Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_015770

Experiment: Benzoate (C), sodium fluoride stress

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzoate (C), sodium fluoride stress
3,449,515	-		TX73_015765	0.37	-1.4
3,449,524	+		TX73_015765	0.37	-1.3
3,449,529	+		TX73_015765	0.37	-0.1
3,449,532	-		TX73_015765	0.38	-1.8
3,449,547	-		TX73_015765	0.39	+0.8
3,449,601	-		TX73_015765	0.42	-1.2
3,449,685	-		TX73_015765	0.48	-1.2
3,449,781	+		TX73_015765	0.54	-1.2
3,449,786	+		TX73_015765	0.55	-1.0
3,449,789	-		TX73_015765	0.55	+1.0
3,449,826	-		TX73_015765	0.57	-0.5
3,449,881	+		TX73_015765	0.61	-1.1
3,449,881	+		TX73_015765	0.61	-0.2
3,449,881	+		TX73_015765	0.61	-1.2
3,449,881	+		TX73_015765	0.61	-1.0
3,449,881	+		TX73_015765	0.61	-1.0
3,449,889	-		TX73_015765	0.61	+2.6
3,449,889	-		TX73_015765	0.61	-1.2
3,449,889	-		TX73_015765	0.61	+0.6
3,449,889	-		TX73_015765	0.61	-1.4
3,449,958	+		TX73_015765	0.66	-0.2
3,449,963	+		TX73_015765	0.66	+0.8
3,449,992	+		TX73_015765	0.68	-0.6
3,449,992	+		TX73_015765	0.68	-1.2
3,449,993	-		TX73_015765	0.68	-0.1
3,450,000	-		TX73_015765	0.69	-0.6
3,450,033	-		TX73_015765	0.71	-0.5
3,450,034	-		TX73_015765	0.71	-0.5
3,450,034	-		TX73_015765	0.71	-1.0
3,450,069	+		TX73_015765	0.73	-0.2
3,450,071	-		TX73_015765	0.73	-0.2
3,450,126	+		TX73_015765	0.77	-2.8
3,450,126	-		TX73_015765	0.77	-0.0
3,450,145	+		TX73_015765	0.78	-1.3
3,450,153	-		TX73_015765	0.79	-2.2
3,450,173	+		TX73_015765	0.80	-1.5
3,450,178	+		TX73_015765	0.81	-1.5
3,450,182	-		TX73_015765	0.81	-0.4
3,450,183	+		TX73_015765	0.81	-1.3
3,450,224	-		TX73_015765	0.84	-2.9
3,450,226	+		TX73_015765	0.84	-0.6
3,450,230	-		TX73_015765	0.84	-1.4
3,450,234	-		TX73_015765	0.84	-1.5
3,450,240	-		TX73_015765	0.85	-1.1
3,450,241	+		TX73_015765	0.85	+0.5
3,450,249	-		TX73_015765	0.85	-0.7
3,450,316	+		TX73_015765	0.90	-1.8
3,450,323	-				+0.9
3,450,331	-				-0.2
3,450,342	-				-0.3
3,450,364	+				-1.9
3,450,443	+				-0.6
3,450,567	+				-1.9
3,450,705	-		TX73_015770	0.10	-2.5
3,450,715	-		TX73_015770	0.10	-1.3
3,450,728	-		TX73_015770	0.11	-1.1
3,450,733	+		TX73_015770	0.11	-2.8
3,450,738	-		TX73_015770	0.12	-2.5
3,450,745	+		TX73_015770	0.12	-1.2
3,450,753	-		TX73_015770	0.12	-1.1
3,450,758	-		TX73_015770	0.12	-3.0
3,450,809	-		TX73_015770	0.15	-2.9
3,450,809	-		TX73_015770	0.15	-1.6
3,450,809	-		TX73_015770	0.15	-1.4
3,450,825	+		TX73_015770	0.15	-3.7
3,450,828	-		TX73_015770	0.16	-2.8
3,450,840	-		TX73_015770	0.16	-1.9
3,450,840	-		TX73_015770	0.16	-0.1
3,450,885	+		TX73_015770	0.18	-1.2
3,450,904	-		TX73_015770	0.19	-1.4
3,450,931	-		TX73_015770	0.20	-1.1
3,450,953	+		TX73_015770	0.21	-1.1
3,450,961	-		TX73_015770	0.22	-0.6
3,450,961	-		TX73_015770	0.22	-0.9
3,450,964	+		TX73_015770	0.22	-2.5
3,450,964	+		TX73_015770	0.22	-3.3
3,450,964	+		TX73_015770	0.22	-2.2
3,450,972	-		TX73_015770	0.22	-2.1
3,450,972	-		TX73_015770	0.22	-3.3
3,450,976	+		TX73_015770	0.22	-1.3
3,450,985	+		TX73_015770	0.23	+0.4
3,450,993	-		TX73_015770	0.23	-3.1
3,450,993	-		TX73_015770	0.23	-1.4
3,450,993	-		TX73_015770	0.23	-1.7
3,450,993	-		TX73_015770	0.23	-1.1
3,451,059	-		TX73_015770	0.26	-1.2
3,451,093	-		TX73_015770	0.28	-0.7
3,451,102	+		TX73_015770	0.28	-3.6
3,451,102	+		TX73_015770	0.28	-2.3
3,451,102	+		TX73_015770	0.28	-2.7
3,451,110	-		TX73_015770	0.28	-3.8
3,451,110	-		TX73_015770	0.28	-2.0
3,451,110	-		TX73_015770	0.28	-1.2
3,451,120	-		TX73_015770	0.29	-2.3
3,451,141	+		TX73_015770	0.30	-3.2
3,451,146	+		TX73_015770	0.30	-3.4
3,451,219	+		TX73_015770	0.33	-1.2
3,451,255	+		TX73_015770	0.35	-1.8
3,451,270	+		TX73_015770	0.36	-1.4
3,451,288	-		TX73_015770	0.36	-2.4
3,451,289	-		TX73_015770	0.36	-2.6
3,451,303	+		TX73_015770	0.37	-1.5
3,451,303	+		TX73_015770	0.37	-1.0
3,451,347	-		TX73_015770	0.39	-3.4
3,451,356	+		TX73_015770	0.39	-1.6
3,451,356	+		TX73_015770	0.39	-3.2
3,451,425	-		TX73_015770	0.43	-0.8
3,451,482	-		TX73_015770	0.45	-2.5
3,451,515	+		TX73_015770	0.47	-2.2
3,451,518	+		TX73_015770	0.47	-1.4
3,451,521	-		TX73_015770	0.47	-2.9
3,451,523	-		TX73_015770	0.47	-2.0
3,451,527	+		TX73_015770	0.47	-3.0
3,451,552	-		TX73_015770	0.48	-1.9
3,451,598	+		TX73_015770	0.50	-2.7
3,451,603	-		TX73_015770	0.51	-3.0
3,451,614	+		TX73_015770	0.51	-1.6
3,451,644	+		TX73_015770	0.53	-2.4
3,451,714	-		TX73_015770	0.56	+0.6
3,451,754	-		TX73_015770	0.57	-2.0
3,451,765	+		TX73_015770	0.58	-1.7
3,451,805	+		TX73_015770	0.60	-3.2
3,451,822	-		TX73_015770	0.61	-1.4
3,451,829	+		TX73_015770	0.61	+0.2
3,451,837	-		TX73_015770	0.61	-2.7
3,451,839	+		TX73_015770	0.61	-1.7
3,451,842	-		TX73_015770	0.61	-2.7
3,451,852	-		TX73_015770	0.62	-1.1
3,451,885	-		TX73_015770	0.63	-2.3
3,451,888	+		TX73_015770	0.64	-1.5
3,451,896	-		TX73_015770	0.64	-0.5
3,451,896	-		TX73_015770	0.64	-2.0
3,451,896	-		TX73_015770	0.64	+0.0
3,451,900	+		TX73_015770	0.64	-2.0
3,451,908	+		TX73_015770	0.64	-2.3
3,451,917	-		TX73_015770	0.65	-2.1
3,451,941	+		TX73_015770	0.66	-0.2
3,451,958	-		TX73_015770	0.67	-0.1
3,451,964	-		TX73_015770	0.67	-2.5
3,451,969	+		TX73_015770	0.67	+0.0
3,451,970	-		TX73_015770	0.67	-1.5
3,451,970	-		TX73_015770	0.67	+0.0
3,451,977	-		TX73_015770	0.68	-1.5
3,452,021	+		TX73_015770	0.70	-0.7
3,452,029	-		TX73_015770	0.70	+0.0
3,452,034	+		TX73_015770	0.70	-3.0
3,452,044	+		TX73_015770	0.71	-2.4
3,452,052	-		TX73_015770	0.71	-1.2
3,452,059	+		TX73_015770	0.71	-1.8
3,452,098	+		TX73_015770	0.73	-0.5
3,452,124	+		TX73_015770	0.74	-3.8
3,452,133	+		TX73_015770	0.75	-2.5
3,452,144	+		TX73_015770	0.75	-0.4
3,452,144	+		TX73_015770	0.75	+0.4
3,452,153	-		TX73_015770	0.76	-1.6
3,452,171	-		TX73_015770	0.76	+0.8
3,452,181	+		TX73_015770	0.77	-2.0
3,452,205	+		TX73_015770	0.78	-3.8
3,452,220	-		TX73_015770	0.79	+0.8
3,452,220	-		TX73_015770	0.79	-1.7
3,452,232	+		TX73_015770	0.79	-2.8
3,452,240	-		TX73_015770	0.79	-2.8
3,452,249	-		TX73_015770	0.80	-2.4
3,452,254	+		TX73_015770	0.80	-3.2
3,452,254	+		TX73_015770	0.80	-2.2
3,452,254	+		TX73_015770	0.80	-2.8
3,452,259	+		TX73_015770	0.80	-0.6
3,452,259	+		TX73_015770	0.80	-2.5
3,452,262	-		TX73_015770	0.80	-1.4
3,452,262	-		TX73_015770	0.80	+0.2
3,452,264	+		TX73_015770	0.81	-0.4
3,452,269	+		TX73_015770	0.81	-2.2
3,452,269	+		TX73_015770	0.81	-2.2
3,452,269	+		TX73_015770	0.81	-2.8
3,452,269	+		TX73_015770	0.81	-1.0
3,452,269	+		TX73_015770	0.81	-3.0
3,452,269	+		TX73_015770	0.81	-2.0
3,452,269	+		TX73_015770	0.81	-2.3
3,452,271	-		TX73_015770	0.81	-2.4
3,452,277	-		TX73_015770	0.81	-1.4
3,452,277	-		TX73_015770	0.81	-2.2
3,452,283	-		TX73_015770	0.81	-1.6
3,452,287	-		TX73_015770	0.82	-1.5
3,452,330	+		TX73_015770	0.84	-0.6
3,452,330	+		TX73_015770	0.84	-1.1
3,452,338	-		TX73_015770	0.84	-1.1
3,452,338	-		TX73_015770	0.84	-1.6
3,452,338	-		TX73_015770	0.84	-1.3
3,452,338	-		TX73_015770	0.84	-0.8
3,452,370	-		TX73_015770	0.85	-2.4
3,452,382	+		TX73_015770	0.86	-2.1
3,452,382	+		TX73_015770	0.86	-2.3
3,452,394	-		TX73_015770	0.86	-2.0
3,452,394	-		TX73_015770	0.86	-2.0
3,452,396	+		TX73_015770	0.87	+0.0
3,452,396	+		TX73_015770	0.87	-2.5
3,452,401	+		TX73_015770	0.87	-2.8
3,452,401	+		TX73_015770	0.87	-2.1
3,452,404	-		TX73_015770	0.87	-2.0
3,452,404	-		TX73_015770	0.87	-1.6
3,452,404	-		TX73_015770	0.87	-0.7
3,452,405	+		TX73_015770	0.87	-3.4
3,452,405	+		TX73_015770	0.87	-3.2
3,452,406	+		TX73_015770	0.87	-1.7
3,452,406	+		TX73_015770	0.87	-2.3
3,452,411	+		TX73_015770	0.87	-2.0
3,452,412	-		TX73_015770	0.87	-2.1
3,452,413	-		TX73_015770	0.87	-1.9
3,452,414	+		TX73_015770	0.87	-0.9
3,452,414	-		TX73_015770	0.87	-3.3
3,452,424	+		TX73_015770	0.88	-1.1
3,452,431	+		TX73_015770	0.88	-2.6
3,452,437	-		TX73_015770	0.88	-0.5
3,452,453	-		TX73_015770	0.89	-3.1
3,452,491	+				-1.6
3,452,526	+				-3.5
3,452,526	+				-2.0
3,452,526	+				-2.4
3,452,539	-				-1.5
3,452,539	-				-2.0
3,452,592	-				-3.1
3,452,592	-				-2.8
3,452,681	+				-0.6
3,452,708	+				-0.5
3,452,713	+				+0.5
3,452,713	+				-0.1
3,452,721	-				+0.7
3,452,728	+				+0.7
3,452,752	-				+0.5
3,452,825	-				-0.1
3,452,827	+				+0.6
3,452,843	-				+0.5
3,452,846	+				-0.5
3,452,869	-				+3.4
3,453,515	+				-1.2
3,453,516	-				-0.3
3,453,517	+				-0.5
3,453,525	-				-0.7
3,453,525	-				+0.4
3,453,563	+				-0.5
3,453,563	+				-0.2
3,453,569	+				-0.1
3,453,571	-				+0.6
3,453,571	-				+0.0
3,453,576	-				+1.2
3,453,577	-				-0.1
3,453,583	+				+1.0
3,453,605	+				+0.8
3,453,613	-				-0.0
3,453,633	+		TX73_015780	0.13	-1.7
3,453,633	+		TX73_015780	0.13	-0.3
3,453,641	-		TX73_015780	0.14	+0.8
3,453,641	-		TX73_015780	0.14	+0.2
3,453,641	-		TX73_015780	0.14	+0.2
3,453,641	-		TX73_015780	0.14	+1.0
3,453,641	-		TX73_015780	0.14	-0.2
3,453,659	+		TX73_015780	0.17	+0.2
3,453,665	+		TX73_015780	0.18	+1.0
3,453,666	+		TX73_015780	0.19	-0.2
3,453,666	+		TX73_015780	0.19	-0.1
3,453,673	-		TX73_015780	0.20	+1.7
3,453,674	-		TX73_015780	0.20	+0.3
3,453,674	-		TX73_015780	0.20	-0.2