Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019850

Experiment: aspen wood chips that have been decomposed by a fungus (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aspen wood chips that have been decomposed by a fungus (C)
4,325,455	+		TX73_019845	0.17	+0.3
4,325,463	-		TX73_019845	0.18	+1.1
4,325,463	-		TX73_019845	0.18	+0.1
4,325,485	+		TX73_019845	0.20	+1.2
4,325,493	-		TX73_019845	0.21	-2.1
4,325,518	-		TX73_019845	0.24	+0.9
4,325,520	+		TX73_019845	0.24	+0.9
4,325,530	-		TX73_019845	0.25	+0.4
4,325,620	-		TX73_019845	0.34	+0.1
4,325,628	-		TX73_019845	0.35	+1.0
4,325,635	+		TX73_019845	0.36	-1.1
4,325,641	-		TX73_019845	0.36	+1.0
4,325,644	-		TX73_019845	0.36	-0.2
4,325,661	+		TX73_019845	0.38	+1.3
4,325,661	+		TX73_019845	0.38	-0.0
4,325,661	+		TX73_019845	0.38	-0.4
4,325,661	+		TX73_019845	0.38	-0.2
4,325,661	+		TX73_019845	0.38	-1.0
4,325,669	-		TX73_019845	0.39	+0.0
4,325,669	-		TX73_019845	0.39	-0.7
4,325,669	-		TX73_019845	0.39	+0.7
4,325,669	-		TX73_019845	0.39	+0.6
4,325,676	+		TX73_019845	0.40	-2.1
4,325,686	-		TX73_019845	0.41	+0.3
4,325,703	+		TX73_019845	0.42	-0.1
4,325,711	+		TX73_019845	0.43	-0.0
4,325,732	-		TX73_019845	0.45	-0.7
4,325,735	+		TX73_019845	0.46	-1.0
4,325,804	-		TX73_019845	0.53	+0.3
4,325,805	+		TX73_019845	0.53	-0.9
4,325,876	-		TX73_019845	0.60	+0.7
4,325,940	+		TX73_019845	0.66	+0.0
4,325,989	-		TX73_019845	0.71	-0.6
4,325,989	-		TX73_019845	0.71	-0.9
4,326,038	+		TX73_019845	0.76	+0.5
4,326,060	+		TX73_019845	0.78	+0.6
4,326,070	+		TX73_019845	0.79	-0.5
4,326,072	+		TX73_019845	0.80	+0.3
4,326,085	+		TX73_019845	0.81	-0.5
4,326,211	-				+0.3
4,326,213	+				+0.5
4,326,213	+				-1.1
4,326,221	-				+0.5
4,326,221	-				+0.3
4,326,257	-				+0.1
4,326,278	-				-2.0
4,326,287	+				-0.3
4,326,411	+				-0.2
4,326,414	-				+0.1
4,326,424	-				-0.7
4,326,435	+				-1.3
4,326,435	+				+0.2
4,326,444	-				-3.4
4,326,447	+				+0.7
4,326,452	+				+0.8
4,326,453	-				-0.4
4,326,460	-				-2.9
4,326,460	-				+0.2
4,326,471	+				-0.0
4,326,479	-				+0.1
4,326,482	+				-0.6
4,326,482	+				-0.4
4,326,535	+				+0.8
4,326,558	-				-0.6
4,326,558	-				-0.7
4,326,558	-				-2.7
4,326,562	-				-0.9
4,326,564	-				+1.4
4,326,571	+				+0.5
4,326,579	-		TX73_019850	0.10	+0.6
4,326,601	+		TX73_019850	0.12	-1.4
4,326,601	+		TX73_019850	0.12	-0.1
4,326,601	+		TX73_019850	0.12	+1.4
4,326,604	-		TX73_019850	0.12	+0.2
4,326,606	+		TX73_019850	0.13	-1.6
4,326,606	+		TX73_019850	0.13	-0.6
4,326,606	+		TX73_019850	0.13	-1.5
4,326,609	-		TX73_019850	0.13	-0.1
4,326,614	-		TX73_019850	0.13	-2.6
4,326,614	-		TX73_019850	0.13	-2.8
4,326,634	+		TX73_019850	0.15	+1.0
4,326,634	+		TX73_019850	0.15	-0.0
4,326,635	+		TX73_019850	0.15	+0.7
4,326,675	+		TX73_019850	0.18	-0.1
4,326,713	+		TX73_019850	0.21	+0.8
4,326,713	+		TX73_019850	0.21	-0.1
4,326,723	+		TX73_019850	0.22	-2.1
4,326,723	+		TX73_019850	0.22	-0.7
4,326,728	-		TX73_019850	0.23	+0.8
4,326,731	-		TX73_019850	0.23	+1.5
4,326,744	-		TX73_019850	0.24	-0.3
4,326,824	+		TX73_019850	0.31	-0.4
4,326,846	+		TX73_019850	0.33	+1.4
4,326,854	-		TX73_019850	0.33	+0.2
4,326,861	+		TX73_019850	0.34	-1.3
4,326,875	+		TX73_019850	0.35	+1.8
4,326,889	+		TX73_019850	0.36	-0.1
4,326,889	+		TX73_019850	0.36	-0.1
4,326,889	-		TX73_019850	0.36	+0.9
4,326,920	+		TX73_019850	0.39	-0.5
4,326,921	-		TX73_019850	0.39	-0.6
4,326,923	+		TX73_019850	0.39	+0.9
4,326,928	-		TX73_019850	0.39	-1.7
4,326,947	+		TX73_019850	0.41	-1.5
4,326,960	-		TX73_019850	0.42	+0.0
4,326,987	-		TX73_019850	0.44	+0.5
4,326,994	+		TX73_019850	0.45	-1.3
4,327,019	+		TX73_019850	0.47	+1.9
4,327,019	-		TX73_019850	0.47	+0.4
4,327,043	-		TX73_019850	0.49	-0.9
4,327,052	+		TX73_019850	0.50	+0.5
4,327,094	+		TX73_019850	0.53	+1.0
4,327,094	+		TX73_019850	0.53	+0.1
4,327,107	+		TX73_019850	0.54	-1.0
4,327,107	+		TX73_019850	0.54	-0.1
4,327,107	+		TX73_019850	0.54	-3.4
4,327,107	+		TX73_019850	0.54	+0.4
4,327,107	+		TX73_019850	0.54	-0.4
4,327,107	+		TX73_019850	0.54	+0.3
4,327,115	-		TX73_019850	0.55	-1.9
4,327,115	-		TX73_019850	0.55	-0.7
4,327,115	-		TX73_019850	0.55	-0.2
4,327,115	-		TX73_019850	0.55	+0.1
4,327,142	-		TX73_019850	0.57	+1.1
4,327,154	+		TX73_019850	0.58	-1.2
4,327,160	-		TX73_019850	0.59	+0.9
4,327,162	-		TX73_019850	0.59	+1.6
4,327,165	-		TX73_019850	0.59	+0.7
4,327,166	+		TX73_019850	0.59	-1.5
4,327,179	-		TX73_019850	0.60	-1.9
4,327,179	-		TX73_019850	0.60	+1.6
4,327,197	+		TX73_019850	0.62	+1.0
4,327,221	+		TX73_019850	0.64	-0.3
4,327,229	-		TX73_019850	0.65	+0.4
4,327,242	+		TX73_019850	0.66	-0.6
4,327,244	-		TX73_019850	0.66	-0.4
4,327,247	+		TX73_019850	0.66	+0.2
4,327,247	+		TX73_019850	0.66	-0.5
4,327,268	+		TX73_019850	0.68	+0.3
4,327,276	-		TX73_019850	0.68	-1.4
4,327,319	-		TX73_019850	0.72	+0.7
4,327,324	-		TX73_019850	0.72	-0.4
4,327,330	+		TX73_019850	0.73	-1.0
4,327,347	+		TX73_019850	0.74	+0.2
4,327,347	+		TX73_019850	0.74	+0.7
4,327,347	+		TX73_019850	0.74	-1.6
4,327,347	+		TX73_019850	0.74	-0.6
4,327,347	+		TX73_019850	0.74	+0.4
4,327,347	+		TX73_019850	0.74	-0.9
4,327,347	+		TX73_019850	0.74	-0.4
4,327,347	+		TX73_019850	0.74	+0.0
4,327,347	+		TX73_019850	0.74	+0.6
4,327,353	+		TX73_019850	0.75	+0.5
4,327,355	-		TX73_019850	0.75	-0.4
4,327,355	-		TX73_019850	0.75	-1.2
4,327,355	-		TX73_019850	0.75	-1.0
4,327,355	-		TX73_019850	0.75	-0.3
4,327,355	-		TX73_019850	0.75	-2.3
4,327,365	-		TX73_019850	0.76	-1.4
4,327,366	-		TX73_019850	0.76	-1.6
4,327,374	+		TX73_019850	0.77	-1.6
4,327,374	+		TX73_019850	0.77	+0.4
4,327,380	+		TX73_019850	0.77	-0.5
4,327,382	-		TX73_019850	0.77	+0.7
4,327,390	+		TX73_019850	0.78	-1.0
4,327,392	+		TX73_019850	0.78	+0.1
4,327,397	+		TX73_019850	0.79	-0.5
4,327,398	-		TX73_019850	0.79	-0.7
4,327,400	-		TX73_019850	0.79	+0.5
4,327,400	-		TX73_019850	0.79	-1.5
4,327,405	-		TX73_019850	0.79	-0.1
4,327,408	+		TX73_019850	0.79	+0.3
4,327,419	+		TX73_019850	0.80	-1.3
4,327,419	+		TX73_019850	0.80	+0.9
4,327,421	+		TX73_019850	0.81	+1.3
4,327,427	-		TX73_019850	0.81	+0.6
4,327,427	-		TX73_019850	0.81	-0.7
4,327,429	-		TX73_019850	0.81	+0.2
4,327,437	-		TX73_019850	0.82	+0.3
4,327,438	+		TX73_019850	0.82	-0.4
4,327,444	+		TX73_019850	0.82	-1.5
4,327,450	+		TX73_019850	0.83	+0.9
4,327,464	+		TX73_019850	0.84	+0.4
4,327,504	+		TX73_019850	0.87	+0.5
4,327,512	-		TX73_019850	0.88	+0.5
4,327,528	+		TX73_019850	0.89	-2.5
4,327,536	-				-0.9
4,327,556	+				-0.3
4,327,556	-				-0.2
4,327,557	+				+0.7
4,327,576	+				-1.1
4,327,576	+				+1.4
4,327,576	+				-0.2
4,327,584	-				-0.4
4,327,584	-				-0.1
4,327,584	-				-1.2
4,327,584	-				-0.1
4,327,584	-				+1.1
4,327,600	-				+0.9
4,327,602	+				-1.0
4,327,604	+				+0.4
4,327,617	+				+0.3
4,327,623	+				+0.4
4,327,631	-				-0.3
4,327,631	-				+0.6
4,327,633	+				-1.6
4,327,638	+				+0.3
4,327,644	+				+0.7
4,327,658	-				+0.1
4,327,687	-				-0.1
4,327,687	-				+0.8
4,327,687	-				-0.2
4,327,687	-				-4.1
4,327,692	-				+0.1
4,327,696	-				-1.1
4,327,699	+				+0.4
4,327,699	+				+0.9
4,327,707	-				-0.2
4,327,710	-				-0.2
4,327,721	-				-1.6
4,327,726	-				-0.0
4,327,813	+				-0.5
4,327,822	-				+0.2
4,327,823	+				-1.4
4,327,823	+				+0.3
4,327,835	+				+0.9
4,327,858	+				-0.8
4,327,860	-				+0.9
4,327,912	-				+0.4
4,327,970	+				-0.9
4,327,970	+				+0.3
4,327,970	+				-0.0
4,327,970	+				+0.5
4,327,970	+				-0.8
4,327,978	-				+0.0
4,327,978	-				+0.4
4,327,978	-				-0.3
4,327,978	-				+0.0
4,327,978	-				+0.7
4,327,978	-				-1.8
4,327,978	-				+0.9
4,327,978	-				+0.2
4,327,978	-				+0.4
4,327,978	-				+0.4
4,327,978	-				-0.1
4,327,980	-				+0.3