Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019400

Experiment: PM with succinate and Sodium Formate anaerobic with light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PM with succinate and Sodium Formate anaerobic with light
4,233,947	+				-0.4
4,233,978	-				+0.2
4,233,982	+				+1.1
4,233,982	-				+0.6
4,234,003	+				-0.4
4,234,011	-				-0.5
4,234,011	-				+0.7
4,234,024	-				+0.2
4,234,024	-				+0.4
4,234,024	-				-0.6
4,234,024	-				-0.5
4,234,053	+				+0.8
4,234,054	-				-0.7
4,234,056	+				-0.6
4,234,064	-				+0.3
4,234,110	-				-0.2
4,234,125	+				-0.7
4,234,133	-				-1.0
4,234,135	+				+0.2
4,234,143	-				-0.2
4,234,206	+				+0.1
4,234,206	+				+0.7
4,234,207	+				-0.1
4,234,214	-				-0.2
4,234,223	-				+0.6
4,234,254	-				-0.3
4,234,279	-				+0.0
4,234,284	+				-0.7
4,234,285	+				-1.1
4,234,293	-				-0.4
4,234,303	+				+0.1
4,234,327	+				+0.2
4,234,347	-				+1.4
4,234,364	+				+0.0
4,234,383	+				-0.6
4,234,383	+				-0.5
4,234,383	+				-0.6
4,234,391	-				-0.2
4,234,442	+		TX73_019395	0.19	-0.1
4,234,461	+		TX73_019395	0.23	+0.1
4,234,461	+		TX73_019395	0.23	-0.9
4,234,461	+		TX73_019395	0.23	+0.3
4,234,469	-		TX73_019395	0.25	+0.4
4,234,469	-		TX73_019395	0.25	-0.8
4,234,469	-		TX73_019395	0.25	-0.2
4,234,469	-		TX73_019395	0.25	-0.5
4,234,473	+		TX73_019395	0.25	-0.4
4,234,484	-		TX73_019395	0.28	-0.4
4,234,565	+		TX73_019395	0.44	-0.2
4,234,566	+		TX73_019395	0.44	-0.6
4,234,578	-		TX73_019395	0.46	-0.4
4,234,677	+		TX73_019395	0.66	-0.4
4,234,689	+		TX73_019395	0.68	-0.3
4,234,690	+		TX73_019395	0.68	-0.5
4,234,695	+		TX73_019395	0.69	-0.1
4,234,695	+		TX73_019395	0.69	-0.1
4,234,695	+		TX73_019395	0.69	+0.3
4,234,695	-		TX73_019395	0.69	+0.4
4,234,698	-		TX73_019395	0.70	-0.7
4,234,698	-		TX73_019395	0.70	+0.2
4,234,701	+		TX73_019395	0.71	-0.5
4,234,735	+		TX73_019395	0.77	+1.2
4,234,768	+		TX73_019395	0.84	-0.0
4,234,827	+				+0.7
4,234,842	+				-0.8
4,234,951	-				+0.6
4,234,994	+				-0.6
4,235,014	+				-1.2
4,235,020	+				+1.2
4,235,029	+				+0.8
4,235,029	+				-0.2
4,235,037	-				-0.3
4,235,039	-				-0.4
4,235,061	+				+0.3
4,235,066	+				+0.8
4,235,105	-				-1.2
4,235,115	-				-0.1
4,235,126	+				-0.9
4,235,126	+				+0.3
4,235,126	+				-0.1
4,235,129	-				+0.3
4,235,134	-				-0.4
4,235,150	-				-0.1
4,235,170	-				+0.1
4,235,170	-				-0.5
4,235,170	-				+0.4
4,235,178	-				-0.2
4,235,181	-		TX73_019400	0.10	+0.6
4,235,211	-		TX73_019400	0.11	+1.1
4,235,240	+		TX73_019400	0.13	-0.2
4,235,248	-		TX73_019400	0.13	+0.3
4,235,257	+		TX73_019400	0.13	-2.1
4,235,257	+		TX73_019400	0.13	-0.8
4,235,257	+		TX73_019400	0.13	-0.2
4,235,257	+		TX73_019400	0.13	-0.2
4,235,257	+		TX73_019400	0.13	-0.6
4,235,262	+		TX73_019400	0.13	+1.5
4,235,265	-		TX73_019400	0.14	-1.1
4,235,265	-		TX73_019400	0.14	-0.1
4,235,275	-		TX73_019400	0.14	-0.7
4,235,308	-		TX73_019400	0.15	-0.7
4,235,318	-		TX73_019400	0.16	-0.3
4,235,327	-		TX73_019400	0.16	+0.1
4,235,334	+		TX73_019400	0.16	-0.4
4,235,336	+		TX73_019400	0.17	-0.5
4,235,345	-		TX73_019400	0.17	-1.5
4,235,347	-		TX73_019400	0.17	-0.4
4,235,363	-		TX73_019400	0.18	-1.7
4,235,381	+		TX73_019400	0.18	+0.4
4,235,388	+		TX73_019400	0.19	+0.7
4,235,431	+		TX73_019400	0.21	-0.2
4,235,453	-		TX73_019400	0.22	-0.7
4,235,470	-		TX73_019400	0.22	-1.6
4,235,523	+		TX73_019400	0.24	-0.5
4,235,530	-		TX73_019400	0.25	-0.4
4,235,530	-		TX73_019400	0.25	-1.2
4,235,554	-		TX73_019400	0.26	-0.0
4,235,594	+		TX73_019400	0.27	-1.1
4,235,612	+		TX73_019400	0.28	-0.5
4,235,612	+		TX73_019400	0.28	-1.0
4,235,620	-		TX73_019400	0.29	-0.6
4,235,620	-		TX73_019400	0.29	-0.7
4,235,628	+		TX73_019400	0.29	-0.9
4,235,628	-		TX73_019400	0.29	+1.5
4,235,628	-		TX73_019400	0.29	+0.0
4,235,662	+		TX73_019400	0.30	-1.5
4,235,669	-		TX73_019400	0.31	-2.2
4,235,704	+		TX73_019400	0.32	-0.4
4,235,714	-		TX73_019400	0.33	-0.4
4,235,716	-		TX73_019400	0.33	-1.3
4,235,754	+		TX73_019400	0.34	-0.2
4,235,815	+		TX73_019400	0.37	-0.1
4,235,828	-		TX73_019400	0.37	+0.2
4,235,834	-		TX73_019400	0.38	+0.3
4,235,875	+		TX73_019400	0.39	+0.2
4,235,891	-		TX73_019400	0.40	+0.1
4,235,920	-		TX73_019400	0.41	+0.2
4,235,973	-		TX73_019400	0.43	+1.3
4,235,973	-		TX73_019400	0.43	-0.0
4,235,976	+		TX73_019400	0.44	-0.4
4,235,984	-		TX73_019400	0.44	-0.8
4,235,984	-		TX73_019400	0.44	-0.4
4,235,984	-		TX73_019400	0.44	-0.3
4,236,018	+		TX73_019400	0.45	-0.1
4,236,019	+		TX73_019400	0.45	-0.8
4,236,026	-		TX73_019400	0.46	-0.8
4,236,031	-		TX73_019400	0.46	-0.8
4,236,046	+		TX73_019400	0.47	+0.5
4,236,069	+		TX73_019400	0.48	-0.8
4,236,082	+		TX73_019400	0.48	-0.0
4,236,122	+		TX73_019400	0.50	-0.8
4,236,167	+		TX73_019400	0.52	-0.5
4,236,168	-		TX73_019400	0.52	+1.2
4,236,188	-		TX73_019400	0.53	+0.3
4,236,193	-		TX73_019400	0.53	+0.3
4,236,284	+		TX73_019400	0.57	+0.2
4,236,292	-		TX73_019400	0.57	-0.2
4,236,304	-		TX73_019400	0.57	-0.6
4,236,308	+		TX73_019400	0.58	-0.9
4,236,331	+		TX73_019400	0.59	+0.1
4,236,341	-		TX73_019400	0.59	-0.1
4,236,343	-		TX73_019400	0.59	-1.1
4,236,344	-		TX73_019400	0.59	-0.5
4,236,370	-		TX73_019400	0.60	+0.4
4,236,383	-		TX73_019400	0.61	-0.1
4,236,383	-		TX73_019400	0.61	+0.1
4,236,401	+		TX73_019400	0.62	-1.0
4,236,431	-		TX73_019400	0.63	+0.3
4,236,437	-		TX73_019400	0.63	-0.2
4,236,470	-		TX73_019400	0.64	+0.3
4,236,472	-		TX73_019400	0.65	+0.7
4,236,474	+		TX73_019400	0.65	-1.0
4,236,487	-		TX73_019400	0.65	+1.2
4,236,550	-		TX73_019400	0.68	+0.1
4,236,592	-		TX73_019400	0.70	-0.2
4,236,592	-		TX73_019400	0.70	-1.5
4,236,593	-		TX73_019400	0.70	-2.2
4,236,659	+		TX73_019400	0.72	+0.2
4,236,672	-		TX73_019400	0.73	-0.9
4,236,672	-		TX73_019400	0.73	-0.6
4,236,682	-		TX73_019400	0.73	-0.2
4,236,711	+		TX73_019400	0.75	+0.3
4,236,728	+		TX73_019400	0.75	-0.0
4,236,753	-		TX73_019400	0.76	-2.9
4,236,753	-		TX73_019400	0.76	-0.6
4,236,776	-		TX73_019400	0.77	-0.0
4,236,780	-		TX73_019400	0.78	+0.9
4,236,829	-		TX73_019400	0.80	+0.0
4,236,845	+		TX73_019400	0.80	-0.3
4,236,876	-		TX73_019400	0.82	-0.4
4,236,893	+		TX73_019400	0.82	-0.4
4,236,894	+		TX73_019400	0.82	-0.3
4,236,929	-		TX73_019400	0.84	-0.5
4,236,929	-		TX73_019400	0.84	-0.3
4,236,929	-		TX73_019400	0.84	-0.1
4,236,934	+		TX73_019400	0.84	-0.5
4,236,942	-		TX73_019400	0.84	+0.6
4,236,943	+		TX73_019400	0.84	-0.3
4,236,959	-		TX73_019400	0.85	-0.8
4,236,991	+		TX73_019400	0.86	-1.1
4,236,992	+		TX73_019400	0.86	+0.0
4,237,031	-		TX73_019400	0.88	+0.1
4,237,077	+				+0.3
4,237,077	+				-0.1
4,237,086	+				+0.4
4,237,086	+				-0.1
4,237,104	-				+0.2
4,237,109	-				-0.2
4,237,121	+				-0.7
4,237,137	+				+0.6
4,237,145	-				-0.1
4,237,160	-				+0.4
4,237,172	+				-0.2
4,237,199	-				-0.2
4,237,227	-				-0.4
4,237,233	-				+0.7
4,237,254	-				+0.1
4,237,298	-				+0.2
4,237,308	+				+0.6
4,237,334	+				-0.4
4,237,362	+				+0.5
4,237,370	-				+0.7
4,237,403	-				+0.0
4,237,430	+				+0.5
4,237,430	+				+1.2
4,237,438	-				-0.2
4,237,510	+				-0.6
4,237,518	+				+0.3
4,237,540	+				-0.3
4,237,561	+				-0.4
4,237,561	+				-0.2
4,237,567	+				+0.5
4,237,683	+		TX73_019405	0.21	-0.6
4,237,683	+		TX73_019405	0.21	-0.2
4,237,691	-		TX73_019405	0.22	+0.7
4,237,701	-		TX73_019405	0.24	+0.9
4,237,720	-		TX73_019405	0.26	-0.7
4,237,756	-		TX73_019405	0.31	+0.3
4,237,768	+		TX73_019405	0.32	-1.0
4,237,795	-		TX73_019405	0.36	-0.6
4,237,797	+		TX73_019405	0.36	+0.2
4,237,815	+		TX73_019405	0.38	-0.0
4,237,845	-		TX73_019405	0.42	+0.5
4,237,859	+		TX73_019405	0.44	+0.5
4,237,867	-		TX73_019405	0.45	-0.4
4,237,877	-		TX73_019405	0.46	-1.1
4,237,882	+		TX73_019405	0.47	+0.2
4,237,892	+		TX73_019405	0.48	-0.7
4,237,897	+		TX73_019405	0.49	+0.2
4,237,897	+		TX73_019405	0.49	-0.3
4,237,972	+		TX73_019405	0.59	-0.4
4,237,980	-		TX73_019405	0.60	+0.6
4,237,980	-		TX73_019405	0.60	-0.3
4,237,982	+		TX73_019405	0.60	+0.0
4,237,982	+		TX73_019405	0.60	+0.6
4,237,982	+		TX73_019405	0.60	+0.6
4,237,982	+		TX73_019405	0.60	-0.3
4,237,982	+		TX73_019405	0.60	+0.1
4,237,982	+		TX73_019405	0.60	-0.1
4,237,982	+		TX73_019405	0.60	-0.9
4,237,990	-		TX73_019405	0.61	-0.5
4,237,990	-		TX73_019405	0.61	-0.9
4,237,990	-		TX73_019405	0.61	+0.2
4,237,990	-		TX73_019405	0.61	+0.1
4,237,990	-		TX73_019405	0.61	+0.0
4,237,990	-		TX73_019405	0.61	+0.3
4,237,990	-		TX73_019405	0.61	-0.4
4,237,990	-		TX73_019405	0.61	-0.4
4,237,990	-		TX73_019405	0.61	+0.1
4,238,032	+		TX73_019405	0.67	+0.3
4,238,036	-		TX73_019405	0.67	-0.4
4,238,071	-		TX73_019405	0.72	-0.6
4,238,095	+		TX73_019405	0.75	-0.9
4,238,140	-		TX73_019405	0.81	+0.3
4,238,153	-		TX73_019405	0.82	+0.1
4,238,157	+		TX73_019405	0.83	+0.1
4,238,197	+		TX73_019405	0.88	+0.5
4,238,213	+				+0.3
4,238,213	+				-0.4
4,238,300	-				-0.6