Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020425

Experiment: Benzoate (C), sodium fluoride stress

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzoate (C), sodium fluoride stress
4,451,165	+		TX73_020415	0.47	-0.7
4,451,165	+		TX73_020415	0.47	-0.5
4,451,173	-		TX73_020415	0.49	+0.0
4,451,213	-		TX73_020415	0.58	+0.3
4,451,215	+		TX73_020415	0.59	+0.1
4,451,215	+		TX73_020415	0.59	-0.1
4,451,215	+		TX73_020415	0.59	-0.0
4,451,215	+		TX73_020415	0.59	-0.7
4,451,223	-		TX73_020415	0.60	+0.0
4,451,223	-		TX73_020415	0.60	-2.0
4,451,238	-		TX73_020415	0.64	-0.4
4,451,264	+		TX73_020415	0.70	-0.6
4,451,272	-		TX73_020415	0.72	+0.1
4,451,274	+		TX73_020415	0.72	+0.9
4,451,283	+		TX73_020415	0.74	+0.0
4,451,288	-		TX73_020415	0.75	-0.9
4,451,367	+				-1.4
4,451,381	+				-0.5
4,451,388	+				+0.5
4,451,389	-				-2.8
4,451,391	-				-0.2
4,451,394	-				-0.0
4,451,401	-				+1.2
4,451,403	+				-0.1
4,451,403	+				-0.5
4,451,403	+				-0.3
4,451,410	+				-0.6
4,451,411	-				-0.5
4,451,413	+				+0.6
4,451,413	+				+0.3
4,451,418	-				-0.8
4,451,418	-				-0.2
4,451,421	-				+0.2
4,451,421	-				-0.4
4,451,442	+				+0.7
4,451,449	+				-1.7
4,451,456	-				-0.6
4,451,457	-				-0.5
4,451,457	-				+0.1
4,451,457	-				+0.3
4,451,507	+		TX73_020420	0.15	+0.3
4,451,518	+		TX73_020420	0.16	-1.0
4,451,518	+		TX73_020420	0.16	+0.1
4,451,526	-		TX73_020420	0.18	+0.8
4,451,526	-		TX73_020420	0.18	-0.6
4,451,526	-		TX73_020420	0.18	+0.2
4,451,537	+		TX73_020420	0.19	-0.4
4,451,557	-		TX73_020420	0.23	-0.1
4,451,568	-		TX73_020420	0.24	+0.5
4,451,569	+		TX73_020420	0.24	-0.9
4,451,572	-		TX73_020420	0.25	+0.7
4,451,574	+		TX73_020420	0.25	-0.4
4,451,584	+		TX73_020420	0.27	-1.4
4,451,676	-		TX73_020420	0.41	-0.5
4,451,710	+		TX73_020420	0.47	+0.1
4,451,712	-		TX73_020420	0.47	-1.2
4,451,744	+		TX73_020420	0.52	-0.5
4,451,749	+		TX73_020420	0.53	+0.6
4,451,761	+		TX73_020420	0.55	-0.1
4,451,761	+		TX73_020420	0.55	+0.1
4,451,792	-		TX73_020420	0.60	-0.7
4,451,821	+		TX73_020420	0.64	+0.6
4,451,846	-		TX73_020420	0.68	+0.1
4,451,848	-		TX73_020420	0.69	-0.4
4,451,865	+		TX73_020420	0.71	-0.0
4,451,865	+		TX73_020420	0.71	-0.1
4,451,865	+		TX73_020420	0.71	-0.4
4,451,869	-		TX73_020420	0.72	-0.9
4,451,873	-		TX73_020420	0.73	-0.1
4,451,873	-		TX73_020420	0.73	+0.3
4,451,875	-		TX73_020420	0.73	-0.1
4,451,916	-		TX73_020420	0.80	+0.1
4,451,939	-		TX73_020420	0.83	+0.1
4,451,950	+		TX73_020420	0.85	+0.5
4,451,950	+		TX73_020420	0.85	+0.5
4,451,958	+		TX73_020420	0.86	-0.1
4,451,958	+		TX73_020420	0.86	+0.2
4,451,958	+		TX73_020420	0.86	+0.3
4,451,958	+		TX73_020420	0.86	-0.3
4,451,958	-		TX73_020420	0.86	-0.1
4,451,959	+		TX73_020420	0.86	-0.1
4,451,962	-		TX73_020420	0.87	-0.1
4,451,964	+		TX73_020420	0.87	-0.2
4,451,966	-		TX73_020420	0.87	+0.3
4,451,966	-		TX73_020420	0.87	+2.1
4,451,966	-		TX73_020420	0.87	-0.8
4,451,966	-		TX73_020420	0.87	-0.2
4,451,966	-		TX73_020420	0.87	+0.4
4,451,966	-		TX73_020420	0.87	-0.1
4,451,966	-		TX73_020420	0.87	-0.7
4,451,966	-		TX73_020420	0.87	-0.7
4,451,966	-		TX73_020420	0.87	+0.3
4,451,966	-		TX73_020420	0.87	-0.2
4,451,966	-		TX73_020420	0.87	-0.8
4,451,966	-		TX73_020420	0.87	+0.4
4,451,966	-		TX73_020420	0.87	+0.0
4,451,967	-		TX73_020420	0.88	+0.3
4,451,985	+				+0.3
4,451,993	+				-0.3
4,452,011	+				+0.2
4,452,020	+				+0.6
4,452,028	-				+1.3
4,452,031	+				+0.5
4,452,039	+				+0.5
4,452,052	-				+1.0
4,452,053	-				-0.4
4,452,094	-				+0.4
4,452,099	-				+0.0
4,452,100	+				+0.8
4,452,101	+				-0.1
4,452,134	-				+0.2
4,452,134	-				+0.4
4,452,151	+				-0.2
4,452,159	-				-0.3
4,452,162	+				+0.3
4,452,176	-				+0.1
4,452,202	-				+0.5
4,452,202	-				-0.3
4,452,218	+		TX73_020425	0.13	-0.6
4,452,228	+		TX73_020425	0.15	-0.5
4,452,244	-		TX73_020425	0.19	-0.3
4,452,246	+		TX73_020425	0.20	+0.4
4,452,251	+		TX73_020425	0.21	-0.4
4,452,251	+		TX73_020425	0.21	+0.2
4,452,254	-		TX73_020425	0.21	-0.3
4,452,254	-		TX73_020425	0.21	-0.2
4,452,254	-		TX73_020425	0.21	-0.1
4,452,254	-		TX73_020425	0.21	-0.6
4,452,263	+		TX73_020425	0.23	-0.8
4,452,273	-		TX73_020425	0.26	+0.1
4,452,283	+		TX73_020425	0.28	+0.0
4,452,283	+		TX73_020425	0.28	-0.3
4,452,336	-		TX73_020425	0.40	-0.3
4,452,341	-		TX73_020425	0.41	-0.5
4,452,341	-		TX73_020425	0.41	+0.2
4,452,409	+		TX73_020425	0.56	-0.1
4,452,417	-		TX73_020425	0.58	-0.1
4,452,437	-		TX73_020425	0.63	+0.4
4,452,478	+		TX73_020425	0.72	-0.4
4,452,492	-		TX73_020425	0.75	-0.7
4,452,493	-		TX73_020425	0.76	+0.1
4,452,529	+		TX73_020425	0.84	+0.8
4,452,529	+		TX73_020425	0.84	-0.3
4,452,559	-				+0.5
4,452,577	+				+0.4
4,452,595	+				-0.1
4,452,618	-				+0.0
4,452,639	-				-0.2
4,452,640	-				+0.5
4,452,644	+				+0.5
4,452,667	-				-0.3
4,452,688	-				-0.3
4,452,690	+				-0.3
4,452,728	+				-0.0
4,452,741	+				-0.1
4,452,762	+		TX73_020430	0.12	-0.8
4,452,771	-		TX73_020430	0.14	-0.6
4,452,805	+		TX73_020430	0.21	-0.5
4,452,838	+		TX73_020430	0.27	-0.1
4,452,855	+		TX73_020430	0.30	+0.9
4,452,855	+		TX73_020430	0.30	+0.2
4,452,882	+		TX73_020430	0.36	-1.1
4,452,882	+		TX73_020430	0.36	-0.0
4,452,882	+		TX73_020430	0.36	+0.4
4,452,882	+		TX73_020430	0.36	-0.3
4,452,882	+		TX73_020430	0.36	-0.3
4,452,887	+		TX73_020430	0.37	-0.6
4,452,890	-		TX73_020430	0.37	-1.2
4,452,895	-		TX73_020430	0.38	+0.5
4,452,907	+		TX73_020430	0.41	-0.1
4,452,907	-		TX73_020430	0.41	+0.5
4,452,981	+		TX73_020430	0.55	-0.8
4,452,981	+		TX73_020430	0.55	-0.2
4,452,981	+		TX73_020430	0.55	+0.1
4,452,986	+		TX73_020430	0.56	-1.0
4,452,986	+		TX73_020430	0.56	-0.4
4,452,986	+		TX73_020430	0.56	-0.6
4,452,989	-		TX73_020430	0.57	-0.0
4,452,989	-		TX73_020430	0.57	-0.2
4,452,989	-		TX73_020430	0.57	-0.2
4,452,989	-		TX73_020430	0.57	+0.7
4,452,994	-		TX73_020430	0.58	-0.3
4,453,010	+		TX73_020430	0.61	-0.8
4,453,018	-		TX73_020430	0.63	-0.4
4,453,018	-		TX73_020430	0.63	-0.6
4,453,018	-		TX73_020430	0.63	+0.4
4,453,023	-		TX73_020430	0.64	-0.1
4,453,024	+		TX73_020430	0.64	-0.3
4,453,034	+		TX73_020430	0.66	+0.3
4,453,042	-		TX73_020430	0.67	+0.5
4,453,045	+		TX73_020430	0.68	-0.1
4,453,053	-		TX73_020430	0.69	+0.4
4,453,053	-		TX73_020430	0.69	+0.8
4,453,053	-		TX73_020430	0.69	-0.0
4,453,121	-		TX73_020430	0.83	+0.2
4,453,124	-		TX73_020430	0.83	+0.2
4,453,132	-		TX73_020430	0.85	-0.3
4,453,142	-		TX73_020430	0.87	+1.0
4,453,187	-				-0.0
4,453,189	-				+0.2
4,453,226	-				-1.0
4,453,237	+				-0.4
4,453,244	+				-1.1
4,453,244	+				-1.1
4,453,250	-				+0.1
4,453,271	-				-0.2
4,453,339	-				-0.1
4,453,352	-				-0.1
4,453,352	-				-0.5
4,453,366	-				+1.2
4,453,388	-				+0.4
4,453,393	-				+0.5
4,453,402	+				-1.0
4,453,424	+				+0.5
4,453,432	+				+0.4
4,453,435	+				+1.4
4,453,443	-				+0.1
4,453,443	-				+0.3
4,453,457	-				+0.2
4,453,458	-				+0.2
4,453,458	-				-0.1
4,453,458	-				+0.5
4,453,460	+				-0.7
4,453,460	+				+0.1
4,453,488	+				-0.0
4,453,495	+				-0.1
4,453,496	-				-0.1
4,453,512	+				+0.4
4,453,536	+				+0.3
4,453,557	+				-0.4
4,453,562	+				+0.8
4,453,562	+				-0.2