Experiment: Benzoate (C), sodium fluoride stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_023055 and TX73_023060 are separated by 120 nucleotides TX73_023060 and TX73_023065 are separated by 830 nucleotides
TX73_023055: TX73_023055 - extensin family protein, at 5,015,400 to 5,016,473
_023055
TX73_023060: TX73_023060 - fatty-acid--CoA ligase, at 5,016,594 to 5,018,222
_023060
TX73_023065: TX73_023065 - DUF1499 domain-containing protein, at 5,019,053 to 5,019,898
_023065
Position (kb) 5016
5017
5018
5019 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5015.597 kb on - strand, within TX73_023055 at 5015.597 kb on - strand, within TX73_023055 at 5015.597 kb on - strand, within TX73_023055 at 5015.602 kb on - strand, within TX73_023055 at 5015.610 kb on - strand, within TX73_023055 at 5015.610 kb on - strand, within TX73_023055 at 5015.610 kb on - strand, within TX73_023055 at 5015.616 kb on - strand, within TX73_023055 at 5015.621 kb on - strand, within TX73_023055 at 5015.633 kb on - strand, within TX73_023055 at 5015.633 kb on - strand, within TX73_023055 at 5015.707 kb on + strand, within TX73_023055 at 5015.715 kb on - strand, within TX73_023055 at 5015.715 kb on - strand, within TX73_023055 at 5015.724 kb on + strand, within TX73_023055 at 5015.724 kb on + strand, within TX73_023055 at 5015.732 kb on - strand, within TX73_023055 at 5015.750 kb on - strand, within TX73_023055 at 5015.752 kb on - strand, within TX73_023055 at 5015.760 kb on - strand, within TX73_023055 at 5015.771 kb on + strand, within TX73_023055 at 5015.784 kb on - strand, within TX73_023055 at 5015.789 kb on - strand, within TX73_023055 at 5015.792 kb on + strand, within TX73_023055 at 5015.792 kb on + strand, within TX73_023055 at 5015.792 kb on + strand, within TX73_023055 at 5015.807 kb on + strand, within TX73_023055 at 5015.807 kb on + strand, within TX73_023055 at 5015.807 kb on + strand, within TX73_023055 at 5015.807 kb on + strand, within TX73_023055 at 5015.812 kb on + strand, within TX73_023055 at 5015.815 kb on - strand, within TX73_023055 at 5015.815 kb on - strand, within TX73_023055 at 5015.822 kb on + strand, within TX73_023055 at 5015.824 kb on + strand, within TX73_023055 at 5015.824 kb on + strand, within TX73_023055 at 5015.824 kb on + strand, within TX73_023055 at 5015.824 kb on + strand, within TX73_023055 at 5015.825 kb on - strand, within TX73_023055 at 5015.826 kb on + strand, within TX73_023055 at 5015.826 kb on + strand, within TX73_023055 at 5015.826 kb on + strand, within TX73_023055 at 5015.826 kb on + strand, within TX73_023055 at 5015.830 kb on - strand, within TX73_023055 at 5015.830 kb on - strand, within TX73_023055 at 5015.831 kb on + strand, within TX73_023055 at 5015.831 kb on + strand, within TX73_023055 at 5015.832 kb on - strand, within TX73_023055 at 5015.832 kb on - strand, within TX73_023055 at 5015.832 kb on - strand, within TX73_023055 at 5015.832 kb on - strand, within TX73_023055 at 5015.832 kb on - strand, within TX73_023055 at 5015.834 kb on - strand, within TX73_023055 at 5015.921 kb on - strand, within TX73_023055 at 5015.926 kb on - strand, within TX73_023055 at 5015.941 kb on - strand, within TX73_023055 at 5015.941 kb on - strand, within TX73_023055 at 5015.942 kb on + strand, within TX73_023055 at 5015.942 kb on - strand, within TX73_023055 at 5015.952 kb on + strand, within TX73_023055 at 5015.960 kb on - strand, within TX73_023055 at 5015.960 kb on - strand, within TX73_023055 at 5015.967 kb on - strand, within TX73_023055 at 5015.974 kb on - strand, within TX73_023055 at 5015.999 kb on + strand, within TX73_023055 at 5015.999 kb on + strand, within TX73_023055 at 5015.999 kb on + strand, within TX73_023055 at 5016.018 kb on - strand, within TX73_023055 at 5016.025 kb on + strand, within TX73_023055 at 5016.026 kb on - strand, within TX73_023055 at 5016.026 kb on - strand, within TX73_023055 at 5016.033 kb on - strand, within TX73_023055 at 5016.039 kb on + strand, within TX73_023055 at 5016.105 kb on + strand, within TX73_023055 at 5016.116 kb on - strand, within TX73_023055 at 5016.116 kb on - strand, within TX73_023055 at 5016.169 kb on + strand, within TX73_023055 at 5016.177 kb on - strand, within TX73_023055 at 5016.177 kb on - strand, within TX73_023055 at 5016.179 kb on + strand, within TX73_023055 at 5016.179 kb on + strand, within TX73_023055 at 5016.182 kb on - strand, within TX73_023055 at 5016.203 kb on + strand, within TX73_023055 at 5016.203 kb on - strand, within TX73_023055 at 5016.247 kb on + strand, within TX73_023055 at 5016.251 kb on + strand, within TX73_023055 at 5016.251 kb on + strand, within TX73_023055 at 5016.255 kb on - strand, within TX73_023055 at 5016.255 kb on - strand, within TX73_023055 at 5016.318 kb on + strand, within TX73_023055 at 5016.318 kb on + strand, within TX73_023055 at 5016.324 kb on - strand, within TX73_023055 at 5016.326 kb on - strand, within TX73_023055 at 5016.339 kb on - strand, within TX73_023055 at 5016.364 kb on - strand, within TX73_023055 at 5016.414 kb on - strand at 5016.448 kb on - strand at 5016.454 kb on + strand at 5016.473 kb on + strand at 5016.478 kb on + strand at 5016.481 kb on - strand at 5016.483 kb on + strand at 5016.486 kb on - strand at 5016.506 kb on + strand at 5016.511 kb on + strand at 5016.549 kb on - strand at 5016.611 kb on + strand at 5016.611 kb on + strand at 5016.614 kb on - strand at 5016.616 kb on + strand at 5016.638 kb on - strand at 5016.659 kb on - strand at 5016.668 kb on + strand at 5016.683 kb on - strand at 5016.704 kb on - strand at 5016.723 kb on - strand at 5016.723 kb on - strand at 5016.723 kb on - strand at 5016.756 kb on + strand at 5016.756 kb on + strand at 5016.764 kb on - strand, within TX73_023060 at 5016.764 kb on - strand, within TX73_023060 at 5016.804 kb on + strand, within TX73_023060 at 5016.804 kb on + strand, within TX73_023060 at 5016.881 kb on - strand, within TX73_023060 at 5016.929 kb on - strand, within TX73_023060 at 5016.929 kb on - strand, within TX73_023060 at 5016.945 kb on + strand, within TX73_023060 at 5016.961 kb on - strand, within TX73_023060 at 5016.966 kb on - strand, within TX73_023060 at 5017.010 kb on - strand, within TX73_023060 at 5017.011 kb on + strand, within TX73_023060 at 5017.016 kb on + strand, within TX73_023060 at 5017.016 kb on + strand, within TX73_023060 at 5017.019 kb on - strand, within TX73_023060 at 5017.043 kb on - strand, within TX73_023060 at 5017.052 kb on - strand, within TX73_023060 at 5017.052 kb on - strand, within TX73_023060 at 5017.057 kb on - strand, within TX73_023060 at 5017.063 kb on + strand, within TX73_023060 at 5017.065 kb on + strand, within TX73_023060 at 5017.085 kb on + strand, within TX73_023060 at 5017.087 kb on - strand, within TX73_023060 at 5017.139 kb on + strand, within TX73_023060 at 5017.149 kb on - strand, within TX73_023060 at 5017.149 kb on - strand, within TX73_023060 at 5017.154 kb on - strand, within TX73_023060 at 5017.162 kb on - strand, within TX73_023060 at 5017.162 kb on - strand, within TX73_023060 at 5017.164 kb on + strand, within TX73_023060 at 5017.164 kb on - strand, within TX73_023060 at 5017.165 kb on + strand, within TX73_023060 at 5017.173 kb on + strand, within TX73_023060 at 5017.181 kb on + strand, within TX73_023060 at 5017.181 kb on - strand, within TX73_023060 at 5017.191 kb on - strand, within TX73_023060 at 5017.192 kb on + strand, within TX73_023060 at 5017.192 kb on + strand, within TX73_023060 at 5017.200 kb on - strand, within TX73_023060 at 5017.292 kb on + strand, within TX73_023060 at 5017.323 kb on + strand, within TX73_023060 at 5017.346 kb on - strand, within TX73_023060 at 5017.356 kb on - strand, within TX73_023060 at 5017.378 kb on + strand, within TX73_023060 at 5017.399 kb on - strand, within TX73_023060 at 5017.408 kb on - strand, within TX73_023060 at 5017.423 kb on + strand, within TX73_023060 at 5017.448 kb on - strand, within TX73_023060 at 5017.531 kb on - strand, within TX73_023060 at 5017.557 kb on + strand, within TX73_023060 at 5017.562 kb on + strand, within TX73_023060 at 5017.575 kb on + strand, within TX73_023060 at 5017.577 kb on - strand, within TX73_023060 at 5017.719 kb on + strand, within TX73_023060 at 5017.734 kb on + strand, within TX73_023060 at 5017.740 kb on + strand, within TX73_023060 at 5017.741 kb on + strand, within TX73_023060 at 5017.750 kb on + strand, within TX73_023060 at 5017.787 kb on + strand, within TX73_023060 at 5017.834 kb on - strand, within TX73_023060 at 5017.894 kb on - strand, within TX73_023060 at 5017.898 kb on + strand, within TX73_023060 at 5017.958 kb on + strand, within TX73_023060 at 5017.958 kb on + strand, within TX73_023060 at 5017.966 kb on - strand, within TX73_023060 at 5017.966 kb on - strand, within TX73_023060 at 5017.966 kb on - strand, within TX73_023060 at 5017.966 kb on - strand, within TX73_023060 at 5018.005 kb on - strand, within TX73_023060 at 5018.041 kb on - strand, within TX73_023060 at 5018.144 kb on - strand at 5018.168 kb on - strand at 5018.194 kb on - strand at 5018.194 kb on - strand at 5018.259 kb on + strand at 5018.289 kb on + strand at 5018.304 kb on - strand at 5018.346 kb on + strand at 5018.346 kb on + strand at 5018.723 kb on + strand at 5018.735 kb on + strand at 5018.833 kb on - strand at 5018.833 kb on - strand at 5018.852 kb on - strand at 5018.888 kb on + strand at 5018.896 kb on - strand at 5018.908 kb on + strand at 5018.916 kb on + strand at 5018.916 kb on - strand at 5018.916 kb on - strand at 5018.916 kb on - strand at 5018.918 kb on + strand at 5018.950 kb on - strand at 5018.992 kb on + strand at 5019.032 kb on + strand at 5019.063 kb on + strand at 5019.093 kb on + strand at 5019.101 kb on - strand at 5019.101 kb on - strand at 5019.101 kb on - strand at 5019.101 kb on - strand at 5019.130 kb on + strand at 5019.130 kb on + strand at 5019.162 kb on + strand, within TX73_023065
Per-strain Table
Position Strand Gene LocusTag Fraction Benzoate (C), sodium fluoride stress remove 5,015,597 - TX73_023055 0.18 +1.3 5,015,597 - TX73_023055 0.18 -0.2 5,015,597 - TX73_023055 0.18 -0.1 5,015,602 - TX73_023055 0.19 -0.6 5,015,610 - TX73_023055 0.20 +0.0 5,015,610 - TX73_023055 0.20 -1.4 5,015,610 - TX73_023055 0.20 +0.0 5,015,616 - TX73_023055 0.20 +0.0 5,015,621 - TX73_023055 0.21 +0.0 5,015,633 - TX73_023055 0.22 +0.0 5,015,633 - TX73_023055 0.22 -0.0 5,015,707 + TX73_023055 0.29 +0.5 5,015,715 - TX73_023055 0.29 +0.6 5,015,715 - TX73_023055 0.29 +0.0 5,015,724 + TX73_023055 0.30 +0.3 5,015,724 + TX73_023055 0.30 -0.4 5,015,732 - TX73_023055 0.31 +1.1 5,015,750 - TX73_023055 0.33 -0.1 5,015,752 - TX73_023055 0.33 +0.5 5,015,760 - TX73_023055 0.34 +0.5 5,015,771 + TX73_023055 0.35 +0.1 5,015,784 - TX73_023055 0.36 -0.6 5,015,789 - TX73_023055 0.36 -1.6 5,015,792 + TX73_023055 0.36 -0.2 5,015,792 + TX73_023055 0.36 +0.6 5,015,792 + TX73_023055 0.36 +0.0 5,015,807 + TX73_023055 0.38 +0.6 5,015,807 + TX73_023055 0.38 +0.2 5,015,807 + TX73_023055 0.38 +1.3 5,015,807 + TX73_023055 0.38 -2.5 5,015,812 + TX73_023055 0.38 +0.2 5,015,815 - TX73_023055 0.39 -0.3 5,015,815 - TX73_023055 0.39 +0.2 5,015,822 + TX73_023055 0.39 -0.1 5,015,824 + TX73_023055 0.39 -0.1 5,015,824 + TX73_023055 0.39 -0.3 5,015,824 + TX73_023055 0.39 -0.4 5,015,824 + TX73_023055 0.39 -0.7 5,015,825 - TX73_023055 0.40 +0.6 5,015,826 + TX73_023055 0.40 -0.3 5,015,826 + TX73_023055 0.40 -0.3 5,015,826 + TX73_023055 0.40 -1.2 5,015,826 + TX73_023055 0.40 +0.4 5,015,830 - TX73_023055 0.40 -0.4 5,015,830 - TX73_023055 0.40 +0.0 5,015,831 + TX73_023055 0.40 -0.6 5,015,831 + TX73_023055 0.40 -0.1 5,015,832 - TX73_023055 0.40 +0.0 5,015,832 - TX73_023055 0.40 +0.6 5,015,832 - TX73_023055 0.40 +0.9 5,015,832 - TX73_023055 0.40 +0.8 5,015,832 - TX73_023055 0.40 -0.8 5,015,834 - TX73_023055 0.40 -0.1 5,015,921 - TX73_023055 0.49 -0.3 5,015,926 - TX73_023055 0.49 -0.9 5,015,941 - TX73_023055 0.50 +0.2 5,015,941 - TX73_023055 0.50 +1.3 5,015,942 + TX73_023055 0.50 -1.2 5,015,942 - TX73_023055 0.50 +0.4 5,015,952 + TX73_023055 0.51 +0.8 5,015,960 - TX73_023055 0.52 +0.4 5,015,960 - TX73_023055 0.52 +0.3 5,015,967 - TX73_023055 0.53 +0.4 5,015,974 - TX73_023055 0.53 -0.3 5,015,999 + TX73_023055 0.56 +0.2 5,015,999 + TX73_023055 0.56 +0.7 5,015,999 + TX73_023055 0.56 -1.7 5,016,018 - TX73_023055 0.58 +0.1 5,016,025 + TX73_023055 0.58 +0.1 5,016,026 - TX73_023055 0.58 +0.3 5,016,026 - TX73_023055 0.58 -0.1 5,016,033 - TX73_023055 0.59 -0.3 5,016,039 + TX73_023055 0.59 +0.1 5,016,105 + TX73_023055 0.66 +0.7 5,016,116 - TX73_023055 0.67 -0.4 5,016,116 - TX73_023055 0.67 +0.1 5,016,169 + TX73_023055 0.72 +0.0 5,016,177 - TX73_023055 0.72 +0.1 5,016,177 - TX73_023055 0.72 +0.9 5,016,179 + TX73_023055 0.73 -0.0 5,016,179 + TX73_023055 0.73 -0.7 5,016,182 - TX73_023055 0.73 +0.2 5,016,203 + TX73_023055 0.75 -1.5 5,016,203 - TX73_023055 0.75 +0.1 5,016,247 + TX73_023055 0.79 +0.3 5,016,251 + TX73_023055 0.79 +0.5 5,016,251 + TX73_023055 0.79 -0.5 5,016,255 - TX73_023055 0.80 +0.6 5,016,255 - TX73_023055 0.80 +0.5 5,016,318 + TX73_023055 0.85 +0.0 5,016,318 + TX73_023055 0.85 -1.1 5,016,324 - TX73_023055 0.86 +0.1 5,016,326 - TX73_023055 0.86 -0.0 5,016,339 - TX73_023055 0.87 +1.1 5,016,364 - TX73_023055 0.90 -0.1 5,016,414 - -0.4 5,016,448 - -0.4 5,016,454 + -0.4 5,016,473 + -0.6 5,016,478 + +0.0 5,016,481 - -0.7 5,016,483 + -0.5 5,016,486 - -0.1 5,016,506 + -0.1 5,016,511 + -0.6 5,016,549 - +0.4 5,016,611 + -0.2 5,016,611 + -1.6 5,016,614 - -1.4 5,016,616 + +0.7 5,016,638 - -0.8 5,016,659 - +0.5 5,016,668 + -1.0 5,016,683 - -1.5 5,016,704 - -1.3 5,016,723 - -1.2 5,016,723 - -0.5 5,016,723 - +1.9 5,016,756 + -1.0 5,016,756 + -0.5 5,016,764 - TX73_023060 0.10 -2.6 5,016,764 - TX73_023060 0.10 -0.2 5,016,804 + TX73_023060 0.13 -0.9 5,016,804 + TX73_023060 0.13 -0.7 5,016,881 - TX73_023060 0.18 -1.2 5,016,929 - TX73_023060 0.21 +0.7 5,016,929 - TX73_023060 0.21 +0.9 5,016,945 + TX73_023060 0.22 +0.5 5,016,961 - TX73_023060 0.23 -0.1 5,016,966 - TX73_023060 0.23 +1.5 5,017,010 - TX73_023060 0.26 -0.1 5,017,011 + TX73_023060 0.26 -1.2 5,017,016 + TX73_023060 0.26 -1.9 5,017,016 + TX73_023060 0.26 -1.4 5,017,019 - TX73_023060 0.26 -0.2 5,017,043 - TX73_023060 0.28 -1.0 5,017,052 - TX73_023060 0.28 +1.1 5,017,052 - TX73_023060 0.28 -1.0 5,017,057 - TX73_023060 0.28 -0.1 5,017,063 + TX73_023060 0.29 +1.3 5,017,065 + TX73_023060 0.29 -0.2 5,017,085 + TX73_023060 0.30 -0.6 5,017,087 - TX73_023060 0.30 +1.0 5,017,139 + TX73_023060 0.33 +0.4 5,017,149 - TX73_023060 0.34 +0.3 5,017,149 - TX73_023060 0.34 +0.6 5,017,154 - TX73_023060 0.34 -0.9 5,017,162 - TX73_023060 0.35 -1.1 5,017,162 - TX73_023060 0.35 -0.0 5,017,164 + TX73_023060 0.35 +0.2 5,017,164 - TX73_023060 0.35 -0.5 5,017,165 + TX73_023060 0.35 +0.4 5,017,173 + TX73_023060 0.36 +1.1 5,017,181 + TX73_023060 0.36 +0.0 5,017,181 - TX73_023060 0.36 -0.5 5,017,191 - TX73_023060 0.37 -0.0 5,017,192 + TX73_023060 0.37 -0.0 5,017,192 + TX73_023060 0.37 -0.5 5,017,200 - TX73_023060 0.37 -0.6 5,017,292 + TX73_023060 0.43 +0.5 5,017,323 + TX73_023060 0.45 +0.2 5,017,346 - TX73_023060 0.46 -0.3 5,017,356 - TX73_023060 0.47 +0.1 5,017,378 + TX73_023060 0.48 -0.5 5,017,399 - TX73_023060 0.49 -0.8 5,017,408 - TX73_023060 0.50 -0.4 5,017,423 + TX73_023060 0.51 +0.6 5,017,448 - TX73_023060 0.52 +0.2 5,017,531 - TX73_023060 0.58 -0.8 5,017,557 + TX73_023060 0.59 -0.4 5,017,562 + TX73_023060 0.59 -0.4 5,017,575 + TX73_023060 0.60 -0.2 5,017,577 - TX73_023060 0.60 -0.0 5,017,719 + TX73_023060 0.69 +0.6 5,017,734 + TX73_023060 0.70 +0.3 5,017,740 + TX73_023060 0.70 -0.2 5,017,741 + TX73_023060 0.70 -0.5 5,017,750 + TX73_023060 0.71 +0.1 5,017,787 + TX73_023060 0.73 -0.6 5,017,834 - TX73_023060 0.76 -0.4 5,017,894 - TX73_023060 0.80 -0.7 5,017,898 + TX73_023060 0.80 -1.1 5,017,958 + TX73_023060 0.84 -1.9 5,017,958 + TX73_023060 0.84 +0.9 5,017,966 - TX73_023060 0.84 -0.1 5,017,966 - TX73_023060 0.84 +1.0 5,017,966 - TX73_023060 0.84 -0.3 5,017,966 - TX73_023060 0.84 -1.6 5,018,005 - TX73_023060 0.87 -0.9 5,018,041 - TX73_023060 0.89 -2.1 5,018,144 - +0.2 5,018,168 - +0.9 5,018,194 - +0.3 5,018,194 - -0.8 5,018,259 + +0.1 5,018,289 + +0.1 5,018,304 - -0.7 5,018,346 + -0.0 5,018,346 + -0.1 5,018,723 + -0.2 5,018,735 + +0.2 5,018,833 - +0.1 5,018,833 - +0.6 5,018,852 - -0.4 5,018,888 + -0.3 5,018,896 - +0.5 5,018,908 + +1.0 5,018,916 + +0.9 5,018,916 - +0.1 5,018,916 - +0.3 5,018,916 - -0.1 5,018,918 + -0.3 5,018,950 - -0.7 5,018,992 + +1.0 5,019,032 + -0.1 5,019,063 + +0.6 5,019,093 + +0.9 5,019,101 - -0.9 5,019,101 - +0.4 5,019,101 - +0.9 5,019,101 - +1.5 5,019,130 + +0.2 5,019,130 + -0.9 5,019,162 + TX73_023065 0.13 +0.1
Or see this region's nucleotide sequence