Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_018380

Experiment: aspen wood chips that have been decomposed by a fungus (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aspen wood chips that have been decomposed by a fungus (C)
4,010,354	+		TX73_018375	0.38	-1.0
4,010,371	+		TX73_018375	0.40	+0.0
4,010,371	+		TX73_018375	0.40	-0.3
4,010,376	+		TX73_018375	0.40	-1.2
4,010,379	-		TX73_018375	0.40	-0.2
4,010,425	-		TX73_018375	0.44	-0.2
4,010,426	-		TX73_018375	0.44	-0.0
4,010,427	+		TX73_018375	0.44	+0.0
4,010,435	-		TX73_018375	0.45	+0.8
4,010,437	-		TX73_018375	0.45	+0.4
4,010,462	+		TX73_018375	0.47	-0.3
4,010,471	-		TX73_018375	0.48	+0.0
4,010,475	-		TX73_018375	0.48	+0.5
4,010,483	-		TX73_018375	0.49	+0.3
4,010,489	+		TX73_018375	0.49	+0.7
4,010,489	+		TX73_018375	0.49	+0.3
4,010,497	-		TX73_018375	0.50	-0.0
4,010,497	-		TX73_018375	0.50	-0.2
4,010,503	-		TX73_018375	0.50	+0.1
4,010,546	+		TX73_018375	0.54	-1.9
4,010,549	-		TX73_018375	0.54	-1.1
4,010,566	+		TX73_018375	0.55	+1.7
4,010,574	-		TX73_018375	0.56	+0.0
4,010,611	-		TX73_018375	0.59	+0.5
4,010,631	+		TX73_018375	0.61	+0.9
4,010,639	-		TX73_018375	0.61	+0.3
4,010,639	-		TX73_018375	0.61	-0.0
4,010,696	-		TX73_018375	0.66	+1.0
4,010,710	+		TX73_018375	0.67	-1.2
4,010,710	+		TX73_018375	0.67	-2.4
4,010,722	+		TX73_018375	0.68	+0.5
4,010,725	-		TX73_018375	0.68	-1.9
4,010,789	-		TX73_018375	0.73	-0.3
4,010,824	-		TX73_018375	0.76	-0.6
4,010,899	-		TX73_018375	0.82	+1.0
4,010,920	+		TX73_018375	0.84	+0.8
4,010,930	-		TX73_018375	0.85	-0.5
4,010,933	+		TX73_018375	0.85	-1.1
4,010,958	-		TX73_018375	0.87	-0.3
4,010,963	-		TX73_018375	0.87	+0.2
4,010,963	-		TX73_018375	0.87	-0.7
4,011,013	+				+1.0
4,011,035	-				+0.6
4,011,045	-				-2.1
4,011,045	-				-0.7
4,011,047	-				-1.9
4,011,069	-				+0.9
4,011,101	+				-0.0
4,011,114	+				+0.2
4,011,119	+				+0.8
4,011,127	+				-0.3
4,011,135	-				-0.3
4,011,144	-				+0.9
4,011,168	-				+1.3
4,011,229	-				-2.0
4,011,236	+				-0.2
4,011,274	-				+0.1
4,011,275	+				+0.5
4,011,283	+				-1.2
4,011,290	+				+0.2
4,011,290	+				-1.0
4,011,309	+				+0.5
4,011,370	-				-1.2
4,011,372	-				+1.3
4,011,374	+				+0.5
4,011,427	-				+1.2
4,011,454	-		TX73_018380	0.11	+0.0
4,011,456	+		TX73_018380	0.11	-2.8
4,011,587	+		TX73_018380	0.18	+1.0
4,011,603	-		TX73_018380	0.18	+0.9
4,011,604	-		TX73_018380	0.18	-1.7
4,011,619	+		TX73_018380	0.19	-0.6
4,011,732	-		TX73_018380	0.25	-0.2
4,011,737	-		TX73_018380	0.25	-1.5
4,011,742	-		TX73_018380	0.26	+0.6
4,011,748	-		TX73_018380	0.26	+0.7
4,011,750	+		TX73_018380	0.26	+0.8
4,011,763	+		TX73_018380	0.27	-1.0
4,011,767	+		TX73_018380	0.27	+0.6
4,011,773	-		TX73_018380	0.27	+0.4
4,011,775	+		TX73_018380	0.27	-2.9
4,011,783	-		TX73_018380	0.28	-0.5
4,011,810	-		TX73_018380	0.29	-1.2
4,011,900	+		TX73_018380	0.34	-0.2
4,011,908	-		TX73_018380	0.34	+0.2
4,011,973	+		TX73_018380	0.37	+1.3
4,011,973	+		TX73_018380	0.37	+0.5
4,011,981	-		TX73_018380	0.38	+0.6
4,011,981	-		TX73_018380	0.38	+0.4
4,011,994	+		TX73_018380	0.38	-0.1
4,011,994	+		TX73_018380	0.38	-0.2
4,011,994	+		TX73_018380	0.38	-4.0
4,012,002	-		TX73_018380	0.39	-1.0
4,012,002	-		TX73_018380	0.39	+0.3
4,012,004	+		TX73_018380	0.39	+0.1
4,012,051	+		TX73_018380	0.41	-0.2
4,012,051	+		TX73_018380	0.41	+0.6
4,012,071	+		TX73_018380	0.42	-0.4
4,012,089	-		TX73_018380	0.43	-0.2
4,012,097	-		TX73_018380	0.44	-0.4
4,012,119	+		TX73_018380	0.45	-0.8
4,012,124	+		TX73_018380	0.45	+1.3
4,012,144	+		TX73_018380	0.46	+0.2
4,012,154	+		TX73_018380	0.47	+0.9
4,012,177	-		TX73_018380	0.48	-0.6
4,012,177	-		TX73_018380	0.48	-0.7
4,012,198	-		TX73_018380	0.49	-1.3
4,012,215	+		TX73_018380	0.50	-0.0
4,012,223	-		TX73_018380	0.50	-0.9
4,012,288	+		TX73_018380	0.53	-0.5
4,012,288	+		TX73_018380	0.53	+1.0
4,012,331	+		TX73_018380	0.56	+0.6
4,012,411	+		TX73_018380	0.60	-0.4
4,012,411	+		TX73_018380	0.60	-2.0
4,012,413	+		TX73_018380	0.60	-0.0
4,012,429	-		TX73_018380	0.61	+0.2
4,012,451	-		TX73_018380	0.62	+0.4
4,012,451	-		TX73_018380	0.62	+0.5
4,012,454	+		TX73_018380	0.62	+1.1
4,012,455	+		TX73_018380	0.62	+0.2
4,012,462	-		TX73_018380	0.62	-2.3
4,012,486	+		TX73_018380	0.64	-1.3
4,012,486	+		TX73_018380	0.64	-0.4
4,012,492	+		TX73_018380	0.64	-0.5
4,012,494	-		TX73_018380	0.64	-1.6
4,012,509	-		TX73_018380	0.65	-1.0
4,012,527	+		TX73_018380	0.66	-0.1
4,012,527	+		TX73_018380	0.66	-0.8
4,012,535	-		TX73_018380	0.66	-1.0
4,012,552	+		TX73_018380	0.67	-0.4
4,012,560	-		TX73_018380	0.67	+0.2
4,012,560	-		TX73_018380	0.67	-0.0
4,012,562	+		TX73_018380	0.67	-0.8
4,012,562	+		TX73_018380	0.67	+0.1
4,012,562	+		TX73_018380	0.67	+1.0
4,012,562	+		TX73_018380	0.67	+0.7
4,012,570	-		TX73_018380	0.68	-0.9
4,012,589	-		TX73_018380	0.69	-0.2
4,012,599	-		TX73_018380	0.69	-0.6
4,012,630	+		TX73_018380	0.71	-0.8
4,012,681	+		TX73_018380	0.74	-0.3
4,012,681	+		TX73_018380	0.74	+0.2
4,012,683	+		TX73_018380	0.74	+0.9
4,012,691	-		TX73_018380	0.74	+0.8
4,012,691	-		TX73_018380	0.74	+0.1
4,012,706	-		TX73_018380	0.75	-0.5
4,012,717	+		TX73_018380	0.75	-1.1
4,012,717	+		TX73_018380	0.75	-1.0
4,012,719	+		TX73_018380	0.75	+0.4
4,012,725	-		TX73_018380	0.76	-0.6
4,012,725	-		TX73_018380	0.76	-0.2
4,012,725	-		TX73_018380	0.76	-0.3
4,012,727	-		TX73_018380	0.76	-0.8
4,012,745	-		TX73_018380	0.77	+0.7
4,012,758	+		TX73_018380	0.77	-0.4
4,012,766	-		TX73_018380	0.78	+0.0
4,012,778	-		TX73_018380	0.78	+0.2
4,012,783	+		TX73_018380	0.79	-1.1
4,012,835	-		TX73_018380	0.81	-0.3
4,012,835	-		TX73_018380	0.81	-0.1
4,012,874	+		TX73_018380	0.83	+0.1
4,012,879	-		TX73_018380	0.84	-0.2
4,012,884	-		TX73_018380	0.84	-3.0
4,012,886	+		TX73_018380	0.84	+0.7
4,012,910	+		TX73_018380	0.85	-0.1
4,012,921	+		TX73_018380	0.86	+0.9
4,012,921	+		TX73_018380	0.86	+0.5
4,012,929	-		TX73_018380	0.86	+0.5
4,012,929	-		TX73_018380	0.86	-1.7
4,012,929	-		TX73_018380	0.86	+0.4
4,012,929	-		TX73_018380	0.86	-0.5
4,013,017	+				+1.3
4,013,108	+				-0.2
4,013,127	+				-0.6
4,013,135	-				-0.2
4,013,158	-				-1.2
4,013,243	+				+0.6
4,013,243	+				+0.4
4,013,251	+				+0.4
4,013,252	-				-0.7
4,013,347	-				-2.1
4,013,514	+		TX73_018385	0.51	-0.1
4,013,522	-		TX73_018385	0.54	-0.7
4,013,541	-		TX73_018385	0.62	+0.5
4,013,569	-		TX73_018385	0.74	+1.4
4,013,621	-				-1.9
4,013,625	+				-0.7
4,013,625	+				+1.5
4,013,628	-				-1.1
4,013,640	+				-1.2
4,013,674	+				+0.9
4,013,674	-				-0.5
4,013,676	+				-0.2
4,013,679	+				+0.5
4,013,699	+				+0.7
4,013,701	-				+0.5
4,013,768	+				+0.7
4,013,768	+				+0.3
4,013,789	+				+1.1
4,013,789	+				+0.1
4,013,841	-				+0.7
4,013,845	+				-1.3
4,013,907	-				+1.0
4,013,923	+				-0.1
4,013,961	-				-3.3
4,013,986	+		TX73_018390	0.10	-0.9
4,013,986	+		TX73_018390	0.10	+0.4
4,013,994	-		TX73_018390	0.10	+0.8
4,013,994	-		TX73_018390	0.10	-1.0
4,013,994	-		TX73_018390	0.10	+1.6
4,014,003	-		TX73_018390	0.11	-0.0
4,014,014	+		TX73_018390	0.11	+0.2
4,014,035	+		TX73_018390	0.12	+0.5
4,014,040	+		TX73_018390	0.12	+1.0
4,014,040	+		TX73_018390	0.12	-0.3
4,014,040	+		TX73_018390	0.12	-0.7
4,014,040	+		TX73_018390	0.12	-0.3
4,014,041	-		TX73_018390	0.12	-0.9
4,014,043	-		TX73_018390	0.12	+0.4
4,014,048	-		TX73_018390	0.12	+0.1
4,014,048	-		TX73_018390	0.12	+0.7
4,014,050	+		TX73_018390	0.12	+0.4
4,014,053	+		TX73_018390	0.12	-0.8
4,014,053	+		TX73_018390	0.12	-1.4
4,014,061	-		TX73_018390	0.12	+0.9
4,014,107	+		TX73_018390	0.14	-0.9
4,014,126	-		TX73_018390	0.15	+0.7
4,014,156	-		TX73_018390	0.15	-0.7
4,014,160	+		TX73_018390	0.16	+0.2
4,014,160	+		TX73_018390	0.16	+0.8
4,014,172	+		TX73_018390	0.16	+0.1
4,014,177	+		TX73_018390	0.16	-0.0
4,014,177	+		TX73_018390	0.16	+0.8
4,014,177	+		TX73_018390	0.16	+0.8
4,014,185	-		TX73_018390	0.16	-1.3
4,014,185	-		TX73_018390	0.16	+0.1
4,014,190	-		TX73_018390	0.17	+1.6