Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019750

Experiment: Benzoate (C), sodium fluoride stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_019745 and TX73_019750 are separated by 140 nucleotidesTX73_019750 and TX73_019755 are separated by 269 nucleotides TX73_019745: TX73_019745 - P1 family peptidase, at 4,309,940 to 4,310,944 _019745 TX73_019750: TX73_019750 - EF-hand domain-containing protein, at 4,311,085 to 4,311,855 _019750 TX73_019755: TX73_019755 - ribulose-phosphate 3-epimerase, at 4,312,125 to 4,312,823 _019755 Position (kb) 4311 4312Strain fitness (log2 ratio) -3 -2 -1 0 1at 4310.086 kb on - strand, within TX73_019745at 4310.102 kb on + strand, within TX73_019745at 4310.103 kb on - strand, within TX73_019745at 4310.103 kb on - strand, within TX73_019745at 4310.104 kb on + strand, within TX73_019745at 4310.112 kb on - strand, within TX73_019745at 4310.112 kb on - strand, within TX73_019745at 4310.120 kb on - strand, within TX73_019745at 4310.130 kb on + strand, within TX73_019745at 4310.138 kb on + strand, within TX73_019745at 4310.140 kb on + strand, within TX73_019745at 4310.180 kb on + strand, within TX73_019745at 4310.185 kb on + strand, within TX73_019745at 4310.185 kb on + strand, within TX73_019745at 4310.188 kb on - strand, within TX73_019745at 4310.234 kb on + strand, within TX73_019745at 4310.250 kb on + strand, within TX73_019745at 4310.287 kb on + strand, within TX73_019745at 4310.287 kb on + strand, within TX73_019745at 4310.287 kb on + strand, within TX73_019745at 4310.295 kb on - strand, within TX73_019745at 4310.295 kb on - strand, within TX73_019745at 4310.296 kb on - strand, within TX73_019745at 4310.299 kb on + strand, within TX73_019745at 4310.302 kb on - strand, within TX73_019745at 4310.307 kb on - strand, within TX73_019745at 4310.307 kb on - strand, within TX73_019745at 4310.318 kb on - strand, within TX73_019745at 4310.362 kb on + strand, within TX73_019745at 4310.370 kb on - strand, within TX73_019745at 4310.401 kb on + strand, within TX73_019745at 4310.401 kb on + strand, within TX73_019745at 4310.409 kb on - strand, within TX73_019745at 4310.437 kb on + strand, within TX73_019745at 4310.468 kb on - strand, within TX73_019745at 4310.473 kb on - strand, within TX73_019745at 4310.478 kb on - strand, within TX73_019745at 4310.517 kb on + strand, within TX73_019745at 4310.520 kb on - strand, within TX73_019745at 4310.520 kb on - strand, within TX73_019745at 4310.520 kb on - strand, within TX73_019745at 4310.525 kb on - strand, within TX73_019745at 4310.525 kb on - strand, within TX73_019745at 4310.525 kb on - strand, within TX73_019745at 4310.525 kb on - strand, within TX73_019745at 4310.564 kb on + strand, within TX73_019745at 4310.599 kb on + strand, within TX73_019745at 4310.605 kb on - strand, within TX73_019745at 4310.633 kb on - strand, within TX73_019745at 4310.635 kb on - strand, within TX73_019745at 4310.644 kb on + strand, within TX73_019745at 4310.661 kb on - strand, within TX73_019745at 4310.691 kb on - strand, within TX73_019745at 4310.691 kb on - strand, within TX73_019745at 4310.700 kb on - strand, within TX73_019745at 4310.712 kb on - strand, within TX73_019745at 4310.722 kb on - strand, within TX73_019745at 4310.765 kb on + strand, within TX73_019745at 4310.816 kb on + strand, within TX73_019745at 4310.829 kb on - strand, within TX73_019745at 4310.831 kb on + strand, within TX73_019745at 4310.848 kb on + strandat 4310.849 kb on - strandat 4310.878 kb on + strandat 4310.893 kb on + strandat 4310.946 kb on - strandat 4310.952 kb on + strandat 4310.957 kb on + strandat 4310.957 kb on + strandat 4310.965 kb on - strandat 4310.985 kb on - strandat 4311.071 kb on - strandat 4311.094 kb on + strandat 4311.117 kb on - strandat 4311.124 kb on + strandat 4311.127 kb on - strandat 4311.184 kb on + strand, within TX73_019750at 4311.192 kb on - strand, within TX73_019750at 4311.248 kb on + strand, within TX73_019750at 4311.253 kb on + strand, within TX73_019750at 4311.261 kb on - strand, within TX73_019750at 4311.283 kb on + strand, within TX73_019750at 4311.283 kb on + strand, within TX73_019750at 4311.287 kb on - strand, within TX73_019750at 4311.291 kb on - strand, within TX73_019750at 4311.336 kb on - strand, within TX73_019750at 4311.369 kb on + strand, within TX73_019750at 4311.401 kb on + strand, within TX73_019750at 4311.402 kb on - strand, within TX73_019750at 4311.402 kb on - strand, within TX73_019750at 4311.414 kb on + strand, within TX73_019750at 4311.553 kb on - strand, within TX73_019750at 4311.553 kb on - strand, within TX73_019750at 4311.555 kb on + strand, within TX73_019750at 4311.562 kb on - strand, within TX73_019750at 4311.562 kb on - strand, within TX73_019750at 4311.562 kb on - strand, within TX73_019750at 4311.568 kb on - strand, within TX73_019750at 4311.588 kb on + strand, within TX73_019750at 4311.628 kb on + strand, within TX73_019750at 4311.629 kb on - strand, within TX73_019750at 4311.666 kb on - strand, within TX73_019750at 4311.692 kb on + strand, within TX73_019750at 4311.700 kb on + strand, within TX73_019750at 4311.806 kb on + strandat 4311.806 kb on + strandat 4311.806 kb on + strandat 4311.814 kb on - strandat 4311.814 kb on - strandat 4311.814 kb on - strandat 4311.814 kb on - strandat 4311.815 kb on + strandat 4311.820 kb on + strandat 4311.823 kb on - strandat 4311.874 kb on - strandat 4311.876 kb on - strandat 4311.884 kb on - strandat 4311.888 kb on + strandat 4311.918 kb on - strandat 4312.002 kb on + strandat 4312.002 kb on + strandat 4312.025 kb on + strandat 4312.030 kb on + strandat 4312.032 kb on - strandat 4312.052 kb on - strandat 4312.090 kb on + strandat 4312.100 kb on + strandat 4312.108 kb on - strandat 4312.109 kb on - strandat 4312.120 kb on - strandat 4312.120 kb on - strandat 4312.127 kb on - strandat 4312.127 kb on - strandat 4312.817 kb on + strandat 4312.817 kb on + strandat 4312.817 kb on + strandat 4312.843 kb on + strandat 4312.848 kb on + strandat 4312.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzoate (C), sodium fluoride stress
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4,310,086 - TX73_019745 0.15 +0.5
4,310,102 + TX73_019745 0.16 +1.0
4,310,103 - TX73_019745 0.16 -0.1
4,310,103 - TX73_019745 0.16 -0.1
4,310,104 + TX73_019745 0.16 +1.4
4,310,112 - TX73_019745 0.17 +1.1
4,310,112 - TX73_019745 0.17 -0.0
4,310,120 - TX73_019745 0.18 +0.8
4,310,130 + TX73_019745 0.19 +0.7
4,310,138 + TX73_019745 0.20 +0.4
4,310,140 + TX73_019745 0.20 -0.0
4,310,180 + TX73_019745 0.24 +1.0
4,310,185 + TX73_019745 0.24 +0.1
4,310,185 + TX73_019745 0.24 +0.8
4,310,188 - TX73_019745 0.25 -0.6
4,310,234 + TX73_019745 0.29 +1.7
4,310,250 + TX73_019745 0.31 +0.3
4,310,287 + TX73_019745 0.35 +1.1
4,310,287 + TX73_019745 0.35 +0.4
4,310,287 + TX73_019745 0.35 +0.4
4,310,295 - TX73_019745 0.35 +0.2
4,310,295 - TX73_019745 0.35 -0.2
4,310,296 - TX73_019745 0.35 +1.1
4,310,299 + TX73_019745 0.36 +0.5
4,310,302 - TX73_019745 0.36 +0.4
4,310,307 - TX73_019745 0.37 +0.6
4,310,307 - TX73_019745 0.37 +1.3
4,310,318 - TX73_019745 0.38 +0.9
4,310,362 + TX73_019745 0.42 +0.2
4,310,370 - TX73_019745 0.43 +0.1
4,310,401 + TX73_019745 0.46 +0.6
4,310,401 + TX73_019745 0.46 +0.7
4,310,409 - TX73_019745 0.47 +0.7
4,310,437 + TX73_019745 0.49 +0.2
4,310,468 - TX73_019745 0.53 +0.1
4,310,473 - TX73_019745 0.53 +1.1
4,310,478 - TX73_019745 0.54 +0.3
4,310,517 + TX73_019745 0.57 +0.7
4,310,520 - TX73_019745 0.58 +0.4
4,310,520 - TX73_019745 0.58 +1.2
4,310,520 - TX73_019745 0.58 +0.2
4,310,525 - TX73_019745 0.58 +0.6
4,310,525 - TX73_019745 0.58 +1.4
4,310,525 - TX73_019745 0.58 +0.1
4,310,525 - TX73_019745 0.58 -0.2
4,310,564 + TX73_019745 0.62 +0.1
4,310,599 + TX73_019745 0.66 +0.4
4,310,605 - TX73_019745 0.66 +0.3
4,310,633 - TX73_019745 0.69 +1.2
4,310,635 - TX73_019745 0.69 +1.2
4,310,644 + TX73_019745 0.70 +0.6
4,310,661 - TX73_019745 0.72 -0.2
4,310,691 - TX73_019745 0.75 +0.4
4,310,691 - TX73_019745 0.75 +0.5
4,310,700 - TX73_019745 0.76 +1.4
4,310,712 - TX73_019745 0.77 +0.9
4,310,722 - TX73_019745 0.78 +0.8
4,310,765 + TX73_019745 0.82 +0.3
4,310,816 + TX73_019745 0.87 +0.1
4,310,829 - TX73_019745 0.88 +0.2
4,310,831 + TX73_019745 0.89 +0.5
4,310,848 + +0.8
4,310,849 - +1.3
4,310,878 + +0.8
4,310,893 + -0.0
4,310,946 - -0.4
4,310,952 + +0.8
4,310,957 + +0.1
4,310,957 + +0.2
4,310,965 - +0.1
4,310,985 - -0.3
4,311,071 - +0.5
4,311,094 + +0.5
4,311,117 - -0.7
4,311,124 + -0.7
4,311,127 - +0.0
4,311,184 + TX73_019750 0.13 +0.6
4,311,192 - TX73_019750 0.14 +0.4
4,311,248 + TX73_019750 0.21 -0.1
4,311,253 + TX73_019750 0.22 +0.4
4,311,261 - TX73_019750 0.23 +0.4
4,311,283 + TX73_019750 0.26 +0.9
4,311,283 + TX73_019750 0.26 -0.6
4,311,287 - TX73_019750 0.26 +0.6
4,311,291 - TX73_019750 0.27 +0.2
4,311,336 - TX73_019750 0.33 -0.4
4,311,369 + TX73_019750 0.37 +0.3
4,311,401 + TX73_019750 0.41 -0.5
4,311,402 - TX73_019750 0.41 -0.1
4,311,402 - TX73_019750 0.41 +0.6
4,311,414 + TX73_019750 0.43 +0.5
4,311,553 - TX73_019750 0.61 +0.3
4,311,553 - TX73_019750 0.61 +0.3
4,311,555 + TX73_019750 0.61 -0.4
4,311,562 - TX73_019750 0.62 +0.7
4,311,562 - TX73_019750 0.62 -0.3
4,311,562 - TX73_019750 0.62 -0.8
4,311,568 - TX73_019750 0.63 +0.3
4,311,588 + TX73_019750 0.65 -1.4
4,311,628 + TX73_019750 0.70 -0.9
4,311,629 - TX73_019750 0.71 -0.7
4,311,666 - TX73_019750 0.75 +0.0
4,311,692 + TX73_019750 0.79 -0.3
4,311,700 + TX73_019750 0.80 +0.1
4,311,806 + +0.1
4,311,806 + -0.1
4,311,806 + -3.6
4,311,814 - -1.1
4,311,814 - +0.2
4,311,814 - -0.0
4,311,814 - +0.5
4,311,815 + +1.1
4,311,820 + -0.1
4,311,823 - +0.2
4,311,874 - +0.0
4,311,876 - +0.7
4,311,884 - +0.2
4,311,888 + +0.2
4,311,918 - -0.6
4,312,002 + -0.2
4,312,002 + +0.1
4,312,025 + +0.2
4,312,030 + -1.1
4,312,032 - -0.5
4,312,052 - +1.0
4,312,090 + -0.2
4,312,100 + -0.3
4,312,108 - -0.0
4,312,109 - -0.5
4,312,120 - -1.3
4,312,120 - -2.3
4,312,127 - -0.6
4,312,127 - +0.6
4,312,817 + +0.6
4,312,817 + -0.4
4,312,817 + +0.6
4,312,843 + +1.3
4,312,848 + -0.7
4,312,851 - -0.4

Or see this region's nucleotide sequence