Experiment: Benzoate (C), sodium fluoride stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002795 and TX73_002800 are separated by 215 nucleotides TX73_002800 and TX73_002805 are separated by 170 nucleotides TX73_002805 and TX73_002810 are separated by 2 nucleotides
TX73_002795: TX73_002795 - hypothetical protein, at 603,266 to 604,384
_002795
TX73_002800: TX73_002800 - tRNA-Leu, at 604,600 to 604,684
_002800
TX73_002805: TX73_002805 - disulfide bond formation protein B, at 604,855 to 605,403
_002805
TX73_002810: TX73_002810 - AbrB family transcriptional regulator, at 605,406 to 606,458
_002810
Position (kb) 604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 603.865 kb on + strand, within TX73_002795 at 603.886 kb on + strand, within TX73_002795 at 603.886 kb on + strand, within TX73_002795 at 603.886 kb on + strand, within TX73_002795 at 603.888 kb on + strand, within TX73_002795 at 603.888 kb on + strand, within TX73_002795 at 603.894 kb on - strand, within TX73_002795 at 603.896 kb on + strand, within TX73_002795 at 603.896 kb on + strand, within TX73_002795 at 603.904 kb on - strand, within TX73_002795 at 603.927 kb on + strand, within TX73_002795 at 603.936 kb on + strand, within TX73_002795 at 603.949 kb on - strand, within TX73_002795 at 603.968 kb on + strand, within TX73_002795 at 603.969 kb on + strand, within TX73_002795 at 603.969 kb on + strand, within TX73_002795 at 603.972 kb on - strand, within TX73_002795 at 603.972 kb on - strand, within TX73_002795 at 604.007 kb on - strand, within TX73_002795 at 604.052 kb on - strand, within TX73_002795 at 604.057 kb on + strand, within TX73_002795 at 604.074 kb on - strand, within TX73_002795 at 604.076 kb on + strand, within TX73_002795 at 604.084 kb on - strand, within TX73_002795 at 604.159 kb on + strand, within TX73_002795 at 604.168 kb on - strand, within TX73_002795 at 604.170 kb on - strand, within TX73_002795 at 604.172 kb on + strand, within TX73_002795 at 604.177 kb on + strand, within TX73_002795 at 604.195 kb on + strand, within TX73_002795 at 604.195 kb on - strand, within TX73_002795 at 604.197 kb on + strand, within TX73_002795 at 604.205 kb on - strand, within TX73_002795 at 604.235 kb on + strand, within TX73_002795 at 604.235 kb on + strand, within TX73_002795 at 604.248 kb on - strand, within TX73_002795 at 604.275 kb on + strand at 604.275 kb on + strand at 604.305 kb on - strand at 604.337 kb on - strand at 604.339 kb on + strand at 604.339 kb on + strand at 604.347 kb on - strand at 604.356 kb on - strand at 604.361 kb on - strand at 604.368 kb on + strand at 604.383 kb on - strand at 604.386 kb on + strand at 604.395 kb on - strand at 604.501 kb on - strand at 604.501 kb on - strand at 604.515 kb on + strand at 604.515 kb on + strand at 604.515 kb on + strand at 604.515 kb on + strand at 604.523 kb on - strand at 604.525 kb on - strand at 604.528 kb on - strand at 604.533 kb on - strand at 604.588 kb on - strand at 604.721 kb on + strand at 604.721 kb on + strand at 604.721 kb on + strand at 604.721 kb on + strand at 604.721 kb on + strand at 604.721 kb on + strand at 604.721 kb on + strand at 604.729 kb on - strand at 604.729 kb on - strand at 604.729 kb on - strand at 604.744 kb on + strand at 604.745 kb on + strand at 604.752 kb on - strand at 604.760 kb on + strand at 604.768 kb on + strand at 604.768 kb on + strand at 604.770 kb on + strand at 604.770 kb on + strand at 604.776 kb on - strand at 604.776 kb on - strand at 604.776 kb on - strand at 604.778 kb on + strand at 604.782 kb on + strand at 604.782 kb on + strand at 604.792 kb on + strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.802 kb on + strand at 604.821 kb on + strand at 604.821 kb on + strand at 604.829 kb on - strand at 604.829 kb on - strand at 604.852 kb on + strand at 604.854 kb on + strand at 604.859 kb on + strand at 604.876 kb on + strand at 604.888 kb on - strand at 604.890 kb on + strand at 604.898 kb on - strand at 604.925 kb on + strand, within TX73_002805 at 604.932 kb on - strand, within TX73_002805 at 604.938 kb on - strand, within TX73_002805 at 605.390 kb on - strand at 605.390 kb on - strand at 605.397 kb on + strand at 605.397 kb on + strand at 605.405 kb on - strand at 605.409 kb on + strand at 605.409 kb on + strand at 605.409 kb on + strand at 605.432 kb on + strand at 605.432 kb on + strand at 605.440 kb on - strand at 605.464 kb on + strand at 605.520 kb on + strand, within TX73_002810 at 605.520 kb on - strand, within TX73_002810 at 605.527 kb on - strand, within TX73_002810 at 605.535 kb on - strand, within TX73_002810 at 605.576 kb on + strand, within TX73_002810 at 605.604 kb on + strand, within TX73_002810 at 605.607 kb on - strand, within TX73_002810 at 605.617 kb on - strand, within TX73_002810 at 605.677 kb on + strand, within TX73_002810 at 605.682 kb on + strand, within TX73_002810 at 605.697 kb on + strand, within TX73_002810 at 605.707 kb on + strand, within TX73_002810 at 605.745 kb on - strand, within TX73_002810 at 605.756 kb on + strand, within TX73_002810 at 605.764 kb on - strand, within TX73_002810 at 605.772 kb on - strand, within TX73_002810 at 605.779 kb on + strand, within TX73_002810 at 605.799 kb on + strand, within TX73_002810 at 605.807 kb on - strand, within TX73_002810 at 605.807 kb on - strand, within TX73_002810 at 605.807 kb on - strand, within TX73_002810 at 605.807 kb on - strand, within TX73_002810 at 605.827 kb on - strand, within TX73_002810 at 605.862 kb on + strand, within TX73_002810 at 605.892 kb on + strand, within TX73_002810 at 605.900 kb on - strand, within TX73_002810 at 605.900 kb on - strand, within TX73_002810 at 605.921 kb on + strand, within TX73_002810 at 605.967 kb on - strand, within TX73_002810 at 605.989 kb on + strand, within TX73_002810 at 605.992 kb on - strand, within TX73_002810 at 605.994 kb on + strand, within TX73_002810 at 605.994 kb on + strand, within TX73_002810 at 605.994 kb on + strand, within TX73_002810 at 605.997 kb on - strand, within TX73_002810 at 605.999 kb on + strand, within TX73_002810 at 606.002 kb on - strand, within TX73_002810 at 606.002 kb on - strand, within TX73_002810 at 606.002 kb on - strand, within TX73_002810 at 606.002 kb on - strand, within TX73_002810 at 606.002 kb on - strand, within TX73_002810 at 606.002 kb on - strand, within TX73_002810 at 606.002 kb on - strand, within TX73_002810 at 606.015 kb on + strand, within TX73_002810 at 606.058 kb on + strand, within TX73_002810 at 606.065 kb on + strand, within TX73_002810 at 606.073 kb on - strand, within TX73_002810 at 606.073 kb on - strand, within TX73_002810 at 606.123 kb on - strand, within TX73_002810 at 606.148 kb on - strand, within TX73_002810 at 606.156 kb on + strand, within TX73_002810 at 606.164 kb on - strand, within TX73_002810 at 606.164 kb on - strand, within TX73_002810 at 606.164 kb on - strand, within TX73_002810 at 606.164 kb on - strand, within TX73_002810 at 606.166 kb on + strand, within TX73_002810 at 606.169 kb on - strand, within TX73_002810 at 606.181 kb on + strand, within TX73_002810 at 606.199 kb on - strand, within TX73_002810 at 606.213 kb on - strand, within TX73_002810 at 606.225 kb on - strand, within TX73_002810 at 606.235 kb on + strand, within TX73_002810 at 606.236 kb on - strand, within TX73_002810 at 606.242 kb on + strand, within TX73_002810 at 606.242 kb on + strand, within TX73_002810 at 606.252 kb on - strand, within TX73_002810 at 606.261 kb on + strand, within TX73_002810 at 606.352 kb on + strand, within TX73_002810 at 606.352 kb on + strand, within TX73_002810 at 606.369 kb on + strand at 606.372 kb on + strand at 606.374 kb on + strand at 606.377 kb on + strand at 606.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzoate (C), sodium fluoride stress remove 603,865 + TX73_002795 0.54 +0.5 603,886 + TX73_002795 0.55 -1.1 603,886 + TX73_002795 0.55 +0.6 603,886 + TX73_002795 0.55 -0.7 603,888 + TX73_002795 0.56 +0.7 603,888 + TX73_002795 0.56 -0.0 603,894 - TX73_002795 0.56 -0.2 603,896 + TX73_002795 0.56 -0.2 603,896 + TX73_002795 0.56 +0.4 603,904 - TX73_002795 0.57 -0.4 603,927 + TX73_002795 0.59 -0.4 603,936 + TX73_002795 0.60 +0.8 603,949 - TX73_002795 0.61 +0.2 603,968 + TX73_002795 0.63 +0.0 603,969 + TX73_002795 0.63 -0.8 603,969 + TX73_002795 0.63 -0.1 603,972 - TX73_002795 0.63 -0.1 603,972 - TX73_002795 0.63 -0.3 604,007 - TX73_002795 0.66 -0.4 604,052 - TX73_002795 0.70 +0.6 604,057 + TX73_002795 0.71 -0.3 604,074 - TX73_002795 0.72 +0.4 604,076 + TX73_002795 0.72 -0.0 604,084 - TX73_002795 0.73 +0.9 604,159 + TX73_002795 0.80 -0.6 604,168 - TX73_002795 0.81 -0.1 604,170 - TX73_002795 0.81 -0.5 604,172 + TX73_002795 0.81 -0.4 604,177 + TX73_002795 0.81 -0.1 604,195 + TX73_002795 0.83 -0.0 604,195 - TX73_002795 0.83 -0.1 604,197 + TX73_002795 0.83 -1.4 604,205 - TX73_002795 0.84 -0.6 604,235 + TX73_002795 0.87 +0.0 604,235 + TX73_002795 0.87 -0.4 604,248 - TX73_002795 0.88 +0.0 604,275 + -0.1 604,275 + +0.5 604,305 - +0.1 604,337 - -0.2 604,339 + -0.1 604,339 + +0.1 604,347 - -0.0 604,356 - -0.7 604,361 - -0.1 604,368 + +0.3 604,383 - -0.6 604,386 + -0.5 604,395 - -0.2 604,501 - +0.4 604,501 - -0.7 604,515 + -0.1 604,515 + +0.2 604,515 + +0.5 604,515 + +0.2 604,523 - -0.7 604,525 - -0.5 604,528 - -1.0 604,533 - +0.0 604,588 - -0.8 604,721 + -1.4 604,721 + -1.2 604,721 + -0.1 604,721 + -0.7 604,721 + -0.3 604,721 + -0.1 604,721 + -0.3 604,729 - -0.6 604,729 - -1.1 604,729 - -0.4 604,744 + -0.2 604,745 + -0.4 604,752 - -0.5 604,760 + +0.0 604,768 + -0.1 604,768 + -0.3 604,770 + +0.1 604,770 + -0.1 604,776 - -0.0 604,776 - -0.9 604,776 - +0.0 604,778 + +1.0 604,782 + +2.3 604,782 + -0.5 604,792 + -0.1 604,797 + +0.3 604,797 + -0.0 604,802 + +0.1 604,821 + +1.0 604,821 + -0.5 604,829 - +0.5 604,829 - -0.9 604,852 + -0.3 604,854 + +0.6 604,859 + +0.3 604,876 + +0.7 604,888 - +0.8 604,890 + -0.8 604,898 - -0.3 604,925 + TX73_002805 0.13 -0.0 604,932 - TX73_002805 0.14 -0.7 604,938 - TX73_002805 0.15 -1.7 605,390 - +0.0 605,390 - -0.4 605,397 + +0.2 605,397 + -0.1 605,405 - -1.1 605,409 + -0.6 605,409 + -0.1 605,409 + -0.2 605,432 + -0.3 605,432 + -0.1 605,440 - -0.3 605,464 + +0.3 605,520 + TX73_002810 0.11 -0.4 605,520 - TX73_002810 0.11 -0.2 605,527 - TX73_002810 0.11 +0.4 605,535 - TX73_002810 0.12 +0.2 605,576 + TX73_002810 0.16 -0.1 605,604 + TX73_002810 0.19 +0.1 605,607 - TX73_002810 0.19 -1.3 605,617 - TX73_002810 0.20 -0.5 605,677 + TX73_002810 0.26 +0.7 605,682 + TX73_002810 0.26 +0.6 605,697 + TX73_002810 0.28 +1.2 605,707 + TX73_002810 0.29 +0.4 605,745 - TX73_002810 0.32 -2.0 605,756 + TX73_002810 0.33 +0.2 605,764 - TX73_002810 0.34 -0.5 605,772 - TX73_002810 0.35 +3.1 605,779 + TX73_002810 0.35 -0.1 605,799 + TX73_002810 0.37 -0.1 605,807 - TX73_002810 0.38 +0.1 605,807 - TX73_002810 0.38 -0.2 605,807 - TX73_002810 0.38 -0.7 605,807 - TX73_002810 0.38 +0.0 605,827 - TX73_002810 0.40 +0.2 605,862 + TX73_002810 0.43 -0.2 605,892 + TX73_002810 0.46 -0.0 605,900 - TX73_002810 0.47 +0.3 605,900 - TX73_002810 0.47 +0.5 605,921 + TX73_002810 0.49 -1.1 605,967 - TX73_002810 0.53 +0.1 605,989 + TX73_002810 0.55 +0.1 605,992 - TX73_002810 0.56 +1.9 605,994 + TX73_002810 0.56 +0.2 605,994 + TX73_002810 0.56 -0.3 605,994 + TX73_002810 0.56 +0.2 605,997 - TX73_002810 0.56 +0.4 605,999 + TX73_002810 0.56 -0.5 606,002 - TX73_002810 0.57 +0.3 606,002 - TX73_002810 0.57 +0.2 606,002 - TX73_002810 0.57 -0.5 606,002 - TX73_002810 0.57 +0.5 606,002 - TX73_002810 0.57 -0.0 606,002 - TX73_002810 0.57 -0.6 606,002 - TX73_002810 0.57 +1.0 606,015 + TX73_002810 0.58 +0.6 606,058 + TX73_002810 0.62 +0.7 606,065 + TX73_002810 0.63 -0.1 606,073 - TX73_002810 0.63 +0.1 606,073 - TX73_002810 0.63 +0.2 606,123 - TX73_002810 0.68 +0.9 606,148 - TX73_002810 0.70 +0.4 606,156 + TX73_002810 0.71 -0.2 606,164 - TX73_002810 0.72 +1.0 606,164 - TX73_002810 0.72 +0.1 606,164 - TX73_002810 0.72 -1.0 606,164 - TX73_002810 0.72 -0.1 606,166 + TX73_002810 0.72 +0.4 606,169 - TX73_002810 0.72 -1.2 606,181 + TX73_002810 0.74 +0.0 606,199 - TX73_002810 0.75 -0.7 606,213 - TX73_002810 0.77 -0.5 606,225 - TX73_002810 0.78 -0.2 606,235 + TX73_002810 0.79 -0.6 606,236 - TX73_002810 0.79 -0.3 606,242 + TX73_002810 0.79 -0.4 606,242 + TX73_002810 0.79 -0.1 606,252 - TX73_002810 0.80 -0.5 606,261 + TX73_002810 0.81 +1.1 606,352 + TX73_002810 0.90 -0.8 606,352 + TX73_002810 0.90 +0.5 606,369 + -0.2 606,372 + +0.2 606,374 + -0.2 606,377 + -0.2 606,390 - +0.3
Or see this region's nucleotide sequence