_003210 0.72 -0.1 688,380 + TX73_003210 0.73 +1.4 688,381 - TX73_003210 0.73 +0.0 688,382 + TX73_003210 0.74 -0.0 688,382 + TX73_003210 0.74 -0.0 688,418 + TX73_003210 0.77 -0.0 688,420 + TX73_003210 0.77 -0.4 688,420 + TX73_003210 0.77 -0.3 688,436 - TX73_003210 0.78 +0.6 688,438 - TX73_003210 0.78 -0.3 688,494 + TX73_003210 0.83 +0.6 688,517 + TX73_003210 0.85 -1.6 688,526 - TX73_003210 0.86 -0.7 688,600 - +0.9 688,629 - +0.3 688,656 + -0.3 688,689 + +0.3 688,708 + -1.9 688,708 + +0.1 688,716 - +0.3 688,716 - +0.8 688,716 - +0.1 688,725 + +0.7 688,763 + +0.4 688,763 + -1.2 688,764 - +0.4 688,764 - +0.2 688,771 - -0.5 688,806 + -0.3 688,814 - +0.6 688,832 - -2.3 688,834 + -0.4 688,855 - +0.1 688,855 - +0.4 688,865 - +0.7 689,297 - TX73_003215 0.85 +1.1 689,304 + TX73_003215 0.86 +0.4 689,350 + +0.1 689,365 + -0.0 689,413 - -1.2 689,420 - +0.6 689,422 + -0.2 689,425 - +0.5 689,427 + +1.7 689,427 + -0.2 689,427 + -1.0 689,427 + -0.7 689,427 + +1.4 689,427 + +0.7 689,435 - -2.4 689,437 + +0.1 689,437 + +0.2 689,453 - +0.2 689,454 - -1.5 690,369 + +0.9 690,369 + +0.8 690,369 + -0.8
Or see this region's nucleotide sequence