Experiment: Benzoate (C), sodium fluoride stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_024730 and TX73_024735 are separated by 112 nucleotides TX73_024735 and TX73_024740 are separated by 185 nucleotides TX73_024740 and TX73_024745 are separated by 832 nucleotides
TX73_024730: TX73_024730 - alpha-amylase family glycosyl hydrolase, at 5,370,813 to 5,372,429
_024730
TX73_024735: TX73_024735 - hypothetical protein, at 5,372,542 to 5,372,757
_024735
TX73_024740: TX73_024740 - hypothetical protein, at 5,372,943 to 5,373,476
_024740
TX73_024745: TX73_024745 - hypothetical protein, at 5,374,309 to 5,374,443
_024745
Position (kb) 5372
5373
5374 Strain fitness (log2 ratio) -2
-1
0
1 at 5371.944 kb on - strand, within TX73_024730 at 5371.959 kb on + strand, within TX73_024730 at 5372.021 kb on + strand, within TX73_024730 at 5372.029 kb on - strand, within TX73_024730 at 5372.029 kb on - strand, within TX73_024730 at 5372.040 kb on - strand, within TX73_024730 at 5372.084 kb on - strand, within TX73_024730 at 5372.104 kb on + strand, within TX73_024730 at 5372.104 kb on + strand, within TX73_024730 at 5372.128 kb on + strand, within TX73_024730 at 5372.128 kb on + strand, within TX73_024730 at 5372.135 kb on + strand, within TX73_024730 at 5372.135 kb on + strand, within TX73_024730 at 5372.135 kb on + strand, within TX73_024730 at 5372.148 kb on + strand, within TX73_024730 at 5372.148 kb on + strand, within TX73_024730 at 5372.148 kb on + strand, within TX73_024730 at 5372.148 kb on + strand, within TX73_024730 at 5372.156 kb on - strand, within TX73_024730 at 5372.204 kb on - strand, within TX73_024730 at 5372.259 kb on + strand, within TX73_024730 at 5372.355 kb on + strand at 5372.363 kb on - strand at 5372.365 kb on - strand at 5372.382 kb on + strand at 5372.382 kb on + strand at 5372.385 kb on - strand at 5372.388 kb on - strand at 5372.393 kb on - strand at 5372.414 kb on - strand at 5372.441 kb on - strand at 5372.441 kb on - strand at 5372.444 kb on + strand at 5372.446 kb on - strand at 5372.464 kb on + strand at 5372.467 kb on - strand at 5372.471 kb on + strand at 5372.471 kb on + strand at 5372.471 kb on + strand at 5372.479 kb on - strand at 5372.479 kb on - strand at 5372.479 kb on - strand at 5372.484 kb on - strand at 5372.492 kb on + strand at 5372.516 kb on + strand at 5372.516 kb on + strand at 5372.516 kb on + strand at 5372.522 kb on + strand at 5372.524 kb on - strand at 5372.532 kb on - strand at 5372.572 kb on + strand, within TX73_024735 at 5372.580 kb on - strand, within TX73_024735 at 5372.591 kb on + strand, within TX73_024735 at 5372.597 kb on + strand, within TX73_024735 at 5372.602 kb on + strand, within TX73_024735 at 5372.605 kb on - strand, within TX73_024735 at 5372.609 kb on + strand, within TX73_024735 at 5372.624 kb on + strand, within TX73_024735 at 5372.632 kb on - strand, within TX73_024735 at 5372.686 kb on + strand, within TX73_024735 at 5372.695 kb on - strand, within TX73_024735 at 5372.714 kb on + strand, within TX73_024735 at 5372.714 kb on + strand, within TX73_024735 at 5372.722 kb on - strand, within TX73_024735 at 5372.722 kb on - strand, within TX73_024735 at 5372.741 kb on + strand at 5372.764 kb on + strand at 5372.818 kb on + strand at 5372.824 kb on - strand at 5372.860 kb on + strand at 5372.925 kb on + strand at 5372.933 kb on - strand at 5372.973 kb on - strand at 5373.002 kb on + strand, within TX73_024740 at 5373.010 kb on - strand, within TX73_024740 at 5373.010 kb on - strand, within TX73_024740 at 5373.022 kb on + strand, within TX73_024740 at 5373.023 kb on - strand, within TX73_024740 at 5373.025 kb on - strand, within TX73_024740 at 5373.033 kb on + strand, within TX73_024740 at 5373.052 kb on + strand, within TX73_024740 at 5373.062 kb on + strand, within TX73_024740 at 5373.062 kb on + strand, within TX73_024740 at 5373.065 kb on - strand, within TX73_024740 at 5373.091 kb on - strand, within TX73_024740 at 5373.093 kb on + strand, within TX73_024740 at 5373.093 kb on + strand, within TX73_024740 at 5373.093 kb on + strand, within TX73_024740 at 5373.096 kb on - strand, within TX73_024740 at 5373.097 kb on - strand, within TX73_024740 at 5373.101 kb on - strand, within TX73_024740 at 5373.186 kb on + strand, within TX73_024740 at 5373.186 kb on + strand, within TX73_024740 at 5373.225 kb on + strand, within TX73_024740 at 5373.225 kb on + strand, within TX73_024740 at 5373.233 kb on - strand, within TX73_024740 at 5373.233 kb on - strand, within TX73_024740 at 5373.241 kb on + strand, within TX73_024740 at 5373.246 kb on + strand, within TX73_024740 at 5373.256 kb on + strand, within TX73_024740 at 5373.259 kb on - strand, within TX73_024740 at 5373.281 kb on + strand, within TX73_024740 at 5373.301 kb on - strand, within TX73_024740 at 5373.301 kb on - strand, within TX73_024740 at 5373.310 kb on + strand, within TX73_024740 at 5373.333 kb on + strand, within TX73_024740 at 5373.342 kb on - strand, within TX73_024740 at 5373.356 kb on + strand, within TX73_024740 at 5373.401 kb on - strand, within TX73_024740 at 5373.403 kb on + strand, within TX73_024740 at 5373.406 kb on + strand, within TX73_024740 at 5373.414 kb on - strand, within TX73_024740 at 5373.424 kb on + strand at 5373.442 kb on - strand at 5373.462 kb on - strand at 5373.466 kb on - strand at 5373.494 kb on + strand at 5373.502 kb on - strand at 5373.677 kb on + strand at 5373.738 kb on - strand at 5373.771 kb on - strand at 5373.771 kb on - strand at 5373.798 kb on + strand at 5373.798 kb on + strand at 5373.798 kb on + strand at 5373.798 kb on + strand at 5373.798 kb on + strand at 5373.806 kb on - strand at 5373.806 kb on - strand at 5373.806 kb on - strand at 5373.808 kb on - strand at 5373.815 kb on + strand at 5373.815 kb on + strand at 5373.815 kb on + strand at 5373.835 kb on + strand at 5373.840 kb on + strand at 5373.850 kb on - strand at 5373.862 kb on + strand at 5373.871 kb on - strand at 5373.882 kb on - strand at 5373.884 kb on + strand at 5373.887 kb on - strand at 5373.951 kb on + strand at 5374.017 kb on - strand at 5374.019 kb on + strand at 5374.019 kb on - strand at 5374.035 kb on + strand at 5374.043 kb on - strand at 5374.073 kb on + strand at 5374.105 kb on - strand at 5374.136 kb on + strand at 5374.149 kb on + strand at 5374.152 kb on - strand at 5374.157 kb on - strand at 5374.178 kb on + strand at 5374.226 kb on - strand at 5374.238 kb on - strand at 5374.238 kb on - strand at 5374.251 kb on + strand at 5374.251 kb on + strand at 5374.251 kb on + strand at 5374.268 kb on + strand at 5374.274 kb on + strand at 5374.282 kb on - strand at 5374.282 kb on - strand at 5374.286 kb on + strand at 5374.295 kb on + strand at 5374.357 kb on + strand, within TX73_024745 at 5374.375 kb on - strand, within TX73_024745 at 5374.412 kb on + strand, within TX73_024745
Per-strain Table
Position Strand Gene LocusTag Fraction Benzoate (C), sodium fluoride stress remove 5,371,944 - TX73_024730 0.70 -0.3 5,371,959 + TX73_024730 0.71 -0.0 5,372,021 + TX73_024730 0.75 -0.1 5,372,029 - TX73_024730 0.75 +0.1 5,372,029 - TX73_024730 0.75 +0.1 5,372,040 - TX73_024730 0.76 +0.0 5,372,084 - TX73_024730 0.79 -0.9 5,372,104 + TX73_024730 0.80 -1.9 5,372,104 + TX73_024730 0.80 -1.2 5,372,128 + TX73_024730 0.81 -0.4 5,372,128 + TX73_024730 0.81 -0.4 5,372,135 + TX73_024730 0.82 -0.2 5,372,135 + TX73_024730 0.82 +0.4 5,372,135 + TX73_024730 0.82 +0.3 5,372,148 + TX73_024730 0.83 -0.5 5,372,148 + TX73_024730 0.83 -0.1 5,372,148 + TX73_024730 0.83 -0.5 5,372,148 + TX73_024730 0.83 +0.0 5,372,156 - TX73_024730 0.83 -0.6 5,372,204 - TX73_024730 0.86 +0.3 5,372,259 + TX73_024730 0.89 -0.6 5,372,355 + +0.4 5,372,363 - +0.3 5,372,365 - +1.0 5,372,382 + +0.3 5,372,382 + -0.1 5,372,385 - +0.7 5,372,388 - +0.5 5,372,393 - +0.4 5,372,414 - -0.2 5,372,441 - -1.5 5,372,441 - -0.5 5,372,444 + +0.1 5,372,446 - -0.7 5,372,464 + +0.2 5,372,467 - -0.9 5,372,471 + -0.0 5,372,471 + +1.4 5,372,471 + -0.2 5,372,479 - -1.0 5,372,479 - -1.2 5,372,479 - -0.2 5,372,484 - +0.0 5,372,492 + -0.3 5,372,516 + -0.1 5,372,516 + -0.4 5,372,516 + -0.6 5,372,522 + -0.3 5,372,524 - -0.0 5,372,532 - -1.4 5,372,572 + TX73_024735 0.14 -0.5 5,372,580 - TX73_024735 0.18 +0.2 5,372,591 + TX73_024735 0.23 -0.0 5,372,597 + TX73_024735 0.25 +0.4 5,372,602 + TX73_024735 0.28 -0.4 5,372,605 - TX73_024735 0.29 -1.6 5,372,609 + TX73_024735 0.31 +0.2 5,372,624 + TX73_024735 0.38 -0.2 5,372,632 - TX73_024735 0.42 -0.5 5,372,686 + TX73_024735 0.67 -0.4 5,372,695 - TX73_024735 0.71 -2.2 5,372,714 + TX73_024735 0.80 -0.0 5,372,714 + TX73_024735 0.80 +0.2 5,372,722 - TX73_024735 0.83 +0.6 5,372,722 - TX73_024735 0.83 +0.1 5,372,741 + -0.1 5,372,764 + -0.3 5,372,818 + -0.0 5,372,824 - +0.9 5,372,860 + +1.6 5,372,925 + -2.0 5,372,933 - +0.3 5,372,973 - -0.1 5,373,002 + TX73_024740 0.11 +0.4 5,373,010 - TX73_024740 0.13 +0.1 5,373,010 - TX73_024740 0.13 +0.2 5,373,022 + TX73_024740 0.15 -0.4 5,373,023 - TX73_024740 0.15 +0.2 5,373,025 - TX73_024740 0.15 +0.4 5,373,033 + TX73_024740 0.17 +0.6 5,373,052 + TX73_024740 0.20 +0.9 5,373,062 + TX73_024740 0.22 -0.9 5,373,062 + TX73_024740 0.22 +0.4 5,373,065 - TX73_024740 0.23 +0.0 5,373,091 - TX73_024740 0.28 -0.2 5,373,093 + TX73_024740 0.28 +0.6 5,373,093 + TX73_024740 0.28 +0.4 5,373,093 + TX73_024740 0.28 +0.4 5,373,096 - TX73_024740 0.29 +0.1 5,373,097 - TX73_024740 0.29 -0.0 5,373,101 - TX73_024740 0.30 +0.4 5,373,186 + TX73_024740 0.46 -0.3 5,373,186 + TX73_024740 0.46 +0.3 5,373,225 + TX73_024740 0.53 -0.0 5,373,225 + TX73_024740 0.53 +0.2 5,373,233 - TX73_024740 0.54 -0.2 5,373,233 - TX73_024740 0.54 -0.1 5,373,241 + TX73_024740 0.56 -1.0 5,373,246 + TX73_024740 0.57 -0.5 5,373,256 + TX73_024740 0.59 -1.1 5,373,259 - TX73_024740 0.59 +1.1 5,373,281 + TX73_024740 0.63 +0.9 5,373,301 - TX73_024740 0.67 -1.5 5,373,301 - TX73_024740 0.67 +0.7 5,373,310 + TX73_024740 0.69 +0.1 5,373,333 + TX73_024740 0.73 +0.5 5,373,342 - TX73_024740 0.75 +0.4 5,373,356 + TX73_024740 0.77 +0.3 5,373,401 - TX73_024740 0.86 +1.3 5,373,403 + TX73_024740 0.86 +0.3 5,373,406 + TX73_024740 0.87 -1.3 5,373,414 - TX73_024740 0.88 -0.5 5,373,424 + -0.1 5,373,442 - -0.4 5,373,462 - -0.2 5,373,466 - +1.6 5,373,494 + -0.3 5,373,502 - +0.7 5,373,677 + +0.3 5,373,738 - -0.6 5,373,771 - -0.0 5,373,771 - -0.1 5,373,798 + -0.2 5,373,798 + +0.1 5,373,798 + +0.0 5,373,798 + -1.1 5,373,798 + -0.3 5,373,806 - +0.5 5,373,806 - -0.6 5,373,806 - -0.3 5,373,808 - +0.2 5,373,815 + +1.4 5,373,815 + -0.2 5,373,815 + +0.9 5,373,835 + +0.6 5,373,840 + +0.2 5,373,850 - -0.3 5,373,862 + -1.2 5,373,871 - +0.3 5,373,882 - +0.4 5,373,884 + -0.0 5,373,887 - +0.2 5,373,951 + -0.5 5,374,017 - -0.1 5,374,019 + -0.2 5,374,019 - +0.4 5,374,035 + -0.0 5,374,043 - -0.8 5,374,073 + +0.0 5,374,105 - -0.2 5,374,136 + +0.8 5,374,149 + +0.5 5,374,152 - +0.4 5,374,157 - +0.1 5,374,178 + +0.2 5,374,226 - -0.3 5,374,238 - +0.1 5,374,238 - -0.3 5,374,251 + -0.4 5,374,251 + -0.6 5,374,251 + +0.2 5,374,268 + -0.1 5,374,274 + +0.4 5,374,282 - +0.4 5,374,282 - -0.9 5,374,286 + -0.3 5,374,295 + -0.2 5,374,357 + TX73_024745 0.36 -0.9 5,374,375 - TX73_024745 0.49 -0.2 5,374,412 + TX73_024745 0.76 +0.3
Or see this region's nucleotide sequence