Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_022040

Experiment: Benzoate (C), sodium fluoride stress

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzoate (C), sodium fluoride stress
4,798,292	-		TX73_022035	0.30	-1.9
4,798,317	+		TX73_022035	0.32	-0.9
4,798,373	+		TX73_022035	0.36	-3.8
4,798,382	+		TX73_022035	0.37	-0.7
4,798,382	+		TX73_022035	0.37	+0.7
4,798,397	+		TX73_022035	0.38	-2.8
4,798,397	+		TX73_022035	0.38	-1.5
4,798,420	+		TX73_022035	0.39	-1.1
4,798,425	+		TX73_022035	0.40	-1.7
4,798,449	+		TX73_022035	0.41	-3.4
4,798,449	+		TX73_022035	0.41	-3.8
4,798,457	-		TX73_022035	0.42	-2.3
4,798,457	-		TX73_022035	0.42	-1.2
4,798,499	+		TX73_022035	0.45	-1.5
4,798,507	-		TX73_022035	0.45	-3.6
4,798,507	-		TX73_022035	0.45	-2.5
4,798,507	-		TX73_022035	0.45	-3.1
4,798,531	+		TX73_022035	0.47	+0.3
4,798,535	+		TX73_022035	0.47	-0.9
4,798,539	-		TX73_022035	0.47	-3.2
4,798,557	+		TX73_022035	0.49	-1.9
4,798,580	+		TX73_022035	0.50	-2.5
4,798,581	+		TX73_022035	0.50	-2.3
4,798,589	-		TX73_022035	0.51	-3.9
4,798,603	+		TX73_022035	0.52	-0.9
4,798,604	+		TX73_022035	0.52	-0.8
4,798,606	-		TX73_022035	0.52	-2.6
4,798,682	-		TX73_022035	0.57	-3.8
4,798,687	-		TX73_022035	0.58	-2.5
4,798,690	-		TX73_022035	0.58	-3.6
4,798,707	-		TX73_022035	0.59	-1.7
4,798,707	-		TX73_022035	0.59	-2.1
4,798,724	+		TX73_022035	0.60	-1.9
4,798,795	-		TX73_022035	0.65	-2.3
4,798,851	+		TX73_022035	0.69	-2.1
4,798,859	-		TX73_022035	0.70	-3.7
4,798,859	-		TX73_022035	0.70	-3.2
4,798,859	-		TX73_022035	0.70	-2.4
4,798,859	-		TX73_022035	0.70	-2.1
4,798,894	+		TX73_022035	0.72	-3.0
4,798,894	+		TX73_022035	0.72	-1.4
4,798,919	-		TX73_022035	0.74	-3.0
4,798,919	-		TX73_022035	0.74	-2.3
4,798,957	+		TX73_022035	0.76	-2.0
4,798,962	+		TX73_022035	0.77	-1.5
4,798,962	+		TX73_022035	0.77	-3.5
4,798,965	-		TX73_022035	0.77	-2.6
4,798,965	-		TX73_022035	0.77	-2.6
4,798,972	+		TX73_022035	0.77	+0.2
4,798,980	-		TX73_022035	0.78	-2.2
4,798,990	-		TX73_022035	0.79	-1.9
4,798,993	+		TX73_022035	0.79	-1.7
4,799,030	+		TX73_022035	0.81	-1.9
4,799,036	-		TX73_022035	0.82	-2.5
4,799,095	+		TX73_022035	0.86	-2.0
4,799,152	-		TX73_022035	0.90	-0.2
4,799,179	+				-2.1
4,799,203	+				-2.7
4,799,274	-				-2.7
4,799,311	-				-0.5
4,799,385	-				-0.9
4,799,387	+				-1.3
4,799,394	+				-3.6
4,799,407	-				-2.1
4,799,407	-				-1.9
4,799,417	+				-2.5
4,799,425	-				-0.9
4,799,425	-				-1.3
4,799,436	+				-2.9
4,799,451	+				-2.3
4,799,483	+				-0.7
4,799,483	+				-2.6
4,799,547	-		TX73_022040	0.13	-3.7
4,799,573	-		TX73_022040	0.14	-1.1
4,799,575	+		TX73_022040	0.14	-2.5
4,799,583	-		TX73_022040	0.14	-0.5
4,799,660	+		TX73_022040	0.18	-3.1
4,799,693	+		TX73_022040	0.20	-3.3
4,799,705	+		TX73_022040	0.20	-1.5
4,799,705	+		TX73_022040	0.20	-2.3
4,799,784	+		TX73_022040	0.24	-1.7
4,799,784	+		TX73_022040	0.24	-2.7
4,799,823	-		TX73_022040	0.26	-3.8
4,799,845	+		TX73_022040	0.27	-3.6
4,799,853	-		TX73_022040	0.27	-1.8
4,799,853	-		TX73_022040	0.27	-3.5
4,799,866	-		TX73_022040	0.28	-2.9
4,799,891	-		TX73_022040	0.29	-0.1
4,799,894	-		TX73_022040	0.29	-3.7
4,799,900	-		TX73_022040	0.30	+1.0
4,799,908	-		TX73_022040	0.30	-2.9
4,799,969	+		TX73_022040	0.33	-3.2
4,799,969	+		TX73_022040	0.33	-1.1
4,800,032	+		TX73_022040	0.36	-2.1
4,800,055	-		TX73_022040	0.37	-0.7
4,800,077	+		TX73_022040	0.38	-1.9
4,800,077	+		TX73_022040	0.38	-1.8
4,800,120	+		TX73_022040	0.40	-2.9
4,800,120	+		TX73_022040	0.40	-2.3
4,800,120	+		TX73_022040	0.40	-1.6
4,800,128	-		TX73_022040	0.41	-3.6
4,800,128	-		TX73_022040	0.41	-2.8
4,800,146	+		TX73_022040	0.41	-2.3
4,800,233	-		TX73_022040	0.46	-0.9
4,800,250	+		TX73_022040	0.46	-2.1
4,800,250	+		TX73_022040	0.46	-3.1
4,800,250	+		TX73_022040	0.46	-2.0
4,800,302	+		TX73_022040	0.49	-0.3
4,800,320	-		TX73_022040	0.50	-2.9
4,800,400	+		TX73_022040	0.54	-4.0
4,800,400	-		TX73_022040	0.54	-2.5
4,800,452	+		TX73_022040	0.56	-1.7
4,800,453	+		TX73_022040	0.56	-1.2
4,800,453	+		TX73_022040	0.56	-2.2
4,800,461	-		TX73_022040	0.57	-2.9
4,800,461	-		TX73_022040	0.57	-1.2
4,800,495	+		TX73_022040	0.58	-0.9
4,800,534	+		TX73_022040	0.60	+0.5
4,800,552	-		TX73_022040	0.61	-1.2
4,800,565	+		TX73_022040	0.62	-0.3
4,800,574	-		TX73_022040	0.62	-1.5
4,800,640	+		TX73_022040	0.65	-1.5
4,800,677	-		TX73_022040	0.67	-2.5
4,800,677	-		TX73_022040	0.67	-2.1
4,800,732	-		TX73_022040	0.70	-2.6
4,800,736	+		TX73_022040	0.70	-3.1
4,800,776	-		TX73_022040	0.72	-1.1
4,800,833	+		TX73_022040	0.75	-2.1
4,800,841	-		TX73_022040	0.75	-2.5
4,800,863	-		TX73_022040	0.76	-2.1
4,800,869	-		TX73_022040	0.76	-1.0
4,800,892	+		TX73_022040	0.77	-2.0
4,800,892	+		TX73_022040	0.77	-2.3
4,800,897	+		TX73_022040	0.78	-3.2
4,800,915	-		TX73_022040	0.79	-0.7
4,800,932	-		TX73_022040	0.79	-3.5
4,800,943	+		TX73_022040	0.80	-2.7
4,800,969	-		TX73_022040	0.81	-1.2
4,801,013	+		TX73_022040	0.83	-3.5
4,801,050	-		TX73_022040	0.85	-2.4
4,801,075	+		TX73_022040	0.86	-2.9
4,801,083	-		TX73_022040	0.87	-2.3
4,801,103	-		TX73_022040	0.88	-2.3
4,801,149	-		TX73_022040	0.90	-3.0
4,801,160	+				-2.1
4,801,178	+				-2.5
4,801,197	+				-3.1
4,801,197	+				-0.3
4,801,197	+				-1.9
4,801,205	-				-1.5
4,801,205	-				-1.9
4,801,205	-				-1.8
4,801,225	+				+0.0
4,801,282	+				-1.6
4,801,306	+				-2.7
4,801,311	+				-2.5
4,801,313	+				-3.6
4,801,356	+				-0.0
4,801,363	+				-2.4
4,801,365	+				+0.9
4,801,382	+				-1.0
4,801,392	+		TX73_022045	0.10	-0.2
4,801,418	+		TX73_022045	0.19	+0.5
4,801,428	+		TX73_022045	0.22	-1.7
4,801,428	+		TX73_022045	0.22	-3.5
4,801,462	+		TX73_022045	0.33	-1.4
4,801,481	-		TX73_022045	0.39	-3.2
4,801,485	-		TX73_022045	0.40	-2.1
4,801,496	+		TX73_022045	0.44	-1.8
4,801,576	-		TX73_022045	0.70	-3.0
4,801,593	+		TX73_022045	0.75	-1.1
4,801,648	+				-0.4
4,801,653	+				-1.3
4,801,653	+				-2.5
4,801,661	-				-0.7
4,801,661	-				-1.0
4,801,661	-				-1.7
4,801,663	+				+1.5
4,801,711	+				-3.6
4,801,791	+		TX73_022050	0.25	-1.5
4,801,799	-		TX73_022050	0.26	-3.6
4,801,802	+		TX73_022050	0.27	-4.2
4,801,810	-		TX73_022050	0.29	-2.0
4,801,817	+		TX73_022050	0.30	-3.2
4,801,821	-		TX73_022050	0.31	-3.6
4,801,825	-		TX73_022050	0.32	-3.1
4,801,863	+		TX73_022050	0.39	-2.5
4,801,984	-		TX73_022050	0.63	-2.0
4,802,074	+		TX73_022050	0.81	-1.2
4,802,082	-		TX73_022050	0.82	-1.2
4,802,082	-		TX73_022050	0.82	-3.3
4,802,082	-		TX73_022050	0.82	-3.5
4,802,095	+		TX73_022050	0.85	+0.1
4,802,103	-		TX73_022050	0.86	-1.6
4,802,130	-				-1.0
4,802,181	+				-2.2
4,802,210	-				-0.5
4,802,212	-				-2.9
4,802,214	+				-0.7
4,802,214	+				+0.9
4,802,220	+				-3.1
4,802,220	+				-1.4
4,802,220	+				-1.6
4,802,228	-		TX73_022055	0.11	-1.1
4,802,228	-		TX73_022055	0.11	-1.3
4,802,264	-		TX73_022055	0.18	-2.4
4,802,278	+		TX73_022055	0.21	-3.0
4,802,285	-		TX73_022055	0.22	-1.2
4,802,285	-		TX73_022055	0.22	-0.4
4,802,294	+		TX73_022055	0.24	-3.7
4,802,313	+		TX73_022055	0.28	-2.2
4,802,313	+		TX73_022055	0.28	-2.3