Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11210 and HMPREF1058_RS11205 are separated by 45 nucleotides HMPREF1058_RS11205 and HMPREF1058_RS0119640 are separated by 544 nucleotides HMPREF1058_RS0119640 and HMPREF1058_RS11200 are separated by 189 nucleotides
HMPREF1058_RS11210: HMPREF1058_RS11210 - helix-hairpin-helix domain-containing protein, at 431,513 to 433,585
_RS11210
HMPREF1058_RS11205: HMPREF1058_RS11205 - radical SAM protein, at 433,631 to 434,407
_RS11205
HMPREF1058_RS0119640: HMPREF1058_RS0119640 - hypothetical protein, at 434,952 to 435,128
_RS0119640
HMPREF1058_RS11200: HMPREF1058_RS11200 - sulfate permease, at 435,318 to 437,000
_RS11200
Position (kb) 433
434
435 Strain fitness (log2 ratio) -2
-1
0
1 at 432.645 kb on - strand, within HMPREF1058_RS11210 at 432.648 kb on - strand, within HMPREF1058_RS11210 at 432.653 kb on - strand, within HMPREF1058_RS11210 at 432.810 kb on + strand, within HMPREF1058_RS11210 at 432.813 kb on + strand, within HMPREF1058_RS11210 at 432.830 kb on + strand, within HMPREF1058_RS11210 at 432.968 kb on + strand, within HMPREF1058_RS11210 at 432.986 kb on + strand, within HMPREF1058_RS11210 at 433.048 kb on + strand, within HMPREF1058_RS11210 at 433.049 kb on - strand, within HMPREF1058_RS11210 at 433.049 kb on - strand, within HMPREF1058_RS11210 at 433.052 kb on + strand, within HMPREF1058_RS11210 at 433.175 kb on - strand, within HMPREF1058_RS11210 at 433.175 kb on - strand, within HMPREF1058_RS11210 at 433.215 kb on - strand, within HMPREF1058_RS11210 at 433.218 kb on + strand, within HMPREF1058_RS11210 at 433.281 kb on - strand, within HMPREF1058_RS11210 at 433.283 kb on - strand, within HMPREF1058_RS11210 at 433.334 kb on - strand, within HMPREF1058_RS11210 at 433.345 kb on + strand, within HMPREF1058_RS11210 at 433.360 kb on + strand, within HMPREF1058_RS11210 at 433.360 kb on + strand, within HMPREF1058_RS11210 at 433.365 kb on - strand, within HMPREF1058_RS11210 at 433.383 kb on - strand at 433.410 kb on - strand at 433.412 kb on - strand at 433.412 kb on - strand at 433.487 kb on - strand at 433.512 kb on + strand at 433.559 kb on + strand at 433.560 kb on - strand at 433.675 kb on + strand at 433.676 kb on - strand at 434.048 kb on - strand, within HMPREF1058_RS11205 at 434.053 kb on + strand, within HMPREF1058_RS11205 at 434.195 kb on - strand, within HMPREF1058_RS11205 at 434.448 kb on + strand at 434.470 kb on + strand at 434.470 kb on + strand at 434.471 kb on - strand at 434.487 kb on + strand at 434.487 kb on + strand at 434.487 kb on + strand at 434.488 kb on - strand at 434.519 kb on - strand at 434.520 kb on + strand at 434.556 kb on - strand at 434.569 kb on + strand at 434.570 kb on - strand at 434.594 kb on - strand at 434.606 kb on + strand at 434.607 kb on - strand at 434.607 kb on - strand at 434.607 kb on - strand at 434.612 kb on + strand at 434.622 kb on + strand at 434.622 kb on + strand at 434.625 kb on - strand at 434.689 kb on + strand at 434.690 kb on - strand at 434.690 kb on - strand at 434.777 kb on + strand at 434.777 kb on + strand at 434.778 kb on - strand at 434.859 kb on + strand at 434.861 kb on + strand at 434.862 kb on - strand at 434.876 kb on + strand at 434.877 kb on - strand at 434.877 kb on - strand at 434.920 kb on + strand at 434.997 kb on - strand, within HMPREF1058_RS0119640 at 435.009 kb on - strand, within HMPREF1058_RS0119640 at 435.026 kb on + strand, within HMPREF1058_RS0119640 at 435.055 kb on + strand, within HMPREF1058_RS0119640 at 435.108 kb on + strand, within HMPREF1058_RS0119640 at 435.126 kb on + strand at 435.211 kb on + strand at 435.211 kb on + strand at 435.286 kb on + strand at 435.327 kb on + strand at 435.365 kb on + strand at 435.365 kb on + strand at 435.366 kb on - strand at 435.398 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 432,645 - HMPREF1058_RS11210 0.55 -0.7 432,648 - HMPREF1058_RS11210 0.55 -1.3 432,653 - HMPREF1058_RS11210 0.55 -0.4 432,810 + HMPREF1058_RS11210 0.63 +0.5 432,813 + HMPREF1058_RS11210 0.63 +0.3 432,830 + HMPREF1058_RS11210 0.64 -0.1 432,968 + HMPREF1058_RS11210 0.70 -0.2 432,986 + HMPREF1058_RS11210 0.71 -0.2 433,048 + HMPREF1058_RS11210 0.74 -0.2 433,049 - HMPREF1058_RS11210 0.74 -0.1 433,049 - HMPREF1058_RS11210 0.74 -1.0 433,052 + HMPREF1058_RS11210 0.74 -0.5 433,175 - HMPREF1058_RS11210 0.80 +0.1 433,175 - HMPREF1058_RS11210 0.80 -1.7 433,215 - HMPREF1058_RS11210 0.82 +0.4 433,218 + HMPREF1058_RS11210 0.82 -0.3 433,281 - HMPREF1058_RS11210 0.85 +0.6 433,283 - HMPREF1058_RS11210 0.85 -0.1 433,334 - HMPREF1058_RS11210 0.88 -1.0 433,345 + HMPREF1058_RS11210 0.88 +0.0 433,360 + HMPREF1058_RS11210 0.89 +1.2 433,360 + HMPREF1058_RS11210 0.89 +0.1 433,365 - HMPREF1058_RS11210 0.89 -0.5 433,383 - -1.4 433,410 - +0.2 433,412 - -0.9 433,412 - -0.5 433,487 - -0.1 433,512 + -0.4 433,559 + +0.1 433,560 - -1.9 433,675 + -1.4 433,676 - -0.9 434,048 - HMPREF1058_RS11205 0.54 -1.6 434,053 + HMPREF1058_RS11205 0.54 -2.4 434,195 - HMPREF1058_RS11205 0.73 -1.6 434,448 + +0.3 434,470 + -0.0 434,470 + +1.3 434,471 - -0.5 434,487 + +1.6 434,487 + -0.3 434,487 + -0.0 434,488 - +0.2 434,519 - -0.4 434,520 + -0.5 434,556 - -0.2 434,569 + +0.5 434,570 - -0.2 434,594 - +0.2 434,606 + -0.3 434,607 - -0.1 434,607 - -0.6 434,607 - -0.4 434,612 + -0.6 434,622 + -0.9 434,622 + -0.6 434,625 - +0.3 434,689 + -1.9 434,690 - +0.6 434,690 - -0.7 434,777 + -1.2 434,777 + -0.2 434,778 - -0.1 434,859 + +0.1 434,861 + +0.1 434,862 - +0.6 434,876 + -0.7 434,877 - -0.2 434,877 - +0.3 434,920 + +0.6 434,997 - HMPREF1058_RS0119640 0.25 +0.4 435,009 - HMPREF1058_RS0119640 0.32 +0.2 435,026 + HMPREF1058_RS0119640 0.42 +0.4 435,055 + HMPREF1058_RS0119640 0.58 +0.2 435,108 + HMPREF1058_RS0119640 0.88 -0.5 435,126 + +0.1 435,211 + -0.2 435,211 + -0.5 435,286 + +0.5 435,327 + -0.3 435,365 + +1.7 435,365 + -0.1 435,366 - -0.2 435,398 + -0.2
Or see this region's nucleotide sequence