Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001950

Experiment: PM with succinate and Sodium Formate anaerobic with light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001945 and TX73_001950 are separated by 73 nucleotidesTX73_001950 and TX73_001955 are separated by 229 nucleotides TX73_001945: TX73_001945 - zinc-dependent alcohol dehydrogenase family protein, at 408,105 to 409,088 _001945 TX73_001950: TX73_001950 - ChaB family protein, at 409,162 to 409,383 _001950 TX73_001955: TX73_001955 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 409,613 to 410,335 _001955 Position (kb) 409 410Strain fitness (log2 ratio) -2 -1 0 1at 408.210 kb on + strand, within TX73_001945at 408.213 kb on + strand, within TX73_001945at 408.283 kb on + strand, within TX73_001945at 408.286 kb on + strand, within TX73_001945at 408.294 kb on - strand, within TX73_001945at 408.317 kb on - strand, within TX73_001945at 408.344 kb on - strand, within TX73_001945at 408.350 kb on - strand, within TX73_001945at 408.363 kb on - strand, within TX73_001945at 408.390 kb on + strand, within TX73_001945at 408.416 kb on - strand, within TX73_001945at 408.436 kb on - strand, within TX73_001945at 408.443 kb on + strand, within TX73_001945at 408.452 kb on + strand, within TX73_001945at 408.456 kb on + strand, within TX73_001945at 408.456 kb on + strand, within TX73_001945at 408.456 kb on + strand, within TX73_001945at 408.456 kb on + strand, within TX73_001945at 408.456 kb on + strand, within TX73_001945at 408.456 kb on + strand, within TX73_001945at 408.456 kb on + strand, within TX73_001945at 408.464 kb on - strand, within TX73_001945at 408.464 kb on - strand, within TX73_001945at 408.464 kb on - strand, within TX73_001945at 408.464 kb on - strand, within TX73_001945at 408.469 kb on - strand, within TX73_001945at 408.486 kb on + strand, within TX73_001945at 408.486 kb on + strand, within TX73_001945at 408.486 kb on + strand, within TX73_001945at 408.486 kb on + strand, within TX73_001945at 408.486 kb on + strand, within TX73_001945at 408.486 kb on + strand, within TX73_001945at 408.494 kb on - strand, within TX73_001945at 408.494 kb on - strand, within TX73_001945at 408.494 kb on - strand, within TX73_001945at 408.494 kb on - strand, within TX73_001945at 408.513 kb on + strand, within TX73_001945at 408.513 kb on + strand, within TX73_001945at 408.519 kb on + strand, within TX73_001945at 408.519 kb on + strand, within TX73_001945at 408.519 kb on + strand, within TX73_001945at 408.519 kb on + strand, within TX73_001945at 408.519 kb on + strand, within TX73_001945at 408.519 kb on + strand, within TX73_001945at 408.521 kb on - strand, within TX73_001945at 408.527 kb on - strand, within TX73_001945at 408.527 kb on - strand, within TX73_001945at 408.527 kb on - strand, within TX73_001945at 408.528 kb on - strand, within TX73_001945at 408.528 kb on - strand, within TX73_001945at 408.533 kb on + strand, within TX73_001945at 408.533 kb on + strand, within TX73_001945at 408.541 kb on - strand, within TX73_001945at 408.541 kb on - strand, within TX73_001945at 408.552 kb on - strand, within TX73_001945at 408.578 kb on - strand, within TX73_001945at 408.641 kb on + strand, within TX73_001945at 408.641 kb on + strand, within TX73_001945at 408.641 kb on + strand, within TX73_001945at 408.641 kb on + strand, within TX73_001945at 408.641 kb on + strand, within TX73_001945at 408.646 kb on + strand, within TX73_001945at 408.646 kb on + strand, within TX73_001945at 408.649 kb on - strand, within TX73_001945at 408.649 kb on - strand, within TX73_001945at 408.649 kb on - strand, within TX73_001945at 408.651 kb on + strand, within TX73_001945at 408.654 kb on - strand, within TX73_001945at 408.654 kb on - strand, within TX73_001945at 408.675 kb on + strand, within TX73_001945at 408.703 kb on - strand, within TX73_001945at 408.733 kb on + strand, within TX73_001945at 408.755 kb on - strand, within TX73_001945at 408.762 kb on - strand, within TX73_001945at 408.802 kb on + strand, within TX73_001945at 408.812 kb on + strand, within TX73_001945at 408.820 kb on - strand, within TX73_001945at 408.855 kb on + strand, within TX73_001945at 408.857 kb on - strand, within TX73_001945at 408.860 kb on + strand, within TX73_001945at 408.860 kb on + strand, within TX73_001945at 408.861 kb on - strand, within TX73_001945at 408.863 kb on - strand, within TX73_001945at 408.872 kb on + strand, within TX73_001945at 408.872 kb on + strand, within TX73_001945at 408.873 kb on - strand, within TX73_001945at 408.880 kb on - strand, within TX73_001945at 408.880 kb on - strand, within TX73_001945at 408.913 kb on - strand, within TX73_001945at 408.920 kb on - strand, within TX73_001945at 408.965 kb on + strand, within TX73_001945at 408.965 kb on + strand, within TX73_001945at 408.968 kb on - strand, within TX73_001945at 408.968 kb on - strand, within TX73_001945at 408.973 kb on - strand, within TX73_001945at 409.007 kb on - strandat 409.007 kb on - strandat 409.023 kb on - strandat 409.108 kb on - strandat 409.118 kb on + strandat 409.126 kb on - strandat 409.126 kb on - strandat 409.130 kb on - strandat 409.130 kb on - strandat 409.130 kb on - strandat 409.145 kb on + strandat 409.150 kb on + strandat 409.153 kb on - strandat 409.160 kb on + strandat 409.168 kb on - strandat 409.186 kb on + strand, within TX73_001950at 409.202 kb on + strand, within TX73_001950at 409.245 kb on - strand, within TX73_001950at 409.249 kb on - strand, within TX73_001950at 409.252 kb on + strand, within TX73_001950at 409.257 kb on + strand, within TX73_001950at 409.257 kb on + strand, within TX73_001950at 409.307 kb on + strand, within TX73_001950at 409.307 kb on + strand, within TX73_001950at 409.312 kb on + strand, within TX73_001950at 409.315 kb on - strand, within TX73_001950at 409.315 kb on - strand, within TX73_001950at 409.320 kb on - strand, within TX73_001950at 409.412 kb on - strandat 409.447 kb on - strandat 409.504 kb on + strandat 409.504 kb on + strandat 409.504 kb on + strandat 409.512 kb on - strandat 409.532 kb on - strandat 409.542 kb on - strandat 409.553 kb on - strandat 409.575 kb on + strandat 409.578 kb on - strandat 409.614 kb on - strandat 409.618 kb on + strandat 409.618 kb on + strandat 409.625 kb on + strandat 409.634 kb on - strandat 409.707 kb on + strand, within TX73_001955at 409.718 kb on - strand, within TX73_001955at 409.738 kb on + strand, within TX73_001955at 409.837 kb on + strand, within TX73_001955at 409.837 kb on + strand, within TX73_001955at 409.837 kb on + strand, within TX73_001955at 409.837 kb on + strand, within TX73_001955at 409.837 kb on + strand, within TX73_001955at 409.837 kb on + strand, within TX73_001955at 409.837 kb on + strand, within TX73_001955at 409.837 kb on + strand, within TX73_001955at 409.837 kb on + strand, within TX73_001955at 409.845 kb on - strand, within TX73_001955at 409.845 kb on - strand, within TX73_001955at 409.845 kb on - strand, within TX73_001955at 409.845 kb on - strand, within TX73_001955at 409.850 kb on - strand, within TX73_001955at 409.865 kb on + strand, within TX73_001955at 409.882 kb on - strand, within TX73_001955at 409.884 kb on + strand, within TX73_001955at 409.884 kb on + strand, within TX73_001955at 409.969 kb on + strand, within TX73_001955at 410.039 kb on + strand, within TX73_001955at 410.052 kb on - strand, within TX73_001955at 410.073 kb on - strand, within TX73_001955at 410.140 kb on + strand, within TX73_001955at 410.140 kb on + strand, within TX73_001955at 410.170 kb on + strand, within TX73_001955at 410.170 kb on + strand, within TX73_001955at 410.174 kb on - strand, within TX73_001955at 410.178 kb on - strand, within TX73_001955at 410.178 kb on - strand, within TX73_001955at 410.178 kb on - strand, within TX73_001955at 410.178 kb on - strand, within TX73_001955at 410.183 kb on - strand, within TX73_001955at 410.189 kb on + strand, within TX73_001955at 410.190 kb on + strand, within TX73_001955at 410.195 kb on + strand, within TX73_001955at 410.198 kb on - strand, within TX73_001955at 410.203 kb on - strand, within TX73_001955at 410.203 kb on - strand, within TX73_001955at 410.208 kb on + strand, within TX73_001955at 410.245 kb on + strand, within TX73_001955at 410.254 kb on + strand, within TX73_001955at 410.255 kb on - strand, within TX73_001955at 410.258 kb on - strand, within TX73_001955at 410.259 kb on + strand, within TX73_001955at 410.285 kb on - strandat 410.295 kb on + strandat 410.303 kb on - strandat 410.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PM with succinate and Sodium Formate anaerobic with light
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408,210 + TX73_001945 0.11 +0.1
408,213 + TX73_001945 0.11 -0.1
408,283 + TX73_001945 0.18 +0.0
408,286 + TX73_001945 0.18 -0.1
408,294 - TX73_001945 0.19 +0.4
408,317 - TX73_001945 0.22 +0.4
408,344 - TX73_001945 0.24 +1.1
408,350 - TX73_001945 0.25 +0.8
408,363 - TX73_001945 0.26 +0.3
408,390 + TX73_001945 0.29 +0.4
408,416 - TX73_001945 0.32 -0.2
408,436 - TX73_001945 0.34 +0.2
408,443 + TX73_001945 0.34 +0.6
408,452 + TX73_001945 0.35 -0.1
408,456 + TX73_001945 0.36 +0.5
408,456 + TX73_001945 0.36 +0.8
408,456 + TX73_001945 0.36 +0.0
408,456 + TX73_001945 0.36 +0.3
408,456 + TX73_001945 0.36 -0.3
408,456 + TX73_001945 0.36 +0.6
408,456 + TX73_001945 0.36 -0.2
408,464 - TX73_001945 0.36 -0.1
408,464 - TX73_001945 0.36 -0.4
408,464 - TX73_001945 0.36 +0.5
408,464 - TX73_001945 0.36 -0.4
408,469 - TX73_001945 0.37 +0.2
408,486 + TX73_001945 0.39 +0.1
408,486 + TX73_001945 0.39 +0.9
408,486 + TX73_001945 0.39 +0.3
408,486 + TX73_001945 0.39 -0.1
408,486 + TX73_001945 0.39 +0.1
408,486 + TX73_001945 0.39 -0.6
408,494 - TX73_001945 0.40 -0.9
408,494 - TX73_001945 0.40 -0.6
408,494 - TX73_001945 0.40 +0.2
408,494 - TX73_001945 0.40 +0.1
408,513 + TX73_001945 0.41 -0.1
408,513 + TX73_001945 0.41 +0.8
408,519 + TX73_001945 0.42 -1.7
408,519 + TX73_001945 0.42 +0.7
408,519 + TX73_001945 0.42 -0.0
408,519 + TX73_001945 0.42 -0.5
408,519 + TX73_001945 0.42 -0.2
408,519 + TX73_001945 0.42 -0.4
408,521 - TX73_001945 0.42 -0.6
408,527 - TX73_001945 0.43 -0.0
408,527 - TX73_001945 0.43 -0.1
408,527 - TX73_001945 0.43 -0.7
408,528 - TX73_001945 0.43 +0.7
408,528 - TX73_001945 0.43 +0.4
408,533 + TX73_001945 0.43 +0.1
408,533 + TX73_001945 0.43 +0.2
408,541 - TX73_001945 0.44 +0.7
408,541 - TX73_001945 0.44 -0.6
408,552 - TX73_001945 0.45 -1.0
408,578 - TX73_001945 0.48 -0.4
408,641 + TX73_001945 0.54 +0.8
408,641 + TX73_001945 0.54 +0.2
408,641 + TX73_001945 0.54 -0.2
408,641 + TX73_001945 0.54 +0.0
408,641 + TX73_001945 0.54 +0.2
408,646 + TX73_001945 0.55 +0.4
408,646 + TX73_001945 0.55 +0.3
408,649 - TX73_001945 0.55 -0.6
408,649 - TX73_001945 0.55 -1.0
408,649 - TX73_001945 0.55 +0.2
408,651 + TX73_001945 0.55 -0.9
408,654 - TX73_001945 0.56 +0.7
408,654 - TX73_001945 0.56 -1.8
408,675 + TX73_001945 0.58 -0.3
408,703 - TX73_001945 0.61 -0.5
408,733 + TX73_001945 0.64 +1.1
408,755 - TX73_001945 0.66 +0.1
408,762 - TX73_001945 0.67 -0.2
408,802 + TX73_001945 0.71 +0.7
408,812 + TX73_001945 0.72 +0.1
408,820 - TX73_001945 0.73 +0.4
408,855 + TX73_001945 0.76 +0.4
408,857 - TX73_001945 0.76 -0.4
408,860 + TX73_001945 0.77 -0.2
408,860 + TX73_001945 0.77 -0.3
408,861 - TX73_001945 0.77 +0.5
408,863 - TX73_001945 0.77 -0.3
408,872 + TX73_001945 0.78 +0.2
408,872 + TX73_001945 0.78 -0.2
408,873 - TX73_001945 0.78 +0.4
408,880 - TX73_001945 0.79 +0.1
408,880 - TX73_001945 0.79 -0.3
408,913 - TX73_001945 0.82 +0.2
408,920 - TX73_001945 0.83 +0.2
408,965 + TX73_001945 0.87 -0.0
408,965 + TX73_001945 0.87 +1.3
408,968 - TX73_001945 0.88 +0.0
408,968 - TX73_001945 0.88 -0.2
408,973 - TX73_001945 0.88 -0.6
409,007 - -2.7
409,007 - -0.4
409,023 - +0.3
409,108 - +0.4
409,118 + -1.1
409,126 - +0.6
409,126 - -0.1
409,130 - +0.0
409,130 - +0.2
409,130 - +0.1
409,145 + -0.1
409,150 + -0.8
409,153 - +0.1
409,160 + -2.0
409,168 - +1.4
409,186 + TX73_001950 0.11 +1.7
409,202 + TX73_001950 0.18 +0.6
409,245 - TX73_001950 0.37 +0.9
409,249 - TX73_001950 0.39 +0.0
409,252 + TX73_001950 0.41 +0.4
409,257 + TX73_001950 0.43 +0.1
409,257 + TX73_001950 0.43 -0.6
409,307 + TX73_001950 0.65 -0.1
409,307 + TX73_001950 0.65 -0.3
409,312 + TX73_001950 0.68 +0.6
409,315 - TX73_001950 0.69 +0.4
409,315 - TX73_001950 0.69 +0.6
409,320 - TX73_001950 0.71 +0.5
409,412 - -0.2
409,447 - +0.3
409,504 + -0.5
409,504 + -0.6
409,504 + +0.2
409,512 - -1.5
409,532 - +0.6
409,542 - +0.6
409,553 - +0.7
409,575 + +0.2
409,578 - +1.1
409,614 - -1.3
409,618 + +0.4
409,618 + +0.4
409,625 + -1.1
409,634 - -0.9
409,707 + TX73_001955 0.13 +0.5
409,718 - TX73_001955 0.15 +0.2
409,738 + TX73_001955 0.17 -1.9
409,837 + TX73_001955 0.31 -0.3
409,837 + TX73_001955 0.31 -0.1
409,837 + TX73_001955 0.31 +0.6
409,837 + TX73_001955 0.31 +0.3
409,837 + TX73_001955 0.31 +0.6
409,837 + TX73_001955 0.31 -0.1
409,837 + TX73_001955 0.31 -0.0
409,837 + TX73_001955 0.31 -0.1
409,837 + TX73_001955 0.31 -1.2
409,845 - TX73_001955 0.32 -0.1
409,845 - TX73_001955 0.32 +1.1
409,845 - TX73_001955 0.32 -0.1
409,845 - TX73_001955 0.32 -0.3
409,850 - TX73_001955 0.33 -0.1
409,865 + TX73_001955 0.35 -0.1
409,882 - TX73_001955 0.37 -0.2
409,884 + TX73_001955 0.37 +1.1
409,884 + TX73_001955 0.37 +0.3
409,969 + TX73_001955 0.49 -0.3
410,039 + TX73_001955 0.59 +0.1
410,052 - TX73_001955 0.61 +0.5
410,073 - TX73_001955 0.64 +0.1
410,140 + TX73_001955 0.73 +0.1
410,140 + TX73_001955 0.73 +1.2
410,170 + TX73_001955 0.77 +0.6
410,170 + TX73_001955 0.77 -0.4
410,174 - TX73_001955 0.78 -0.2
410,178 - TX73_001955 0.78 -0.1
410,178 - TX73_001955 0.78 +0.6
410,178 - TX73_001955 0.78 +0.3
410,178 - TX73_001955 0.78 -0.1
410,183 - TX73_001955 0.79 -0.3
410,189 + TX73_001955 0.80 +0.2
410,190 + TX73_001955 0.80 +0.4
410,195 + TX73_001955 0.80 +0.1
410,198 - TX73_001955 0.81 +0.1
410,203 - TX73_001955 0.82 +0.7
410,203 - TX73_001955 0.82 +0.9
410,208 + TX73_001955 0.82 -0.0
410,245 + TX73_001955 0.87 +0.3
410,254 + TX73_001955 0.89 +0.4
410,255 - TX73_001955 0.89 -0.0
410,258 - TX73_001955 0.89 +0.5
410,259 + TX73_001955 0.89 +0.3
410,285 - +0.6
410,295 + -0.2
410,303 - -0.6
410,358 - -0.2

Or see this region's nucleotide sequence