Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023560

Experiment: aspen wood chips that have been decomposed by a fungus (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_023550 and TX73_023555 are separated by 158 nucleotidesTX73_023555 and TX73_023560 are separated by 35 nucleotidesTX73_023560 and TX73_023565 are separated by 65 nucleotides TX73_023550: TX73_023550 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 5,113,702 to 5,114,991 _023550 TX73_023555: TX73_023555 - DUF3551 domain-containing protein, at 5,115,150 to 5,115,623 _023555 TX73_023560: TX73_023560 - hypothetical protein, at 5,115,659 to 5,115,946 _023560 TX73_023565: TX73_023565 - FAD-dependent oxidoreductase, at 5,116,012 to 5,117,703 _023565 Position (kb) 5115 5116Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5114.999 kb on - strandat 5115.016 kb on + strandat 5115.016 kb on + strandat 5115.029 kb on - strandat 5115.050 kb on - strandat 5115.076 kb on - strandat 5115.088 kb on + strandat 5115.101 kb on - strandat 5115.101 kb on - strandat 5115.118 kb on + strandat 5115.126 kb on - strandat 5115.126 kb on - strandat 5115.128 kb on + strandat 5115.136 kb on - strandat 5115.169 kb on - strandat 5115.220 kb on + strand, within TX73_023555at 5115.235 kb on - strand, within TX73_023555at 5115.245 kb on - strand, within TX73_023555at 5115.263 kb on - strand, within TX73_023555at 5115.274 kb on + strand, within TX73_023555at 5115.293 kb on + strand, within TX73_023555at 5115.294 kb on + strand, within TX73_023555at 5115.294 kb on + strand, within TX73_023555at 5115.294 kb on + strand, within TX73_023555at 5115.301 kb on - strand, within TX73_023555at 5115.302 kb on - strand, within TX73_023555at 5115.302 kb on - strand, within TX73_023555at 5115.302 kb on - strand, within TX73_023555at 5115.317 kb on + strand, within TX73_023555at 5115.318 kb on + strand, within TX73_023555at 5115.326 kb on - strand, within TX73_023555at 5115.343 kb on - strand, within TX73_023555at 5115.362 kb on + strand, within TX73_023555at 5115.365 kb on - strand, within TX73_023555at 5115.365 kb on - strand, within TX73_023555at 5115.370 kb on - strand, within TX73_023555at 5115.421 kb on + strand, within TX73_023555at 5115.426 kb on + strand, within TX73_023555at 5115.429 kb on - strand, within TX73_023555at 5115.429 kb on - strand, within TX73_023555at 5115.434 kb on - strand, within TX73_023555at 5115.436 kb on + strand, within TX73_023555at 5115.444 kb on - strand, within TX73_023555at 5115.444 kb on - strand, within TX73_023555at 5115.444 kb on - strand, within TX73_023555at 5115.459 kb on + strand, within TX73_023555at 5115.484 kb on + strand, within TX73_023555at 5115.497 kb on + strand, within TX73_023555at 5115.505 kb on - strand, within TX73_023555at 5115.505 kb on - strand, within TX73_023555at 5115.546 kb on - strand, within TX73_023555at 5115.575 kb on + strand, within TX73_023555at 5115.585 kb on + strandat 5115.593 kb on - strandat 5115.611 kb on - strandat 5115.618 kb on - strandat 5115.633 kb on - strandat 5115.645 kb on - strandat 5115.652 kb on - strandat 5115.654 kb on + strandat 5115.731 kb on + strand, within TX73_023560at 5115.732 kb on + strand, within TX73_023560at 5115.734 kb on - strand, within TX73_023560at 5115.736 kb on + strand, within TX73_023560at 5115.743 kb on + strand, within TX73_023560at 5115.744 kb on - strand, within TX73_023560at 5115.744 kb on - strand, within TX73_023560at 5115.801 kb on - strand, within TX73_023560at 5115.802 kb on - strand, within TX73_023560at 5115.845 kb on + strand, within TX73_023560at 5115.845 kb on + strand, within TX73_023560at 5115.864 kb on + strand, within TX73_023560at 5115.870 kb on - strand, within TX73_023560at 5115.870 kb on - strand, within TX73_023560at 5115.874 kb on + strand, within TX73_023560at 5115.876 kb on + strand, within TX73_023560at 5115.886 kb on + strand, within TX73_023560at 5115.886 kb on + strand, within TX73_023560at 5115.886 kb on + strand, within TX73_023560at 5115.889 kb on - strand, within TX73_023560at 5115.891 kb on + strand, within TX73_023560at 5115.896 kb on + strand, within TX73_023560at 5115.899 kb on - strand, within TX73_023560at 5115.945 kb on + strandat 5115.951 kb on + strandat 5115.951 kb on + strandat 5115.966 kb on + strandat 5115.971 kb on - strandat 5115.973 kb on + strandat 5115.973 kb on + strandat 5115.973 kb on + strandat 5115.978 kb on + strandat 5115.978 kb on + strandat 5115.981 kb on - strandat 5115.986 kb on - strandat 5116.038 kb on - strandat 5116.038 kb on - strandat 5116.055 kb on - strandat 5116.088 kb on - strandat 5116.089 kb on + strandat 5116.119 kb on + strandat 5116.121 kb on - strandat 5116.127 kb on - strandat 5116.153 kb on + strandat 5116.154 kb on - strandat 5116.154 kb on - strandat 5116.158 kb on + strandat 5116.204 kb on + strand, within TX73_023565at 5116.204 kb on + strand, within TX73_023565at 5116.207 kb on - strand, within TX73_023565at 5116.211 kb on - strand, within TX73_023565at 5116.212 kb on - strand, within TX73_023565at 5116.212 kb on - strand, within TX73_023565at 5116.212 kb on - strand, within TX73_023565at 5116.229 kb on + strand, within TX73_023565at 5116.232 kb on - strand, within TX73_023565at 5116.238 kb on + strand, within TX73_023565at 5116.250 kb on + strand, within TX73_023565at 5116.285 kb on + strand, within TX73_023565at 5116.327 kb on + strand, within TX73_023565at 5116.365 kb on + strand, within TX73_023565at 5116.370 kb on + strand, within TX73_023565at 5116.372 kb on - strand, within TX73_023565at 5116.380 kb on - strand, within TX73_023565at 5116.400 kb on + strand, within TX73_023565at 5116.463 kb on + strand, within TX73_023565at 5116.466 kb on - strand, within TX73_023565at 5116.468 kb on - strand, within TX73_023565at 5116.471 kb on - strand, within TX73_023565at 5116.483 kb on + strand, within TX73_023565at 5116.483 kb on + strand, within TX73_023565at 5116.487 kb on + strand, within TX73_023565at 5116.496 kb on + strand, within TX73_023565at 5116.616 kb on + strand, within TX73_023565at 5116.745 kb on - strand, within TX73_023565at 5116.756 kb on + strand, within TX73_023565at 5116.802 kb on + strand, within TX73_023565at 5116.814 kb on - strand, within TX73_023565at 5116.862 kb on + strand, within TX73_023565at 5116.875 kb on - strand, within TX73_023565at 5116.906 kb on + strand, within TX73_023565at 5116.907 kb on - strand, within TX73_023565at 5116.909 kb on - strand, within TX73_023565at 5116.937 kb on + strand, within TX73_023565at 5116.937 kb on + strand, within TX73_023565at 5116.945 kb on - strand, within TX73_023565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction aspen wood chips that have been decomposed by a fungus (C)
remove
5,114,999 - +0.1
5,115,016 + +0.1
5,115,016 + -0.6
5,115,029 - -0.0
5,115,050 - -0.1
5,115,076 - -0.9
5,115,088 + +0.5
5,115,101 - -0.5
5,115,101 - -0.1
5,115,118 + +0.5
5,115,126 - +0.0
5,115,126 - -0.5
5,115,128 + -0.1
5,115,136 - -1.1
5,115,169 - -3.7
5,115,220 + TX73_023555 0.15 -2.7
5,115,235 - TX73_023555 0.18 +0.6
5,115,245 - TX73_023555 0.20 -0.0
5,115,263 - TX73_023555 0.24 -0.1
5,115,274 + TX73_023555 0.26 -0.4
5,115,293 + TX73_023555 0.30 -1.2
5,115,294 + TX73_023555 0.30 +1.8
5,115,294 + TX73_023555 0.30 -0.5
5,115,294 + TX73_023555 0.30 -0.3
5,115,301 - TX73_023555 0.32 -0.1
5,115,302 - TX73_023555 0.32 -0.0
5,115,302 - TX73_023555 0.32 +0.1
5,115,302 - TX73_023555 0.32 -0.4
5,115,317 + TX73_023555 0.35 -1.1
5,115,318 + TX73_023555 0.35 +0.0
5,115,326 - TX73_023555 0.37 -4.0
5,115,343 - TX73_023555 0.41 +0.4
5,115,362 + TX73_023555 0.45 -1.2
5,115,365 - TX73_023555 0.45 -1.1
5,115,365 - TX73_023555 0.45 +0.6
5,115,370 - TX73_023555 0.46 -0.1
5,115,421 + TX73_023555 0.57 -1.5
5,115,426 + TX73_023555 0.58 -0.4
5,115,429 - TX73_023555 0.59 +0.4
5,115,429 - TX73_023555 0.59 +0.2
5,115,434 - TX73_023555 0.60 -1.0
5,115,436 + TX73_023555 0.60 +0.5
5,115,444 - TX73_023555 0.62 +0.0
5,115,444 - TX73_023555 0.62 -0.7
5,115,444 - TX73_023555 0.62 -4.3
5,115,459 + TX73_023555 0.65 +0.5
5,115,484 + TX73_023555 0.70 -1.1
5,115,497 + TX73_023555 0.73 -0.5
5,115,505 - TX73_023555 0.75 +0.8
5,115,505 - TX73_023555 0.75 +1.3
5,115,546 - TX73_023555 0.84 +0.9
5,115,575 + TX73_023555 0.90 +1.8
5,115,585 + -0.2
5,115,593 - -1.1
5,115,611 - +0.2
5,115,618 - -2.8
5,115,633 - -0.4
5,115,645 - -0.6
5,115,652 - +1.3
5,115,654 + +1.0
5,115,731 + TX73_023560 0.25 +0.1
5,115,732 + TX73_023560 0.25 -1.6
5,115,734 - TX73_023560 0.26 -0.4
5,115,736 + TX73_023560 0.27 -2.4
5,115,743 + TX73_023560 0.29 +0.1
5,115,744 - TX73_023560 0.30 +0.1
5,115,744 - TX73_023560 0.30 +0.3
5,115,801 - TX73_023560 0.49 -0.4
5,115,802 - TX73_023560 0.50 +0.5
5,115,845 + TX73_023560 0.65 -0.6
5,115,845 + TX73_023560 0.65 -0.4
5,115,864 + TX73_023560 0.71 +1.0
5,115,870 - TX73_023560 0.73 +0.7
5,115,870 - TX73_023560 0.73 +0.6
5,115,874 + TX73_023560 0.75 -0.2
5,115,876 + TX73_023560 0.75 -0.2
5,115,886 + TX73_023560 0.79 -0.5
5,115,886 + TX73_023560 0.79 -0.5
5,115,886 + TX73_023560 0.79 -1.3
5,115,889 - TX73_023560 0.80 +0.3
5,115,891 + TX73_023560 0.81 +0.4
5,115,896 + TX73_023560 0.82 -0.3
5,115,899 - TX73_023560 0.83 -1.7
5,115,945 + +1.2
5,115,951 + -1.9
5,115,951 + +1.2
5,115,966 + -0.9
5,115,971 - +1.5
5,115,973 + -1.0
5,115,973 + +0.6
5,115,973 + +1.3
5,115,978 + +0.2
5,115,978 + +0.5
5,115,981 - +0.3
5,115,986 - -0.3
5,116,038 - -0.6
5,116,038 - +0.1
5,116,055 - -0.6
5,116,088 - +1.7
5,116,089 + +0.7
5,116,119 + +1.3
5,116,121 - -0.7
5,116,127 - +0.4
5,116,153 + -0.1
5,116,154 - +0.9
5,116,154 - +0.6
5,116,158 + +0.7
5,116,204 + TX73_023565 0.11 +1.4
5,116,204 + TX73_023565 0.11 +0.8
5,116,207 - TX73_023565 0.12 +0.5
5,116,211 - TX73_023565 0.12 -1.1
5,116,212 - TX73_023565 0.12 +1.6
5,116,212 - TX73_023565 0.12 -1.0
5,116,212 - TX73_023565 0.12 +0.1
5,116,229 + TX73_023565 0.13 -0.3
5,116,232 - TX73_023565 0.13 +0.3
5,116,238 + TX73_023565 0.13 +1.0
5,116,250 + TX73_023565 0.14 -0.9
5,116,285 + TX73_023565 0.16 +1.2
5,116,327 + TX73_023565 0.19 +0.5
5,116,365 + TX73_023565 0.21 +0.3
5,116,370 + TX73_023565 0.21 -1.3
5,116,372 - TX73_023565 0.21 +0.3
5,116,380 - TX73_023565 0.22 -0.1
5,116,400 + TX73_023565 0.23 +0.6
5,116,463 + TX73_023565 0.27 +0.6
5,116,466 - TX73_023565 0.27 -3.6
5,116,468 - TX73_023565 0.27 -0.1
5,116,471 - TX73_023565 0.27 +0.7
5,116,483 + TX73_023565 0.28 +1.1
5,116,483 + TX73_023565 0.28 +0.1
5,116,487 + TX73_023565 0.28 -0.1
5,116,496 + TX73_023565 0.29 +0.1
5,116,616 + TX73_023565 0.36 +0.7
5,116,745 - TX73_023565 0.43 +0.5
5,116,756 + TX73_023565 0.44 +0.3
5,116,802 + TX73_023565 0.47 -0.0
5,116,814 - TX73_023565 0.47 +0.0
5,116,862 + TX73_023565 0.50 +0.4
5,116,875 - TX73_023565 0.51 -0.1
5,116,906 + TX73_023565 0.53 +0.4
5,116,907 - TX73_023565 0.53 -0.3
5,116,909 - TX73_023565 0.53 +0.2
5,116,937 + TX73_023565 0.55 -0.1
5,116,937 + TX73_023565 0.55 -0.4
5,116,945 - TX73_023565 0.55 +1.2

Or see this region's nucleotide sequence