Experiment: Benzoate (C), sodium fluoride stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_020405 and TX73_020410 are separated by 140 nucleotides TX73_020410 and TX73_020415 are separated by 43 nucleotides TX73_020415 and TX73_020420 are separated by 21 nucleotides TX73_020420 and TX73_020425 are separated by 115 nucleotides
TX73_020405: TX73_020405 - FAD-binding oxidoreductase, at 4,448,787 to 4,450,247
_020405
TX73_020410: TX73_020410 - histidine phosphatase family protein, at 4,450,388 to 4,450,918
_020410
TX73_020415: TX73_020415 - universal stress protein, at 4,450,962 to 4,451,393
_020415
TX73_020420: TX73_020420 - hypothetical protein, at 4,451,415 to 4,452,044
_020420
TX73_020425: TX73_020425 - hypothetical protein, at 4,452,160 to 4,452,600
_020425
Position (kb) 4450
4451
4452 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4449.963 kb on - strand, within TX73_020405 at 4449.963 kb on - strand, within TX73_020405 at 4449.999 kb on + strand, within TX73_020405 at 4449.999 kb on + strand, within TX73_020405 at 4450.000 kb on + strand, within TX73_020405 at 4450.000 kb on + strand, within TX73_020405 at 4450.006 kb on - strand, within TX73_020405 at 4450.010 kb on + strand, within TX73_020405 at 4450.012 kb on - strand, within TX73_020405 at 4450.060 kb on + strand, within TX73_020405 at 4450.078 kb on - strand, within TX73_020405 at 4450.088 kb on - strand, within TX73_020405 at 4450.094 kb on - strand, within TX73_020405 at 4450.116 kb on - strand at 4450.124 kb on + strand at 4450.145 kb on + strand at 4450.153 kb on - strand at 4450.153 kb on - strand at 4450.164 kb on + strand at 4450.165 kb on - strand at 4450.172 kb on - strand at 4450.203 kb on - strand at 4450.254 kb on + strand at 4450.262 kb on - strand at 4450.314 kb on + strand at 4450.314 kb on + strand at 4450.323 kb on + strand at 4450.331 kb on - strand at 4450.351 kb on + strand at 4450.385 kb on - strand at 4450.403 kb on - strand at 4450.403 kb on - strand at 4450.421 kb on + strand at 4450.498 kb on - strand, within TX73_020410 at 4450.530 kb on - strand, within TX73_020410 at 4450.555 kb on + strand, within TX73_020410 at 4450.560 kb on + strand, within TX73_020410 at 4450.565 kb on + strand, within TX73_020410 at 4450.602 kb on - strand, within TX73_020410 at 4450.613 kb on - strand, within TX73_020410 at 4450.635 kb on - strand, within TX73_020410 at 4450.647 kb on - strand, within TX73_020410 at 4450.694 kb on - strand, within TX73_020410 at 4450.700 kb on - strand, within TX73_020410 at 4450.700 kb on - strand, within TX73_020410 at 4450.722 kb on + strand, within TX73_020410 at 4450.722 kb on + strand, within TX73_020410 at 4450.724 kb on - strand, within TX73_020410 at 4450.753 kb on + strand, within TX73_020410 at 4450.780 kb on + strand, within TX73_020410 at 4450.788 kb on - strand, within TX73_020410 at 4450.789 kb on + strand, within TX73_020410 at 4450.795 kb on - strand, within TX73_020410 at 4450.797 kb on - strand, within TX73_020410 at 4450.825 kb on - strand, within TX73_020410 at 4450.874 kb on + strand at 4450.899 kb on - strand at 4450.913 kb on + strand at 4450.921 kb on - strand at 4450.955 kb on - strand at 4450.994 kb on + strand at 4450.994 kb on + strand at 4450.994 kb on + strand at 4451.057 kb on - strand, within TX73_020415 at 4451.150 kb on + strand, within TX73_020415 at 4451.158 kb on - strand, within TX73_020415 at 4451.165 kb on + strand, within TX73_020415 at 4451.165 kb on + strand, within TX73_020415 at 4451.173 kb on - strand, within TX73_020415 at 4451.213 kb on - strand, within TX73_020415 at 4451.215 kb on + strand, within TX73_020415 at 4451.215 kb on + strand, within TX73_020415 at 4451.215 kb on + strand, within TX73_020415 at 4451.215 kb on + strand, within TX73_020415 at 4451.223 kb on - strand, within TX73_020415 at 4451.223 kb on - strand, within TX73_020415 at 4451.238 kb on - strand, within TX73_020415 at 4451.264 kb on + strand, within TX73_020415 at 4451.272 kb on - strand, within TX73_020415 at 4451.274 kb on + strand, within TX73_020415 at 4451.283 kb on + strand, within TX73_020415 at 4451.288 kb on - strand, within TX73_020415 at 4451.367 kb on + strand at 4451.381 kb on + strand at 4451.388 kb on + strand at 4451.389 kb on - strand at 4451.391 kb on - strand at 4451.394 kb on - strand at 4451.401 kb on - strand at 4451.403 kb on + strand at 4451.403 kb on + strand at 4451.403 kb on + strand at 4451.410 kb on + strand at 4451.411 kb on - strand at 4451.413 kb on + strand at 4451.413 kb on + strand at 4451.418 kb on - strand at 4451.418 kb on - strand at 4451.421 kb on - strand at 4451.421 kb on - strand at 4451.442 kb on + strand at 4451.449 kb on + strand at 4451.456 kb on - strand at 4451.457 kb on - strand at 4451.457 kb on - strand at 4451.457 kb on - strand at 4451.507 kb on + strand, within TX73_020420 at 4451.518 kb on + strand, within TX73_020420 at 4451.518 kb on + strand, within TX73_020420 at 4451.526 kb on - strand, within TX73_020420 at 4451.526 kb on - strand, within TX73_020420 at 4451.526 kb on - strand, within TX73_020420 at 4451.537 kb on + strand, within TX73_020420 at 4451.557 kb on - strand, within TX73_020420 at 4451.568 kb on - strand, within TX73_020420 at 4451.569 kb on + strand, within TX73_020420 at 4451.572 kb on - strand, within TX73_020420 at 4451.574 kb on + strand, within TX73_020420 at 4451.584 kb on + strand, within TX73_020420 at 4451.676 kb on - strand, within TX73_020420 at 4451.710 kb on + strand, within TX73_020420 at 4451.712 kb on - strand, within TX73_020420 at 4451.744 kb on + strand, within TX73_020420 at 4451.749 kb on + strand, within TX73_020420 at 4451.761 kb on + strand, within TX73_020420 at 4451.761 kb on + strand, within TX73_020420 at 4451.792 kb on - strand, within TX73_020420 at 4451.821 kb on + strand, within TX73_020420 at 4451.846 kb on - strand, within TX73_020420 at 4451.848 kb on - strand, within TX73_020420 at 4451.865 kb on + strand, within TX73_020420 at 4451.865 kb on + strand, within TX73_020420 at 4451.865 kb on + strand, within TX73_020420 at 4451.869 kb on - strand, within TX73_020420 at 4451.873 kb on - strand, within TX73_020420 at 4451.873 kb on - strand, within TX73_020420 at 4451.875 kb on - strand, within TX73_020420 at 4451.916 kb on - strand, within TX73_020420 at 4451.939 kb on - strand, within TX73_020420 at 4451.950 kb on + strand, within TX73_020420 at 4451.950 kb on + strand, within TX73_020420 at 4451.958 kb on + strand, within TX73_020420 at 4451.958 kb on + strand, within TX73_020420 at 4451.958 kb on + strand, within TX73_020420 at 4451.958 kb on + strand, within TX73_020420 at 4451.958 kb on - strand, within TX73_020420 at 4451.959 kb on + strand, within TX73_020420 at 4451.962 kb on - strand, within TX73_020420 at 4451.964 kb on + strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.966 kb on - strand, within TX73_020420 at 4451.967 kb on - strand, within TX73_020420 at 4451.985 kb on + strand at 4451.993 kb on + strand at 4452.011 kb on + strand at 4452.020 kb on + strand at 4452.028 kb on - strand at 4452.031 kb on + strand at 4452.039 kb on + strand at 4452.052 kb on - strand at 4452.053 kb on - strand at 4452.094 kb on - strand at 4452.099 kb on - strand at 4452.100 kb on + strand at 4452.101 kb on + strand at 4452.134 kb on - strand at 4452.134 kb on - strand at 4452.151 kb on + strand at 4452.159 kb on - strand at 4452.162 kb on + strand at 4452.176 kb on - strand at 4452.202 kb on - strand at 4452.202 kb on - strand at 4452.218 kb on + strand, within TX73_020425 at 4452.228 kb on + strand, within TX73_020425 at 4452.244 kb on - strand, within TX73_020425 at 4452.246 kb on + strand, within TX73_020425 at 4452.251 kb on + strand, within TX73_020425 at 4452.251 kb on + strand, within TX73_020425 at 4452.254 kb on - strand, within TX73_020425 at 4452.254 kb on - strand, within TX73_020425 at 4452.254 kb on - strand, within TX73_020425 at 4452.254 kb on - strand, within TX73_020425 at 4452.263 kb on + strand, within TX73_020425 at 4452.273 kb on - strand, within TX73_020425 at 4452.283 kb on + strand, within TX73_020425 at 4452.283 kb on + strand, within TX73_020425 at 4452.336 kb on - strand, within TX73_020425 at 4452.341 kb on - strand, within TX73_020425 at 4452.341 kb on - strand, within TX73_020425
Per-strain Table
Position Strand Gene LocusTag Fraction Benzoate (C), sodium fluoride stress remove 4,449,963 - TX73_020405 0.80 +1.2 4,449,963 - TX73_020405 0.80 -0.6 4,449,999 + TX73_020405 0.83 -0.3 4,449,999 + TX73_020405 0.83 +2.2 4,450,000 + TX73_020405 0.83 +1.5 4,450,000 + TX73_020405 0.83 +1.3 4,450,006 - TX73_020405 0.83 +0.8 4,450,010 + TX73_020405 0.84 +0.9 4,450,012 - TX73_020405 0.84 +1.0 4,450,060 + TX73_020405 0.87 -0.8 4,450,078 - TX73_020405 0.88 -0.4 4,450,088 - TX73_020405 0.89 +0.6 4,450,094 - TX73_020405 0.89 +1.2 4,450,116 - +1.3 4,450,124 + +1.1 4,450,145 + +2.5 4,450,153 - -1.8 4,450,153 - +0.5 4,450,164 + +0.8 4,450,165 - +0.9 4,450,172 - +1.0 4,450,203 - +0.1 4,450,254 + +1.4 4,450,262 - -1.7 4,450,314 + +1.2 4,450,314 + +1.1 4,450,323 + +0.8 4,450,331 - +0.8 4,450,351 + +0.5 4,450,385 - +0.2 4,450,403 - -2.4 4,450,403 - -3.1 4,450,421 + -0.4 4,450,498 - TX73_020410 0.21 -1.7 4,450,530 - TX73_020410 0.27 -3.3 4,450,555 + TX73_020410 0.31 -3.5 4,450,560 + TX73_020410 0.32 -3.3 4,450,565 + TX73_020410 0.33 -2.8 4,450,602 - TX73_020410 0.40 -2.7 4,450,613 - TX73_020410 0.42 -3.4 4,450,635 - TX73_020410 0.47 -3.3 4,450,647 - TX73_020410 0.49 -1.4 4,450,694 - TX73_020410 0.58 -3.9 4,450,700 - TX73_020410 0.59 -1.1 4,450,700 - TX73_020410 0.59 -1.7 4,450,722 + TX73_020410 0.63 -2.8 4,450,722 + TX73_020410 0.63 -2.9 4,450,724 - TX73_020410 0.63 -1.5 4,450,753 + TX73_020410 0.69 -2.9 4,450,780 + TX73_020410 0.74 -2.6 4,450,788 - TX73_020410 0.75 -2.9 4,450,789 + TX73_020410 0.76 -2.8 4,450,795 - TX73_020410 0.77 +0.3 4,450,797 - TX73_020410 0.77 -2.9 4,450,825 - TX73_020410 0.82 -1.9 4,450,874 + -3.1 4,450,899 - -2.2 4,450,913 + -0.4 4,450,921 - -0.3 4,450,955 - -0.2 4,450,994 + -0.0 4,450,994 + -0.2 4,450,994 + -0.1 4,451,057 - TX73_020415 0.22 +0.3 4,451,150 + TX73_020415 0.44 -1.2 4,451,158 - TX73_020415 0.45 -0.0 4,451,165 + TX73_020415 0.47 -0.7 4,451,165 + TX73_020415 0.47 -0.5 4,451,173 - TX73_020415 0.49 +0.0 4,451,213 - TX73_020415 0.58 +0.3 4,451,215 + TX73_020415 0.59 +0.1 4,451,215 + TX73_020415 0.59 -0.1 4,451,215 + TX73_020415 0.59 -0.0 4,451,215 + TX73_020415 0.59 -0.7 4,451,223 - TX73_020415 0.60 +0.0 4,451,223 - TX73_020415 0.60 -2.0 4,451,238 - TX73_020415 0.64 -0.4 4,451,264 + TX73_020415 0.70 -0.6 4,451,272 - TX73_020415 0.72 +0.1 4,451,274 + TX73_020415 0.72 +0.9 4,451,283 + TX73_020415 0.74 +0.0 4,451,288 - TX73_020415 0.75 -0.9 4,451,367 + -1.4 4,451,381 + -0.5 4,451,388 + +0.5 4,451,389 - -2.8 4,451,391 - -0.2 4,451,394 - -0.0 4,451,401 - +1.2 4,451,403 + -0.1 4,451,403 + -0.5 4,451,403 + -0.3 4,451,410 + -0.6 4,451,411 - -0.5 4,451,413 + +0.6 4,451,413 + +0.3 4,451,418 - -0.8 4,451,418 - -0.2 4,451,421 - +0.2 4,451,421 - -0.4 4,451,442 + +0.7 4,451,449 + -1.7 4,451,456 - -0.6 4,451,457 - -0.5 4,451,457 - +0.1 4,451,457 - +0.3 4,451,507 + TX73_020420 0.15 +0.3 4,451,518 + TX73_020420 0.16 -1.0 4,451,518 + TX73_020420 0.16 +0.1 4,451,526 - TX73_020420 0.18 +0.8 4,451,526 - TX73_020420 0.18 -0.6 4,451,526 - TX73_020420 0.18 +0.2 4,451,537 + TX73_020420 0.19 -0.4 4,451,557 - TX73_020420 0.23 -0.1 4,451,568 - TX73_020420 0.24 +0.5 4,451,569 + TX73_020420 0.24 -0.9 4,451,572 - TX73_020420 0.25 +0.7 4,451,574 + TX73_020420 0.25 -0.4 4,451,584 + TX73_020420 0.27 -1.4 4,451,676 - TX73_020420 0.41 -0.5 4,451,710 + TX73_020420 0.47 +0.1 4,451,712 - TX73_020420 0.47 -1.2 4,451,744 + TX73_020420 0.52 -0.5 4,451,749 + TX73_020420 0.53 +0.6 4,451,761 + TX73_020420 0.55 -0.1 4,451,761 + TX73_020420 0.55 +0.1 4,451,792 - TX73_020420 0.60 -0.7 4,451,821 + TX73_020420 0.64 +0.6 4,451,846 - TX73_020420 0.68 +0.1 4,451,848 - TX73_020420 0.69 -0.4 4,451,865 + TX73_020420 0.71 -0.0 4,451,865 + TX73_020420 0.71 -0.1 4,451,865 + TX73_020420 0.71 -0.4 4,451,869 - TX73_020420 0.72 -0.9 4,451,873 - TX73_020420 0.73 -0.1 4,451,873 - TX73_020420 0.73 +0.3 4,451,875 - TX73_020420 0.73 -0.1 4,451,916 - TX73_020420 0.80 +0.1 4,451,939 - TX73_020420 0.83 +0.1 4,451,950 + TX73_020420 0.85 +0.5 4,451,950 + TX73_020420 0.85 +0.5 4,451,958 + TX73_020420 0.86 -0.1 4,451,958 + TX73_020420 0.86 +0.2 4,451,958 + TX73_020420 0.86 +0.3 4,451,958 + TX73_020420 0.86 -0.3 4,451,958 - TX73_020420 0.86 -0.1 4,451,959 + TX73_020420 0.86 -0.1 4,451,962 - TX73_020420 0.87 -0.1 4,451,964 + TX73_020420 0.87 -0.2 4,451,966 - TX73_020420 0.87 +0.3 4,451,966 - TX73_020420 0.87 +2.1 4,451,966 - TX73_020420 0.87 -0.8 4,451,966 - TX73_020420 0.87 -0.2 4,451,966 - TX73_020420 0.87 +0.4 4,451,966 - TX73_020420 0.87 -0.1 4,451,966 - TX73_020420 0.87 -0.7 4,451,966 - TX73_020420 0.87 -0.7 4,451,966 - TX73_020420 0.87 +0.3 4,451,966 - TX73_020420 0.87 -0.2 4,451,966 - TX73_020420 0.87 -0.8 4,451,966 - TX73_020420 0.87 +0.4 4,451,966 - TX73_020420 0.87 +0.0 4,451,967 - TX73_020420 0.88 +0.3 4,451,985 + +0.3 4,451,993 + -0.3 4,452,011 + +0.2 4,452,020 + +0.6 4,452,028 - +1.3 4,452,031 + +0.5 4,452,039 + +0.5 4,452,052 - +1.0 4,452,053 - -0.4 4,452,094 - +0.4 4,452,099 - +0.0 4,452,100 + +0.8 4,452,101 + -0.1 4,452,134 - +0.2 4,452,134 - +0.4 4,452,151 + -0.2 4,452,159 - -0.3 4,452,162 + +0.3 4,452,176 - +0.1 4,452,202 - +0.5 4,452,202 - -0.3 4,452,218 + TX73_020425 0.13 -0.6 4,452,228 + TX73_020425 0.15 -0.5 4,452,244 - TX73_020425 0.19 -0.3 4,452,246 + TX73_020425 0.20 +0.4 4,452,251 + TX73_020425 0.21 -0.4 4,452,251 + TX73_020425 0.21 +0.2 4,452,254 - TX73_020425 0.21 -0.3 4,452,254 - TX73_020425 0.21 -0.2 4,452,254 - TX73_020425 0.21 -0.1 4,452,254 - TX73_020425 0.21 -0.6 4,452,263 + TX73_020425 0.23 -0.8 4,452,273 - TX73_020425 0.26 +0.1 4,452,283 + TX73_020425 0.28 +0.0 4,452,283 + TX73_020425 0.28 -0.3 4,452,336 - TX73_020425 0.40 -0.3 4,452,341 - TX73_020425 0.41 -0.5 4,452,341 - TX73_020425 0.41 +0.2
Or see this region's nucleotide sequence