Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09745

Experiment: Galactose 1-phosphate dipotassium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS09755 and HMPREF1058_RS09750 are separated by 25 nucleotidesHMPREF1058_RS09750 and HMPREF1058_RS09745 overlap by 8 nucleotidesHMPREF1058_RS09745 and HMPREF1058_RS09740 are separated by 12 nucleotides HMPREF1058_RS09755: HMPREF1058_RS09755 - YfhO family protein, at 802,043 to 804,535 _RS09755 HMPREF1058_RS09750: HMPREF1058_RS09750 - glycosyltransferase, at 804,561 to 805,307 _RS09750 HMPREF1058_RS09745: HMPREF1058_RS09745 - glycosyltransferase, at 805,300 to 806,562 _RS09745 HMPREF1058_RS09740: HMPREF1058_RS09740 - glycosyltransferase family 4 protein, at 806,575 to 807,690 _RS09740 Position (kb) 805 806 807Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 804.592 kb on - strandat 804.601 kb on - strandat 804.698 kb on - strand, within HMPREF1058_RS09750at 804.843 kb on + strand, within HMPREF1058_RS09750at 804.902 kb on + strand, within HMPREF1058_RS09750at 804.904 kb on + strand, within HMPREF1058_RS09750at 804.949 kb on - strand, within HMPREF1058_RS09750at 804.984 kb on + strand, within HMPREF1058_RS09750at 805.001 kb on + strand, within HMPREF1058_RS09750at 805.002 kb on - strand, within HMPREF1058_RS09750at 805.124 kb on + strand, within HMPREF1058_RS09750at 805.125 kb on - strand, within HMPREF1058_RS09750at 805.136 kb on - strand, within HMPREF1058_RS09750at 805.136 kb on - strand, within HMPREF1058_RS09750at 805.187 kb on + strand, within HMPREF1058_RS09750at 805.190 kb on - strand, within HMPREF1058_RS09750at 805.243 kb on - strandat 805.269 kb on - strandat 805.340 kb on + strandat 805.341 kb on - strandat 805.515 kb on + strand, within HMPREF1058_RS09745at 805.572 kb on + strand, within HMPREF1058_RS09745at 805.579 kb on + strand, within HMPREF1058_RS09745at 805.592 kb on - strand, within HMPREF1058_RS09745at 805.610 kb on - strand, within HMPREF1058_RS09745at 805.658 kb on + strand, within HMPREF1058_RS09745at 805.659 kb on - strand, within HMPREF1058_RS09745at 805.674 kb on + strand, within HMPREF1058_RS09745at 805.697 kb on + strand, within HMPREF1058_RS09745at 805.698 kb on - strand, within HMPREF1058_RS09745at 805.791 kb on - strand, within HMPREF1058_RS09745at 805.981 kb on + strand, within HMPREF1058_RS09745at 806.000 kb on - strand, within HMPREF1058_RS09745at 806.050 kb on - strand, within HMPREF1058_RS09745at 806.055 kb on - strand, within HMPREF1058_RS09745at 806.115 kb on - strand, within HMPREF1058_RS09745at 806.163 kb on + strand, within HMPREF1058_RS09745at 806.163 kb on + strand, within HMPREF1058_RS09745at 806.205 kb on + strand, within HMPREF1058_RS09745at 806.233 kb on - strand, within HMPREF1058_RS09745at 806.233 kb on - strand, within HMPREF1058_RS09745at 806.233 kb on - strand, within HMPREF1058_RS09745at 806.233 kb on - strand, within HMPREF1058_RS09745at 806.334 kb on + strand, within HMPREF1058_RS09745at 806.364 kb on + strand, within HMPREF1058_RS09745at 806.414 kb on - strand, within HMPREF1058_RS09745at 806.428 kb on + strand, within HMPREF1058_RS09745at 806.429 kb on - strand, within HMPREF1058_RS09745at 806.429 kb on - strand, within HMPREF1058_RS09745at 806.470 kb on + strandat 806.471 kb on - strandat 806.542 kb on - strandat 806.550 kb on + strandat 806.550 kb on + strandat 806.550 kb on + strandat 806.555 kb on - strandat 806.555 kb on - strandat 806.766 kb on - strand, within HMPREF1058_RS09740at 806.766 kb on - strand, within HMPREF1058_RS09740at 806.783 kb on - strand, within HMPREF1058_RS09740at 806.797 kb on + strand, within HMPREF1058_RS09740at 806.797 kb on + strand, within HMPREF1058_RS09740at 806.883 kb on + strand, within HMPREF1058_RS09740at 806.949 kb on - strand, within HMPREF1058_RS09740at 806.967 kb on + strand, within HMPREF1058_RS09740at 806.970 kb on - strand, within HMPREF1058_RS09740at 807.021 kb on - strand, within HMPREF1058_RS09740at 807.046 kb on + strand, within HMPREF1058_RS09740at 807.047 kb on - strand, within HMPREF1058_RS09740at 807.050 kb on + strand, within HMPREF1058_RS09740at 807.101 kb on - strand, within HMPREF1058_RS09740at 807.101 kb on - strand, within HMPREF1058_RS09740at 807.101 kb on - strand, within HMPREF1058_RS09740at 807.101 kb on - strand, within HMPREF1058_RS09740at 807.129 kb on + strand, within HMPREF1058_RS09740at 807.176 kb on + strand, within HMPREF1058_RS09740at 807.176 kb on + strand, within HMPREF1058_RS09740at 807.177 kb on - strand, within HMPREF1058_RS09740at 807.279 kb on + strand, within HMPREF1058_RS09740at 807.279 kb on + strand, within HMPREF1058_RS09740at 807.296 kb on + strand, within HMPREF1058_RS09740at 807.297 kb on - strand, within HMPREF1058_RS09740at 807.400 kb on + strand, within HMPREF1058_RS09740at 807.401 kb on - strand, within HMPREF1058_RS09740at 807.433 kb on - strand, within HMPREF1058_RS09740at 807.477 kb on + strand, within HMPREF1058_RS09740at 807.485 kb on + strand, within HMPREF1058_RS09740at 807.493 kb on + strand, within HMPREF1058_RS09740at 807.494 kb on - strand, within HMPREF1058_RS09740at 807.525 kb on + strand, within HMPREF1058_RS09740at 807.525 kb on + strand, within HMPREF1058_RS09740

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactose 1-phosphate dipotassium salt (C)
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804,592 - +1.1
804,601 - +1.2
804,698 - HMPREF1058_RS09750 0.18 -0.5
804,843 + HMPREF1058_RS09750 0.38 +2.7
804,902 + HMPREF1058_RS09750 0.46 +1.1
804,904 + HMPREF1058_RS09750 0.46 +0.0
804,949 - HMPREF1058_RS09750 0.52 +1.9
804,984 + HMPREF1058_RS09750 0.57 +2.6
805,001 + HMPREF1058_RS09750 0.59 +2.5
805,002 - HMPREF1058_RS09750 0.59 +2.2
805,124 + HMPREF1058_RS09750 0.75 +2.1
805,125 - HMPREF1058_RS09750 0.76 +4.0
805,136 - HMPREF1058_RS09750 0.77 +1.4
805,136 - HMPREF1058_RS09750 0.77 +1.4
805,187 + HMPREF1058_RS09750 0.84 +3.6
805,190 - HMPREF1058_RS09750 0.84 +3.2
805,243 - +1.9
805,269 - +2.6
805,340 + +2.9
805,341 - +3.2
805,515 + HMPREF1058_RS09745 0.17 +2.5
805,572 + HMPREF1058_RS09745 0.22 +1.7
805,579 + HMPREF1058_RS09745 0.22 +1.2
805,592 - HMPREF1058_RS09745 0.23 +4.8
805,610 - HMPREF1058_RS09745 0.25 +4.5
805,658 + HMPREF1058_RS09745 0.28 +1.9
805,659 - HMPREF1058_RS09745 0.28 +4.3
805,674 + HMPREF1058_RS09745 0.30 +1.3
805,697 + HMPREF1058_RS09745 0.31 +4.0
805,698 - HMPREF1058_RS09745 0.32 +3.6
805,791 - HMPREF1058_RS09745 0.39 +2.4
805,981 + HMPREF1058_RS09745 0.54 +1.4
806,000 - HMPREF1058_RS09745 0.55 +3.9
806,050 - HMPREF1058_RS09745 0.59 +3.8
806,055 - HMPREF1058_RS09745 0.60 +4.7
806,115 - HMPREF1058_RS09745 0.65 +4.9
806,163 + HMPREF1058_RS09745 0.68 +2.4
806,163 + HMPREF1058_RS09745 0.68 +1.6
806,205 + HMPREF1058_RS09745 0.72 +0.3
806,233 - HMPREF1058_RS09745 0.74 +3.8
806,233 - HMPREF1058_RS09745 0.74 +2.3
806,233 - HMPREF1058_RS09745 0.74 +3.5
806,233 - HMPREF1058_RS09745 0.74 +3.6
806,334 + HMPREF1058_RS09745 0.82 +3.6
806,364 + HMPREF1058_RS09745 0.84 +2.1
806,414 - HMPREF1058_RS09745 0.88 +4.3
806,428 + HMPREF1058_RS09745 0.89 +3.1
806,429 - HMPREF1058_RS09745 0.89 +4.2
806,429 - HMPREF1058_RS09745 0.89 +3.2
806,470 + +3.4
806,471 - +3.2
806,542 - +2.0
806,550 + +1.9
806,550 + +0.1
806,550 + +2.4
806,555 - +3.0
806,555 - +3.6
806,766 - HMPREF1058_RS09740 0.17 +2.4
806,766 - HMPREF1058_RS09740 0.17 +2.1
806,783 - HMPREF1058_RS09740 0.19 +0.0
806,797 + HMPREF1058_RS09740 0.20 +2.5
806,797 + HMPREF1058_RS09740 0.20 +0.8
806,883 + HMPREF1058_RS09740 0.28 +3.1
806,949 - HMPREF1058_RS09740 0.34 +1.7
806,967 + HMPREF1058_RS09740 0.35 +3.1
806,970 - HMPREF1058_RS09740 0.35 +2.1
807,021 - HMPREF1058_RS09740 0.40 +1.3
807,046 + HMPREF1058_RS09740 0.42 +1.3
807,047 - HMPREF1058_RS09740 0.42 +2.3
807,050 + HMPREF1058_RS09740 0.43 +1.8
807,101 - HMPREF1058_RS09740 0.47 +1.8
807,101 - HMPREF1058_RS09740 0.47 +3.2
807,101 - HMPREF1058_RS09740 0.47 +3.4
807,101 - HMPREF1058_RS09740 0.47 +2.4
807,129 + HMPREF1058_RS09740 0.50 +2.0
807,176 + HMPREF1058_RS09740 0.54 +1.9
807,176 + HMPREF1058_RS09740 0.54 +0.7
807,177 - HMPREF1058_RS09740 0.54 +4.0
807,279 + HMPREF1058_RS09740 0.63 +2.7
807,279 + HMPREF1058_RS09740 0.63 +1.1
807,296 + HMPREF1058_RS09740 0.65 +1.7
807,297 - HMPREF1058_RS09740 0.65 +1.5
807,400 + HMPREF1058_RS09740 0.74 +1.0
807,401 - HMPREF1058_RS09740 0.74 +3.7
807,433 - HMPREF1058_RS09740 0.77 +1.9
807,477 + HMPREF1058_RS09740 0.81 +3.1
807,485 + HMPREF1058_RS09740 0.82 +3.1
807,493 + HMPREF1058_RS09740 0.82 -0.8
807,494 - HMPREF1058_RS09740 0.82 +3.2
807,525 + HMPREF1058_RS09740 0.85 +3.9
807,525 + HMPREF1058_RS09740 0.85 +1.6

Or see this region's nucleotide sequence