Experiment: Galactose 1-phosphate dipotassium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04280 and HMPREF1058_RS04275 are separated by 184 nucleotides HMPREF1058_RS04275 and HMPREF1058_RS04270 are separated by 293 nucleotides HMPREF1058_RS04270 and HMPREF1058_RS04265 overlap by 11 nucleotides
HMPREF1058_RS04280: HMPREF1058_RS04280 - family 20 glycosylhydrolase, at 75,584 to 77,905
_RS04280
HMPREF1058_RS04275: HMPREF1058_RS04275 - RNA-binding protein, at 78,090 to 78,335
_RS04275
HMPREF1058_RS04270: HMPREF1058_RS04270 - ferredoxin, at 78,629 to 79,159
_RS04270
HMPREF1058_RS04265: HMPREF1058_RS04265 - Cof-type HAD-IIB family hydrolase, at 79,149 to 79,955
_RS04265
Position (kb) 78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 77.288 kb on + strand, within HMPREF1058_RS04280 at 77.288 kb on + strand, within HMPREF1058_RS04280 at 77.290 kb on + strand, within HMPREF1058_RS04280 at 77.290 kb on + strand, within HMPREF1058_RS04280 at 77.290 kb on + strand, within HMPREF1058_RS04280 at 77.362 kb on + strand, within HMPREF1058_RS04280 at 77.363 kb on - strand, within HMPREF1058_RS04280 at 77.367 kb on + strand, within HMPREF1058_RS04280 at 77.410 kb on + strand, within HMPREF1058_RS04280 at 77.410 kb on + strand, within HMPREF1058_RS04280 at 77.411 kb on - strand, within HMPREF1058_RS04280 at 77.421 kb on + strand, within HMPREF1058_RS04280 at 77.428 kb on + strand, within HMPREF1058_RS04280 at 77.473 kb on + strand, within HMPREF1058_RS04280 at 77.474 kb on - strand, within HMPREF1058_RS04280 at 77.500 kb on + strand, within HMPREF1058_RS04280 at 77.517 kb on + strand, within HMPREF1058_RS04280 at 77.517 kb on + strand, within HMPREF1058_RS04280 at 77.518 kb on - strand, within HMPREF1058_RS04280 at 77.518 kb on - strand, within HMPREF1058_RS04280 at 77.519 kb on + strand, within HMPREF1058_RS04280 at 77.653 kb on + strand, within HMPREF1058_RS04280 at 77.794 kb on - strand at 77.805 kb on - strand at 77.810 kb on - strand at 77.933 kb on - strand at 77.933 kb on - strand at 78.010 kb on + strand at 78.066 kb on - strand at 78.084 kb on - strand at 78.123 kb on - strand, within HMPREF1058_RS04275 at 78.136 kb on + strand, within HMPREF1058_RS04275 at 78.162 kb on - strand, within HMPREF1058_RS04275 at 78.195 kb on + strand, within HMPREF1058_RS04275 at 78.237 kb on - strand, within HMPREF1058_RS04275 at 78.246 kb on + strand, within HMPREF1058_RS04275 at 78.256 kb on - strand, within HMPREF1058_RS04275 at 78.265 kb on + strand, within HMPREF1058_RS04275 at 78.276 kb on + strand, within HMPREF1058_RS04275 at 78.277 kb on - strand, within HMPREF1058_RS04275 at 78.307 kb on + strand, within HMPREF1058_RS04275 at 78.307 kb on + strand, within HMPREF1058_RS04275 at 78.308 kb on - strand, within HMPREF1058_RS04275 at 78.308 kb on - strand, within HMPREF1058_RS04275 at 78.308 kb on - strand, within HMPREF1058_RS04275 at 78.380 kb on - strand at 78.392 kb on - strand at 78.400 kb on - strand at 78.573 kb on - strand at 78.575 kb on - strand at 78.583 kb on + strand at 78.615 kb on + strand at 78.626 kb on + strand at 78.712 kb on + strand, within HMPREF1058_RS04270 at 78.870 kb on + strand, within HMPREF1058_RS04270 at 78.871 kb on - strand, within HMPREF1058_RS04270 at 79.211 kb on - strand at 79.230 kb on + strand, within HMPREF1058_RS04265 at 79.271 kb on - strand, within HMPREF1058_RS04265 at 79.275 kb on + strand, within HMPREF1058_RS04265 at 79.280 kb on + strand, within HMPREF1058_RS04265 at 79.281 kb on - strand, within HMPREF1058_RS04265
Per-strain Table
Position Strand Gene LocusTag Fraction Galactose 1-phosphate dipotassium salt (C) remove 77,288 + HMPREF1058_RS04280 0.73 -2.2 77,288 + HMPREF1058_RS04280 0.73 +1.7 77,290 + HMPREF1058_RS04280 0.73 -0.0 77,290 + HMPREF1058_RS04280 0.73 -0.6 77,290 + HMPREF1058_RS04280 0.73 -0.3 77,362 + HMPREF1058_RS04280 0.77 -0.1 77,363 - HMPREF1058_RS04280 0.77 +0.7 77,367 + HMPREF1058_RS04280 0.77 +0.7 77,410 + HMPREF1058_RS04280 0.79 +0.7 77,410 + HMPREF1058_RS04280 0.79 +0.0 77,411 - HMPREF1058_RS04280 0.79 -0.7 77,421 + HMPREF1058_RS04280 0.79 +0.9 77,428 + HMPREF1058_RS04280 0.79 +0.8 77,473 + HMPREF1058_RS04280 0.81 +0.2 77,474 - HMPREF1058_RS04280 0.81 -0.5 77,500 + HMPREF1058_RS04280 0.83 -0.6 77,517 + HMPREF1058_RS04280 0.83 -0.4 77,517 + HMPREF1058_RS04280 0.83 +0.8 77,518 - HMPREF1058_RS04280 0.83 +0.1 77,518 - HMPREF1058_RS04280 0.83 +0.7 77,519 + HMPREF1058_RS04280 0.83 +0.1 77,653 + HMPREF1058_RS04280 0.89 +0.1 77,794 - +0.3 77,805 - +0.5 77,810 - -0.2 77,933 - -1.0 77,933 - -1.1 78,010 + -0.8 78,066 - +1.1 78,084 - -1.0 78,123 - HMPREF1058_RS04275 0.13 -1.0 78,136 + HMPREF1058_RS04275 0.19 +1.1 78,162 - HMPREF1058_RS04275 0.29 -0.7 78,195 + HMPREF1058_RS04275 0.43 +0.6 78,237 - HMPREF1058_RS04275 0.60 -1.8 78,246 + HMPREF1058_RS04275 0.63 -1.8 78,256 - HMPREF1058_RS04275 0.67 +1.1 78,265 + HMPREF1058_RS04275 0.71 -0.7 78,276 + HMPREF1058_RS04275 0.76 -0.8 78,277 - HMPREF1058_RS04275 0.76 -1.7 78,307 + HMPREF1058_RS04275 0.88 -0.2 78,307 + HMPREF1058_RS04275 0.88 +0.0 78,308 - HMPREF1058_RS04275 0.89 -0.2 78,308 - HMPREF1058_RS04275 0.89 +1.1 78,308 - HMPREF1058_RS04275 0.89 -0.2 78,380 - +0.6 78,392 - -0.7 78,400 - +0.3 78,573 - -0.5 78,575 - -1.7 78,583 + -0.5 78,615 + -3.0 78,626 + +0.4 78,712 + HMPREF1058_RS04270 0.16 -1.0 78,870 + HMPREF1058_RS04270 0.45 +1.3 78,871 - HMPREF1058_RS04270 0.46 +0.6 79,211 - +6.0 79,230 + HMPREF1058_RS04265 0.10 +1.4 79,271 - HMPREF1058_RS04265 0.15 +1.3 79,275 + HMPREF1058_RS04265 0.16 +2.8 79,280 + HMPREF1058_RS04265 0.16 +0.5 79,281 - HMPREF1058_RS04265 0.16 +0.9
Or see this region's nucleotide sequence