Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002935

Experiment: Benzoate (C), sodium fluoride stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002930 and TX73_002935 are separated by 128 nucleotidesTX73_002935 and TX73_002940 are separated by 76 nucleotides TX73_002930: TX73_002930 - PHB depolymerase family esterase, at 627,896 to 629,083 _002930 TX73_002935: TX73_002935 - DUF1236 domain-containing protein, at 629,212 to 629,631 _002935 TX73_002940: TX73_002940 - AraC family transcriptional regulator, at 629,708 to 630,685 _002940 Position (kb) 629 630Strain fitness (log2 ratio) -2 -1 0 1 2at 628.215 kb on + strand, within TX73_002930at 628.220 kb on + strand, within TX73_002930at 628.235 kb on + strand, within TX73_002930at 628.238 kb on - strand, within TX73_002930at 628.243 kb on - strand, within TX73_002930at 628.255 kb on + strand, within TX73_002930at 628.255 kb on + strand, within TX73_002930at 628.279 kb on - strand, within TX73_002930at 628.299 kb on + strand, within TX73_002930at 628.304 kb on + strand, within TX73_002930at 628.312 kb on - strand, within TX73_002930at 628.312 kb on - strand, within TX73_002930at 628.312 kb on - strand, within TX73_002930at 628.319 kb on + strand, within TX73_002930at 628.362 kb on + strand, within TX73_002930at 628.362 kb on + strand, within TX73_002930at 628.380 kb on - strand, within TX73_002930at 628.380 kb on - strand, within TX73_002930at 628.383 kb on + strand, within TX73_002930at 628.391 kb on - strand, within TX73_002930at 628.391 kb on - strand, within TX73_002930at 628.403 kb on + strand, within TX73_002930at 628.409 kb on - strand, within TX73_002930at 628.423 kb on + strand, within TX73_002930at 628.423 kb on + strand, within TX73_002930at 628.423 kb on + strand, within TX73_002930at 628.431 kb on - strand, within TX73_002930at 628.431 kb on - strand, within TX73_002930at 628.431 kb on - strand, within TX73_002930at 628.431 kb on - strand, within TX73_002930at 628.431 kb on - strand, within TX73_002930at 628.431 kb on - strand, within TX73_002930at 628.431 kb on - strand, within TX73_002930at 628.431 kb on - strand, within TX73_002930at 628.431 kb on - strand, within TX73_002930at 628.431 kb on - strand, within TX73_002930at 628.437 kb on + strand, within TX73_002930at 628.453 kb on - strand, within TX73_002930at 628.468 kb on + strand, within TX73_002930at 628.471 kb on - strand, within TX73_002930at 628.490 kb on + strand, within TX73_002930at 628.491 kb on - strand, within TX73_002930at 628.496 kb on + strand, within TX73_002930at 628.496 kb on - strand, within TX73_002930at 628.498 kb on - strand, within TX73_002930at 628.498 kb on - strand, within TX73_002930at 628.518 kb on + strand, within TX73_002930at 628.521 kb on - strand, within TX73_002930at 628.524 kb on - strand, within TX73_002930at 628.529 kb on + strand, within TX73_002930at 628.536 kb on - strand, within TX73_002930at 628.538 kb on - strand, within TX73_002930at 628.618 kb on - strand, within TX73_002930at 628.626 kb on + strand, within TX73_002930at 628.628 kb on - strand, within TX73_002930at 628.638 kb on + strand, within TX73_002930at 628.666 kb on + strand, within TX73_002930at 628.682 kb on + strand, within TX73_002930at 628.715 kb on - strand, within TX73_002930at 628.721 kb on - strand, within TX73_002930at 628.723 kb on + strand, within TX73_002930at 628.731 kb on - strand, within TX73_002930at 628.731 kb on - strand, within TX73_002930at 628.731 kb on - strand, within TX73_002930at 628.733 kb on + strand, within TX73_002930at 628.741 kb on - strand, within TX73_002930at 628.772 kb on - strand, within TX73_002930at 628.772 kb on - strand, within TX73_002930at 628.783 kb on + strand, within TX73_002930at 628.808 kb on - strand, within TX73_002930at 628.812 kb on - strand, within TX73_002930at 628.818 kb on - strand, within TX73_002930at 628.826 kb on + strand, within TX73_002930at 628.851 kb on + strand, within TX73_002930at 628.851 kb on + strand, within TX73_002930at 628.874 kb on - strand, within TX73_002930at 628.897 kb on - strand, within TX73_002930at 628.987 kb on + strandat 629.025 kb on + strandat 629.042 kb on + strandat 629.044 kb on + strandat 629.044 kb on + strandat 629.044 kb on + strandat 629.049 kb on + strandat 629.050 kb on - strandat 629.052 kb on - strandat 629.052 kb on - strandat 629.052 kb on - strandat 629.072 kb on - strandat 629.082 kb on - strandat 629.106 kb on - strandat 629.106 kb on - strandat 629.108 kb on + strandat 629.108 kb on + strandat 629.111 kb on - strandat 629.116 kb on - strandat 629.116 kb on - strandat 629.164 kb on + strandat 629.164 kb on + strandat 629.164 kb on + strandat 629.172 kb on - strandat 629.172 kb on - strandat 629.172 kb on - strandat 629.172 kb on - strandat 629.178 kb on + strandat 629.187 kb on + strandat 629.277 kb on + strand, within TX73_002935at 629.284 kb on + strand, within TX73_002935at 629.284 kb on + strand, within TX73_002935at 629.285 kb on - strand, within TX73_002935at 629.285 kb on - strand, within TX73_002935at 629.292 kb on - strand, within TX73_002935at 629.292 kb on - strand, within TX73_002935at 629.293 kb on - strand, within TX73_002935at 629.296 kb on + strand, within TX73_002935at 629.298 kb on + strand, within TX73_002935at 629.309 kb on + strand, within TX73_002935at 629.343 kb on - strand, within TX73_002935at 629.343 kb on - strand, within TX73_002935at 629.372 kb on - strand, within TX73_002935at 629.404 kb on + strand, within TX73_002935at 629.412 kb on - strand, within TX73_002935at 629.412 kb on - strand, within TX73_002935at 629.435 kb on + strand, within TX73_002935at 629.445 kb on + strand, within TX73_002935at 629.489 kb on - strand, within TX73_002935at 629.506 kb on + strand, within TX73_002935at 629.524 kb on - strand, within TX73_002935at 629.532 kb on - strand, within TX73_002935at 629.532 kb on - strand, within TX73_002935at 629.532 kb on - strand, within TX73_002935at 629.559 kb on - strand, within TX73_002935at 629.564 kb on - strand, within TX73_002935at 629.574 kb on + strand, within TX73_002935at 629.582 kb on - strand, within TX73_002935at 629.592 kb on - strandat 629.604 kb on + strandat 629.611 kb on - strandat 629.614 kb on + strandat 629.660 kb on + strandat 629.706 kb on + strandat 629.706 kb on + strandat 629.706 kb on + strandat 629.714 kb on - strandat 629.714 kb on - strandat 629.714 kb on - strandat 629.714 kb on - strandat 629.714 kb on - strandat 629.714 kb on - strandat 629.745 kb on + strandat 629.796 kb on + strandat 629.796 kb on + strandat 629.801 kb on + strandat 629.804 kb on - strandat 629.806 kb on + strand, within TX73_002940at 629.806 kb on + strand, within TX73_002940at 629.826 kb on - strand, within TX73_002940at 629.851 kb on + strand, within TX73_002940at 629.851 kb on + strand, within TX73_002940at 629.859 kb on - strand, within TX73_002940at 629.859 kb on - strand, within TX73_002940at 629.859 kb on - strand, within TX73_002940at 629.922 kb on + strand, within TX73_002940at 629.922 kb on + strand, within TX73_002940at 629.930 kb on - strand, within TX73_002940at 629.930 kb on - strand, within TX73_002940at 629.935 kb on + strand, within TX73_002940at 629.943 kb on - strand, within TX73_002940at 629.946 kb on + strand, within TX73_002940at 629.968 kb on + strand, within TX73_002940at 629.992 kb on + strand, within TX73_002940at 630.031 kb on - strand, within TX73_002940at 630.036 kb on - strand, within TX73_002940at 630.069 kb on + strand, within TX73_002940at 630.087 kb on + strand, within TX73_002940at 630.095 kb on + strand, within TX73_002940at 630.095 kb on - strand, within TX73_002940at 630.126 kb on + strand, within TX73_002940at 630.126 kb on + strand, within TX73_002940at 630.130 kb on + strand, within TX73_002940at 630.135 kb on + strand, within TX73_002940at 630.135 kb on + strand, within TX73_002940at 630.211 kb on - strand, within TX73_002940at 630.215 kb on + strand, within TX73_002940at 630.254 kb on - strand, within TX73_002940at 630.260 kb on + strand, within TX73_002940at 630.261 kb on - strand, within TX73_002940at 630.261 kb on - strand, within TX73_002940at 630.263 kb on + strand, within TX73_002940at 630.265 kb on + strand, within TX73_002940at 630.277 kb on + strand, within TX73_002940at 630.285 kb on - strand, within TX73_002940at 630.289 kb on + strand, within TX73_002940at 630.289 kb on + strand, within TX73_002940at 630.320 kb on + strand, within TX73_002940at 630.321 kb on - strand, within TX73_002940at 630.329 kb on - strand, within TX73_002940at 630.329 kb on - strand, within TX73_002940at 630.329 kb on - strand, within TX73_002940at 630.329 kb on - strand, within TX73_002940at 630.336 kb on + strand, within TX73_002940at 630.379 kb on + strand, within TX73_002940at 630.379 kb on + strand, within TX73_002940at 630.379 kb on + strand, within TX73_002940at 630.392 kb on - strand, within TX73_002940at 630.413 kb on - strand, within TX73_002940at 630.425 kb on - strand, within TX73_002940at 630.425 kb on - strand, within TX73_002940at 630.441 kb on + strand, within TX73_002940at 630.448 kb on + strand, within TX73_002940at 630.448 kb on + strand, within TX73_002940at 630.448 kb on + strand, within TX73_002940at 630.449 kb on - strand, within TX73_002940at 630.464 kb on - strand, within TX73_002940at 630.470 kb on - strand, within TX73_002940at 630.499 kb on + strand, within TX73_002940at 630.499 kb on + strand, within TX73_002940at 630.507 kb on - strand, within TX73_002940at 630.509 kb on - strand, within TX73_002940at 630.519 kb on - strand, within TX73_002940at 630.570 kb on + strand, within TX73_002940at 630.571 kb on - strand, within TX73_002940at 630.578 kb on - strand, within TX73_002940at 630.588 kb on - strandat 630.599 kb on + strandat 630.599 kb on + strandat 630.599 kb on + strandat 630.607 kb on - strandat 630.607 kb on - strandat 630.607 kb on - strandat 630.607 kb on - strandat 630.607 kb on - strandat 630.607 kb on - strandat 630.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzoate (C), sodium fluoride stress
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628,215 + TX73_002930 0.27 -0.1
628,220 + TX73_002930 0.27 -0.4
628,235 + TX73_002930 0.29 +0.7
628,238 - TX73_002930 0.29 +0.1
628,243 - TX73_002930 0.29 -0.6
628,255 + TX73_002930 0.30 -0.1
628,255 + TX73_002930 0.30 +0.4
628,279 - TX73_002930 0.32 +0.3
628,299 + TX73_002930 0.34 -0.9
628,304 + TX73_002930 0.34 +0.9
628,312 - TX73_002930 0.35 -0.4
628,312 - TX73_002930 0.35 +0.8
628,312 - TX73_002930 0.35 +0.2
628,319 + TX73_002930 0.36 +0.0
628,362 + TX73_002930 0.39 +0.9
628,362 + TX73_002930 0.39 +0.1
628,380 - TX73_002930 0.41 +0.3
628,380 - TX73_002930 0.41 +0.5
628,383 + TX73_002930 0.41 -0.7
628,391 - TX73_002930 0.42 +0.1
628,391 - TX73_002930 0.42 +0.0
628,403 + TX73_002930 0.43 -0.2
628,409 - TX73_002930 0.43 +0.1
628,423 + TX73_002930 0.44 -0.5
628,423 + TX73_002930 0.44 -0.4
628,423 + TX73_002930 0.44 -0.2
628,431 - TX73_002930 0.45 -0.9
628,431 - TX73_002930 0.45 -0.1
628,431 - TX73_002930 0.45 +0.1
628,431 - TX73_002930 0.45 -0.0
628,431 - TX73_002930 0.45 -0.1
628,431 - TX73_002930 0.45 -0.6
628,431 - TX73_002930 0.45 -0.4
628,431 - TX73_002930 0.45 -0.8
628,431 - TX73_002930 0.45 +0.1
628,431 - TX73_002930 0.45 -0.2
628,437 + TX73_002930 0.46 +0.6
628,453 - TX73_002930 0.47 +0.5
628,468 + TX73_002930 0.48 +0.1
628,471 - TX73_002930 0.48 -1.0
628,490 + TX73_002930 0.50 +0.1
628,491 - TX73_002930 0.50 +0.2
628,496 + TX73_002930 0.51 -0.4
628,496 - TX73_002930 0.51 +0.1
628,498 - TX73_002930 0.51 +0.9
628,498 - TX73_002930 0.51 +0.0
628,518 + TX73_002930 0.52 -0.4
628,521 - TX73_002930 0.53 +0.3
628,524 - TX73_002930 0.53 -0.3
628,529 + TX73_002930 0.53 +0.2
628,536 - TX73_002930 0.54 -0.2
628,538 - TX73_002930 0.54 +1.5
628,618 - TX73_002930 0.61 -0.1
628,626 + TX73_002930 0.61 +0.4
628,628 - TX73_002930 0.62 -0.3
628,638 + TX73_002930 0.62 +0.2
628,666 + TX73_002930 0.65 -1.3
628,682 + TX73_002930 0.66 -1.7
628,715 - TX73_002930 0.69 +1.7
628,721 - TX73_002930 0.69 +0.3
628,723 + TX73_002930 0.70 -1.1
628,731 - TX73_002930 0.70 -0.1
628,731 - TX73_002930 0.70 -0.1
628,731 - TX73_002930 0.70 -0.1
628,733 + TX73_002930 0.70 -0.3
628,741 - TX73_002930 0.71 +0.1
628,772 - TX73_002930 0.74 +0.1
628,772 - TX73_002930 0.74 -0.6
628,783 + TX73_002930 0.75 +0.0
628,808 - TX73_002930 0.77 -0.2
628,812 - TX73_002930 0.77 +0.1
628,818 - TX73_002930 0.78 +0.7
628,826 + TX73_002930 0.78 -0.7
628,851 + TX73_002930 0.80 -0.2
628,851 + TX73_002930 0.80 +0.2
628,874 - TX73_002930 0.82 +0.3
628,897 - TX73_002930 0.84 -0.1
628,987 + +0.1
629,025 + -0.1
629,042 + -0.0
629,044 + +0.5
629,044 + -0.3
629,044 + +0.1
629,049 + -0.5
629,050 - -0.7
629,052 - -1.6
629,052 - +0.0
629,052 - +0.1
629,072 - +0.1
629,082 - -0.4
629,106 - -0.1
629,106 - +1.3
629,108 + +0.2
629,108 + +0.2
629,111 - +0.0
629,116 - +0.0
629,116 - +0.9
629,164 + -0.7
629,164 + +0.5
629,164 + +0.7
629,172 - -0.9
629,172 - -0.5
629,172 - +0.1
629,172 - -0.1
629,178 + +0.6
629,187 + -0.2
629,277 + TX73_002935 0.15 +0.3
629,284 + TX73_002935 0.17 +0.1
629,284 + TX73_002935 0.17 -0.1
629,285 - TX73_002935 0.17 +0.0
629,285 - TX73_002935 0.17 -0.1
629,292 - TX73_002935 0.19 -0.2
629,292 - TX73_002935 0.19 -0.1
629,293 - TX73_002935 0.19 +0.3
629,296 + TX73_002935 0.20 +0.4
629,298 + TX73_002935 0.20 +0.4
629,309 + TX73_002935 0.23 +0.5
629,343 - TX73_002935 0.31 +0.7
629,343 - TX73_002935 0.31 -0.2
629,372 - TX73_002935 0.38 +0.3
629,404 + TX73_002935 0.46 +0.6
629,412 - TX73_002935 0.48 +0.8
629,412 - TX73_002935 0.48 -1.4
629,435 + TX73_002935 0.53 -0.1
629,445 + TX73_002935 0.55 +0.0
629,489 - TX73_002935 0.66 -0.1
629,506 + TX73_002935 0.70 -0.1
629,524 - TX73_002935 0.74 +0.3
629,532 - TX73_002935 0.76 -0.0
629,532 - TX73_002935 0.76 +0.2
629,532 - TX73_002935 0.76 +0.9
629,559 - TX73_002935 0.83 +0.1
629,564 - TX73_002935 0.84 +0.6
629,574 + TX73_002935 0.86 +0.2
629,582 - TX73_002935 0.88 +0.6
629,592 - +0.2
629,604 + -0.5
629,611 - -0.0
629,614 + +0.6
629,660 + +0.1
629,706 + +0.4
629,706 + -0.4
629,706 + +0.1
629,714 - -0.1
629,714 - +0.1
629,714 - +0.1
629,714 - +0.6
629,714 - +0.6
629,714 - +0.3
629,745 + -0.3
629,796 + +0.3
629,796 + +0.1
629,801 + -0.0
629,804 - +0.7
629,806 + TX73_002940 0.10 +0.5
629,806 + TX73_002940 0.10 +0.5
629,826 - TX73_002940 0.12 +0.1
629,851 + TX73_002940 0.15 +1.0
629,851 + TX73_002940 0.15 -0.3
629,859 - TX73_002940 0.15 +0.0
629,859 - TX73_002940 0.15 +0.5
629,859 - TX73_002940 0.15 +0.2
629,922 + TX73_002940 0.22 -0.3
629,922 + TX73_002940 0.22 +0.4
629,930 - TX73_002940 0.23 +0.6
629,930 - TX73_002940 0.23 -0.6
629,935 + TX73_002940 0.23 +0.8
629,943 - TX73_002940 0.24 +2.3
629,946 + TX73_002940 0.24 -0.2
629,968 + TX73_002940 0.27 +0.8
629,992 + TX73_002940 0.29 -0.5
630,031 - TX73_002940 0.33 -0.0
630,036 - TX73_002940 0.34 -0.7
630,069 + TX73_002940 0.37 -0.4
630,087 + TX73_002940 0.39 -0.3
630,095 + TX73_002940 0.40 -0.6
630,095 - TX73_002940 0.40 +0.0
630,126 + TX73_002940 0.43 +0.2
630,126 + TX73_002940 0.43 +1.0
630,130 + TX73_002940 0.43 +0.3
630,135 + TX73_002940 0.44 +0.6
630,135 + TX73_002940 0.44 +0.1
630,211 - TX73_002940 0.51 +0.1
630,215 + TX73_002940 0.52 +0.3
630,254 - TX73_002940 0.56 +0.2
630,260 + TX73_002940 0.56 -0.4
630,261 - TX73_002940 0.57 -0.8
630,261 - TX73_002940 0.57 -0.2
630,263 + TX73_002940 0.57 +0.8
630,265 + TX73_002940 0.57 +0.3
630,277 + TX73_002940 0.58 -0.6
630,285 - TX73_002940 0.59 -0.2
630,289 + TX73_002940 0.59 +0.8
630,289 + TX73_002940 0.59 +0.5
630,320 + TX73_002940 0.63 -0.6
630,321 - TX73_002940 0.63 -0.1
630,329 - TX73_002940 0.63 -0.0
630,329 - TX73_002940 0.63 -1.1
630,329 - TX73_002940 0.63 -0.8
630,329 - TX73_002940 0.63 -0.1
630,336 + TX73_002940 0.64 -0.8
630,379 + TX73_002940 0.69 -0.5
630,379 + TX73_002940 0.69 -0.5
630,379 + TX73_002940 0.69 +0.5
630,392 - TX73_002940 0.70 -1.8
630,413 - TX73_002940 0.72 -0.7
630,425 - TX73_002940 0.73 -0.5
630,425 - TX73_002940 0.73 +0.4
630,441 + TX73_002940 0.75 -0.4
630,448 + TX73_002940 0.76 +0.2
630,448 + TX73_002940 0.76 +1.2
630,448 + TX73_002940 0.76 -1.0
630,449 - TX73_002940 0.76 -0.1
630,464 - TX73_002940 0.77 -1.0
630,470 - TX73_002940 0.78 +0.3
630,499 + TX73_002940 0.81 +0.5
630,499 + TX73_002940 0.81 -0.1
630,507 - TX73_002940 0.82 +0.0
630,509 - TX73_002940 0.82 +0.1
630,519 - TX73_002940 0.83 +0.3
630,570 + TX73_002940 0.88 +0.4
630,571 - TX73_002940 0.88 +0.2
630,578 - TX73_002940 0.89 -0.1
630,588 - +1.2
630,599 + +0.4
630,599 + -1.1
630,599 + +0.3
630,607 - +0.2
630,607 - +0.2
630,607 - +0.3
630,607 - +0.3
630,607 - -0.2
630,607 - -0.2
630,618 - -0.2

Or see this region's nucleotide sequence