Experiment: Benzoate (C), sodium fluoride stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002750 and TX73_002755 are separated by 182 nucleotides TX73_002755 and TX73_002760 are separated by 76 nucleotides TX73_002760 and TX73_002765 are separated by 19 nucleotides
TX73_002750: TX73_002750 - acetyl-CoA C-acetyltransferase, at 590,895 to 592,073
_002750
TX73_002755: TX73_002755 - beta-ketoacyl-ACP reductase, at 592,256 to 592,981
_002755
TX73_002760: TX73_002760 - EamA family transporter, at 593,058 to 593,924
_002760
TX73_002765: TX73_002765 - TIGR02281 family clan AA aspartic protease, at 593,944 to 594,465
_002765
Position (kb) 592
593 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 591.259 kb on - strand, within TX73_002750 at 591.319 kb on - strand, within TX73_002750 at 591.323 kb on + strand, within TX73_002750 at 591.323 kb on + strand, within TX73_002750 at 591.331 kb on - strand, within TX73_002750 at 591.331 kb on - strand, within TX73_002750 at 591.331 kb on - strand, within TX73_002750 at 591.342 kb on - strand, within TX73_002750 at 591.347 kb on + strand, within TX73_002750 at 591.353 kb on - strand, within TX73_002750 at 591.354 kb on + strand, within TX73_002750 at 591.355 kb on - strand, within TX73_002750 at 591.355 kb on - strand, within TX73_002750 at 591.373 kb on - strand, within TX73_002750 at 591.419 kb on + strand, within TX73_002750 at 591.444 kb on - strand, within TX73_002750 at 591.449 kb on + strand, within TX73_002750 at 591.449 kb on + strand, within TX73_002750 at 591.451 kb on - strand, within TX73_002750 at 591.484 kb on - strand, within TX73_002750 at 591.504 kb on + strand, within TX73_002750 at 591.520 kb on - strand, within TX73_002750 at 591.571 kb on + strand, within TX73_002750 at 591.584 kb on + strand, within TX73_002750 at 591.625 kb on + strand, within TX73_002750 at 591.660 kb on + strand, within TX73_002750 at 591.671 kb on - strand, within TX73_002750 at 591.710 kb on + strand, within TX73_002750 at 591.718 kb on - strand, within TX73_002750 at 591.718 kb on - strand, within TX73_002750 at 591.732 kb on - strand, within TX73_002750 at 591.742 kb on - strand, within TX73_002750 at 591.742 kb on - strand, within TX73_002750 at 591.742 kb on - strand, within TX73_002750 at 591.760 kb on + strand, within TX73_002750 at 591.765 kb on + strand, within TX73_002750 at 591.765 kb on + strand, within TX73_002750 at 591.765 kb on + strand, within TX73_002750 at 591.789 kb on + strand, within TX73_002750 at 591.794 kb on + strand, within TX73_002750 at 591.794 kb on + strand, within TX73_002750 at 591.797 kb on - strand, within TX73_002750 at 591.802 kb on - strand, within TX73_002750 at 591.802 kb on - strand, within TX73_002750 at 591.820 kb on + strand, within TX73_002750 at 591.820 kb on + strand, within TX73_002750 at 591.825 kb on + strand, within TX73_002750 at 591.828 kb on - strand, within TX73_002750 at 591.828 kb on - strand, within TX73_002750 at 591.848 kb on - strand, within TX73_002750 at 591.855 kb on + strand, within TX73_002750 at 591.860 kb on + strand, within TX73_002750 at 591.863 kb on - strand, within TX73_002750 at 591.863 kb on - strand, within TX73_002750 at 591.863 kb on - strand, within TX73_002750 at 591.868 kb on - strand, within TX73_002750 at 591.868 kb on - strand, within TX73_002750 at 591.868 kb on - strand, within TX73_002750 at 591.895 kb on + strand, within TX73_002750 at 591.903 kb on - strand, within TX73_002750 at 591.944 kb on - strand, within TX73_002750 at 591.946 kb on - strand, within TX73_002750 at 591.957 kb on - strand at 591.964 kb on + strand at 591.967 kb on + strand at 591.980 kb on + strand at 591.987 kb on + strand at 591.987 kb on + strand at 591.987 kb on + strand at 592.027 kb on + strand at 592.038 kb on + strand at 592.046 kb on - strand at 592.046 kb on - strand at 592.053 kb on - strand at 592.053 kb on - strand at 592.058 kb on - strand at 592.075 kb on - strand at 592.079 kb on + strand at 592.092 kb on + strand at 592.111 kb on + strand at 592.178 kb on + strand at 592.246 kb on + strand at 592.316 kb on + strand at 592.326 kb on - strand at 592.358 kb on + strand, within TX73_002755 at 592.363 kb on + strand, within TX73_002755 at 592.474 kb on - strand, within TX73_002755 at 592.549 kb on + strand, within TX73_002755 at 592.559 kb on - strand, within TX73_002755 at 592.590 kb on + strand, within TX73_002755 at 592.664 kb on + strand, within TX73_002755 at 592.681 kb on - strand, within TX73_002755 at 592.767 kb on + strand, within TX73_002755 at 592.795 kb on - strand, within TX73_002755 at 592.807 kb on + strand, within TX73_002755 at 592.813 kb on + strand, within TX73_002755 at 592.815 kb on - strand, within TX73_002755 at 592.834 kb on + strand, within TX73_002755 at 592.878 kb on + strand, within TX73_002755 at 592.888 kb on - strand, within TX73_002755 at 592.888 kb on - strand, within TX73_002755 at 592.904 kb on + strand, within TX73_002755 at 592.914 kb on - strand at 592.940 kb on + strand at 592.941 kb on - strand at 592.949 kb on - strand at 592.949 kb on - strand at 592.949 kb on - strand at 592.949 kb on - strand at 592.976 kb on + strand at 593.029 kb on + strand at 593.050 kb on - strand at 593.055 kb on + strand at 593.063 kb on - strand at 593.069 kb on - strand at 593.084 kb on - strand at 593.105 kb on - strand at 593.120 kb on + strand at 593.138 kb on - strand at 593.140 kb on + strand at 593.172 kb on + strand, within TX73_002760 at 593.174 kb on - strand, within TX73_002760 at 593.212 kb on - strand, within TX73_002760 at 593.227 kb on - strand, within TX73_002760 at 593.231 kb on - strand, within TX73_002760 at 593.240 kb on + strand, within TX73_002760 at 593.240 kb on + strand, within TX73_002760 at 593.246 kb on - strand, within TX73_002760 at 593.250 kb on + strand, within TX73_002760 at 593.255 kb on + strand, within TX73_002760 at 593.255 kb on + strand, within TX73_002760 at 593.258 kb on - strand, within TX73_002760 at 593.287 kb on + strand, within TX73_002760 at 593.311 kb on + strand, within TX73_002760 at 593.338 kb on - strand, within TX73_002760 at 593.390 kb on + strand, within TX73_002760 at 593.433 kb on + strand, within TX73_002760 at 593.449 kb on + strand, within TX73_002760 at 593.452 kb on + strand, within TX73_002760 at 593.454 kb on + strand, within TX73_002760 at 593.460 kb on - strand, within TX73_002760 at 593.460 kb on - strand, within TX73_002760 at 593.460 kb on - strand, within TX73_002760 at 593.462 kb on - strand, within TX73_002760 at 593.467 kb on - strand, within TX73_002760 at 593.467 kb on - strand, within TX73_002760 at 593.479 kb on - strand, within TX73_002760 at 593.479 kb on - strand, within TX73_002760 at 593.513 kb on - strand, within TX73_002760 at 593.529 kb on + strand, within TX73_002760 at 593.537 kb on - strand, within TX73_002760 at 593.567 kb on + strand, within TX73_002760 at 593.572 kb on + strand, within TX73_002760 at 593.572 kb on + strand, within TX73_002760 at 593.572 kb on + strand, within TX73_002760 at 593.572 kb on + strand, within TX73_002760 at 593.572 kb on + strand, within TX73_002760 at 593.575 kb on - strand, within TX73_002760 at 593.577 kb on + strand, within TX73_002760 at 593.585 kb on - strand, within TX73_002760 at 593.598 kb on + strand, within TX73_002760 at 593.600 kb on + strand, within TX73_002760 at 593.635 kb on + strand, within TX73_002760 at 593.678 kb on + strand, within TX73_002760 at 593.712 kb on - strand, within TX73_002760 at 593.727 kb on + strand, within TX73_002760 at 593.751 kb on - strand, within TX73_002760 at 593.753 kb on - strand, within TX73_002760 at 593.753 kb on - strand, within TX73_002760 at 593.801 kb on + strand, within TX73_002760 at 593.809 kb on - strand, within TX73_002760 at 593.848 kb on - strand at 593.870 kb on + strand at 593.896 kb on + strand at 593.896 kb on + strand at 593.896 kb on + strand at 593.898 kb on + strand at 593.903 kb on + strand at 593.904 kb on - strand at 593.911 kb on - strand at 593.917 kb on - strand at 593.941 kb on + strand at 593.941 kb on + strand at 593.957 kb on - strand at 593.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzoate (C), sodium fluoride stress remove 591,259 - TX73_002750 0.31 -1.6 591,319 - TX73_002750 0.36 -0.7 591,323 + TX73_002750 0.36 -1.5 591,323 + TX73_002750 0.36 -0.5 591,331 - TX73_002750 0.37 -0.1 591,331 - TX73_002750 0.37 -0.6 591,331 - TX73_002750 0.37 -0.3 591,342 - TX73_002750 0.38 -1.0 591,347 + TX73_002750 0.38 +0.0 591,353 - TX73_002750 0.39 -0.5 591,354 + TX73_002750 0.39 -0.1 591,355 - TX73_002750 0.39 -0.5 591,355 - TX73_002750 0.39 -0.2 591,373 - TX73_002750 0.41 -2.1 591,419 + TX73_002750 0.44 -0.3 591,444 - TX73_002750 0.47 -0.7 591,449 + TX73_002750 0.47 -1.6 591,449 + TX73_002750 0.47 -2.2 591,451 - TX73_002750 0.47 -0.6 591,484 - TX73_002750 0.50 -0.7 591,504 + TX73_002750 0.52 -0.5 591,520 - TX73_002750 0.53 -0.8 591,571 + TX73_002750 0.57 +0.4 591,584 + TX73_002750 0.58 -1.2 591,625 + TX73_002750 0.62 -1.1 591,660 + TX73_002750 0.65 -0.9 591,671 - TX73_002750 0.66 -1.1 591,710 + TX73_002750 0.69 +0.0 591,718 - TX73_002750 0.70 -0.6 591,718 - TX73_002750 0.70 +0.0 591,732 - TX73_002750 0.71 +0.0 591,742 - TX73_002750 0.72 +0.1 591,742 - TX73_002750 0.72 -0.1 591,742 - TX73_002750 0.72 -0.8 591,760 + TX73_002750 0.73 -0.1 591,765 + TX73_002750 0.74 -2.3 591,765 + TX73_002750 0.74 -0.4 591,765 + TX73_002750 0.74 -0.0 591,789 + TX73_002750 0.76 -0.1 591,794 + TX73_002750 0.76 -0.6 591,794 + TX73_002750 0.76 -1.2 591,797 - TX73_002750 0.77 +0.1 591,802 - TX73_002750 0.77 -0.2 591,802 - TX73_002750 0.77 -1.2 591,820 + TX73_002750 0.78 -0.4 591,820 + TX73_002750 0.78 -0.5 591,825 + TX73_002750 0.79 -0.4 591,828 - TX73_002750 0.79 -0.8 591,828 - TX73_002750 0.79 +0.3 591,848 - TX73_002750 0.81 -0.8 591,855 + TX73_002750 0.81 -0.3 591,860 + TX73_002750 0.82 -1.4 591,863 - TX73_002750 0.82 +0.1 591,863 - TX73_002750 0.82 -1.1 591,863 - TX73_002750 0.82 -1.4 591,868 - TX73_002750 0.83 -0.5 591,868 - TX73_002750 0.83 +0.4 591,868 - TX73_002750 0.83 -1.1 591,895 + TX73_002750 0.85 -0.3 591,903 - TX73_002750 0.85 -0.5 591,944 - TX73_002750 0.89 -0.8 591,946 - TX73_002750 0.89 -0.7 591,957 - -0.0 591,964 + -0.1 591,967 + -1.2 591,980 + -0.9 591,987 + -1.3 591,987 + -0.8 591,987 + -0.5 592,027 + -1.1 592,038 + -1.0 592,046 - -0.6 592,046 - -0.1 592,053 - -0.4 592,053 - -1.3 592,058 - -1.0 592,075 - -0.5 592,079 + +0.3 592,092 + -0.1 592,111 + +0.1 592,178 + +0.1 592,246 + +0.8 592,316 + +1.5 592,326 - +0.5 592,358 + TX73_002755 0.14 +2.5 592,363 + TX73_002755 0.15 -0.5 592,474 - TX73_002755 0.30 +0.5 592,549 + TX73_002755 0.40 +0.5 592,559 - TX73_002755 0.42 +0.2 592,590 + TX73_002755 0.46 -0.3 592,664 + TX73_002755 0.56 +1.1 592,681 - TX73_002755 0.59 +0.8 592,767 + TX73_002755 0.70 +4.5 592,795 - TX73_002755 0.74 +1.7 592,807 + TX73_002755 0.76 +1.0 592,813 + TX73_002755 0.77 +0.6 592,815 - TX73_002755 0.77 +1.3 592,834 + TX73_002755 0.80 -0.3 592,878 + TX73_002755 0.86 +0.4 592,888 - TX73_002755 0.87 +1.3 592,888 - TX73_002755 0.87 +0.7 592,904 + TX73_002755 0.89 +1.1 592,914 - +0.1 592,940 + +2.1 592,941 - -0.3 592,949 - +0.7 592,949 - +0.2 592,949 - +1.0 592,949 - +2.5 592,976 + -0.3 593,029 + -0.1 593,050 - -0.3 593,055 + +0.3 593,063 - +0.2 593,069 - -0.1 593,084 - -0.0 593,105 - +0.3 593,120 + -0.3 593,138 - -1.4 593,140 + -0.0 593,172 + TX73_002760 0.13 -0.3 593,174 - TX73_002760 0.13 +0.4 593,212 - TX73_002760 0.18 -1.3 593,227 - TX73_002760 0.19 -0.3 593,231 - TX73_002760 0.20 -0.3 593,240 + TX73_002760 0.21 +0.3 593,240 + TX73_002760 0.21 +0.1 593,246 - TX73_002760 0.22 -0.3 593,250 + TX73_002760 0.22 +0.2 593,255 + TX73_002760 0.23 +0.1 593,255 + TX73_002760 0.23 +0.4 593,258 - TX73_002760 0.23 -0.1 593,287 + TX73_002760 0.26 -0.9 593,311 + TX73_002760 0.29 -0.1 593,338 - TX73_002760 0.32 -0.7 593,390 + TX73_002760 0.38 -1.1 593,433 + TX73_002760 0.43 -1.1 593,449 + TX73_002760 0.45 +1.2 593,452 + TX73_002760 0.45 -0.5 593,454 + TX73_002760 0.46 -1.2 593,460 - TX73_002760 0.46 -0.0 593,460 - TX73_002760 0.46 +0.1 593,460 - TX73_002760 0.46 +0.4 593,462 - TX73_002760 0.47 +0.6 593,467 - TX73_002760 0.47 -0.4 593,467 - TX73_002760 0.47 +0.4 593,479 - TX73_002760 0.49 -0.8 593,479 - TX73_002760 0.49 -0.2 593,513 - TX73_002760 0.52 +0.3 593,529 + TX73_002760 0.54 -0.9 593,537 - TX73_002760 0.55 -0.9 593,567 + TX73_002760 0.59 +0.3 593,572 + TX73_002760 0.59 -0.1 593,572 + TX73_002760 0.59 -0.1 593,572 + TX73_002760 0.59 -0.1 593,572 + TX73_002760 0.59 +0.0 593,572 + TX73_002760 0.59 -0.6 593,575 - TX73_002760 0.60 -0.5 593,577 + TX73_002760 0.60 -0.2 593,585 - TX73_002760 0.61 -0.1 593,598 + TX73_002760 0.62 +0.1 593,600 + TX73_002760 0.63 +0.1 593,635 + TX73_002760 0.67 +0.8 593,678 + TX73_002760 0.72 -0.8 593,712 - TX73_002760 0.75 -0.2 593,727 + TX73_002760 0.77 -0.3 593,751 - TX73_002760 0.80 -0.6 593,753 - TX73_002760 0.80 +0.3 593,753 - TX73_002760 0.80 -0.2 593,801 + TX73_002760 0.86 -0.6 593,809 - TX73_002760 0.87 +0.2 593,848 - -1.0 593,870 + -0.2 593,896 + -0.3 593,896 + +0.1 593,896 + -0.2 593,898 + -0.9 593,903 + -0.7 593,904 - -0.3 593,911 - -0.3 593,917 - -0.5 593,941 + +0.1 593,941 + -0.0 593,957 - +0.1 593,981 - +0.5
Or see this region's nucleotide sequence