Experiment: aspen wood chips that have been decomposed by a fungus (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_004425 and TX73_004430 are separated by 7 nucleotides TX73_004430 and TX73_004435 are separated by 5 nucleotides TX73_004435 and TX73_004440 are separated by 146 nucleotides
TX73_004425: TX73_004425 - zinc ABC transporter ATP-binding protein AztA, at 955,057 to 955,806
_004425
TX73_004430: TX73_004430 - metal ABC transporter permease, at 955,814 to 956,683
_004430
TX73_004435: TX73_004435 - metal ABC transporter substrate-binding protein, at 956,689 to 957,606
_004435
TX73_004440: TX73_004440 - GTP-binding protein, at 957,753 to 958,802
_004440
Position (kb) 956
957
958 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 955.699 kb on - strand, within TX73_004425 at 955.703 kb on + strand, within TX73_004425 at 955.711 kb on + strand, within TX73_004425 at 955.713 kb on - strand, within TX73_004425 at 955.731 kb on + strand, within TX73_004425 at 955.749 kb on + strand at 955.754 kb on - strand at 955.764 kb on - strand at 955.766 kb on - strand at 955.776 kb on + strand at 955.776 kb on + strand at 955.776 kb on + strand at 955.784 kb on + strand at 955.784 kb on - strand at 955.784 kb on - strand at 955.801 kb on + strand at 955.807 kb on + strand at 955.809 kb on - strand at 955.825 kb on + strand at 955.825 kb on + strand at 955.827 kb on - strand at 955.881 kb on - strand at 955.914 kb on + strand, within TX73_004430 at 955.914 kb on + strand, within TX73_004430 at 955.920 kb on + strand, within TX73_004430 at 955.922 kb on - strand, within TX73_004430 at 955.953 kb on + strand, within TX73_004430 at 955.970 kb on + strand, within TX73_004430 at 955.970 kb on + strand, within TX73_004430 at 955.978 kb on - strand, within TX73_004430 at 955.978 kb on - strand, within TX73_004430 at 955.992 kb on + strand, within TX73_004430 at 955.992 kb on + strand, within TX73_004430 at 956.000 kb on - strand, within TX73_004430 at 956.006 kb on + strand, within TX73_004430 at 956.006 kb on + strand, within TX73_004430 at 956.007 kb on + strand, within TX73_004430 at 956.007 kb on + strand, within TX73_004430 at 956.007 kb on + strand, within TX73_004430 at 956.008 kb on + strand, within TX73_004430 at 956.014 kb on - strand, within TX73_004430 at 956.015 kb on - strand, within TX73_004430 at 956.027 kb on + strand, within TX73_004430 at 956.081 kb on - strand, within TX73_004430 at 956.085 kb on - strand, within TX73_004430 at 956.102 kb on - strand, within TX73_004430 at 956.154 kb on + strand, within TX73_004430 at 956.178 kb on + strand, within TX73_004430 at 956.178 kb on + strand, within TX73_004430 at 956.217 kb on - strand, within TX73_004430 at 956.217 kb on - strand, within TX73_004430 at 956.217 kb on - strand, within TX73_004430 at 956.217 kb on - strand, within TX73_004430 at 956.234 kb on - strand, within TX73_004430 at 956.242 kb on - strand, within TX73_004430 at 956.242 kb on - strand, within TX73_004430 at 956.260 kb on + strand, within TX73_004430 at 956.318 kb on + strand, within TX73_004430 at 956.346 kb on - strand, within TX73_004430 at 956.354 kb on + strand, within TX73_004430 at 956.375 kb on - strand, within TX73_004430 at 956.395 kb on + strand, within TX73_004430 at 956.403 kb on + strand, within TX73_004430 at 956.411 kb on - strand, within TX73_004430 at 956.437 kb on - strand, within TX73_004430 at 956.489 kb on + strand, within TX73_004430 at 956.509 kb on + strand, within TX73_004430 at 956.517 kb on - strand, within TX73_004430 at 956.517 kb on - strand, within TX73_004430 at 956.522 kb on + strand, within TX73_004430 at 956.543 kb on + strand, within TX73_004430 at 956.551 kb on - strand, within TX73_004430 at 956.552 kb on + strand, within TX73_004430 at 956.561 kb on + strand, within TX73_004430 at 956.566 kb on + strand, within TX73_004430 at 956.567 kb on + strand, within TX73_004430 at 956.587 kb on - strand, within TX73_004430 at 956.600 kb on + strand at 956.603 kb on - strand at 956.608 kb on - strand at 956.618 kb on + strand at 956.621 kb on - strand at 956.626 kb on - strand at 956.666 kb on + strand at 956.678 kb on + strand at 956.686 kb on + strand at 956.691 kb on + strand at 956.701 kb on + strand at 956.714 kb on + strand at 956.722 kb on - strand at 956.752 kb on - strand at 956.752 kb on - strand at 956.756 kb on + strand at 956.765 kb on - strand at 956.767 kb on - strand at 956.827 kb on + strand, within TX73_004435 at 956.838 kb on + strand, within TX73_004435 at 956.838 kb on + strand, within TX73_004435 at 956.864 kb on + strand, within TX73_004435 at 956.865 kb on - strand, within TX73_004435 at 956.865 kb on - strand, within TX73_004435 at 956.870 kb on - strand, within TX73_004435 at 956.870 kb on - strand, within TX73_004435 at 956.872 kb on - strand, within TX73_004435 at 956.872 kb on - strand, within TX73_004435 at 956.874 kb on + strand, within TX73_004435 at 956.933 kb on + strand, within TX73_004435 at 956.935 kb on + strand, within TX73_004435 at 956.959 kb on + strand, within TX73_004435 at 956.959 kb on + strand, within TX73_004435 at 956.959 kb on + strand, within TX73_004435 at 956.959 kb on + strand, within TX73_004435 at 956.967 kb on - strand, within TX73_004435 at 956.985 kb on + strand, within TX73_004435 at 956.994 kb on - strand, within TX73_004435 at 956.994 kb on - strand, within TX73_004435 at 957.003 kb on + strand, within TX73_004435 at 957.013 kb on - strand, within TX73_004435 at 957.013 kb on - strand, within TX73_004435 at 957.042 kb on + strand, within TX73_004435 at 957.050 kb on - strand, within TX73_004435 at 957.060 kb on - strand, within TX73_004435 at 957.060 kb on - strand, within TX73_004435 at 957.071 kb on - strand, within TX73_004435 at 957.076 kb on + strand, within TX73_004435 at 957.095 kb on + strand, within TX73_004435 at 957.155 kb on + strand, within TX73_004435 at 957.183 kb on + strand, within TX73_004435 at 957.220 kb on + strand, within TX73_004435 at 957.220 kb on - strand, within TX73_004435 at 957.266 kb on - strand, within TX73_004435 at 957.275 kb on + strand, within TX73_004435 at 957.288 kb on - strand, within TX73_004435 at 957.443 kb on + strand, within TX73_004435 at 957.468 kb on + strand, within TX73_004435 at 957.468 kb on - strand, within TX73_004435 at 957.476 kb on - strand, within TX73_004435 at 957.476 kb on - strand, within TX73_004435 at 957.493 kb on + strand, within TX73_004435 at 957.516 kb on - strand at 957.551 kb on + strand at 957.572 kb on + strand at 957.580 kb on + strand at 957.583 kb on - strand at 957.607 kb on - strand at 957.620 kb on + strand at 957.634 kb on - strand at 957.639 kb on - strand at 957.692 kb on + strand at 957.692 kb on + strand at 957.700 kb on - strand at 957.700 kb on - strand at 957.730 kb on - strand at 957.747 kb on + strand at 957.757 kb on - strand at 957.768 kb on - strand at 957.825 kb on - strand at 957.833 kb on - strand at 957.835 kb on - strand at 957.835 kb on - strand at 957.893 kb on + strand, within TX73_004440 at 957.904 kb on + strand, within TX73_004440 at 957.912 kb on - strand, within TX73_004440 at 957.962 kb on + strand, within TX73_004440 at 957.970 kb on - strand, within TX73_004440 at 957.972 kb on + strand, within TX73_004440 at 957.972 kb on + strand, within TX73_004440 at 957.972 kb on - strand, within TX73_004440 at 957.975 kb on - strand, within TX73_004440 at 958.013 kb on + strand, within TX73_004440 at 958.077 kb on + strand, within TX73_004440 at 958.085 kb on - strand, within TX73_004440 at 958.106 kb on + strand, within TX73_004440 at 958.112 kb on - strand, within TX73_004440 at 958.112 kb on - strand, within TX73_004440 at 958.131 kb on + strand, within TX73_004440 at 958.139 kb on - strand, within TX73_004440 at 958.139 kb on - strand, within TX73_004440 at 958.158 kb on - strand, within TX73_004440 at 958.169 kb on + strand, within TX73_004440 at 958.177 kb on - strand, within TX73_004440 at 958.177 kb on - strand, within TX73_004440 at 958.274 kb on - strand, within TX73_004440 at 958.295 kb on - strand, within TX73_004440 at 958.307 kb on + strand, within TX73_004440 at 958.315 kb on - strand, within TX73_004440 at 958.330 kb on - strand, within TX73_004440 at 958.332 kb on - strand, within TX73_004440 at 958.344 kb on + strand, within TX73_004440 at 958.344 kb on + strand, within TX73_004440 at 958.400 kb on + strand, within TX73_004440 at 958.408 kb on + strand, within TX73_004440 at 958.431 kb on + strand, within TX73_004440 at 958.439 kb on - strand, within TX73_004440 at 958.483 kb on + strand, within TX73_004440 at 958.531 kb on + strand, within TX73_004440 at 958.531 kb on - strand, within TX73_004440 at 958.556 kb on + strand, within TX73_004440 at 958.581 kb on + strand, within TX73_004440 at 958.588 kb on - strand, within TX73_004440 at 958.594 kb on - strand, within TX73_004440
Per-strain Table
Position Strand Gene LocusTag Fraction aspen wood chips that have been decomposed by a fungus (C) remove 955,699 - TX73_004425 0.86 -0.3 955,703 + TX73_004425 0.86 -0.4 955,711 + TX73_004425 0.87 -0.9 955,713 - TX73_004425 0.87 +1.4 955,731 + TX73_004425 0.90 +0.6 955,749 + -0.5 955,754 - -0.5 955,764 - -0.4 955,766 - +0.5 955,776 + -1.2 955,776 + -1.3 955,776 + -1.8 955,784 + +0.1 955,784 - +0.9 955,784 - +0.8 955,801 + -0.0 955,807 + -1.8 955,809 - -1.2 955,825 + +0.2 955,825 + -0.5 955,827 - -0.6 955,881 - +0.5 955,914 + TX73_004430 0.11 -1.6 955,914 + TX73_004430 0.11 -0.1 955,920 + TX73_004430 0.12 -0.5 955,922 - TX73_004430 0.12 -1.8 955,953 + TX73_004430 0.16 +2.5 955,970 + TX73_004430 0.18 -1.2 955,970 + TX73_004430 0.18 -0.5 955,978 - TX73_004430 0.19 +0.2 955,978 - TX73_004430 0.19 -1.3 955,992 + TX73_004430 0.20 -0.5 955,992 + TX73_004430 0.20 -1.9 956,000 - TX73_004430 0.21 +1.8 956,006 + TX73_004430 0.22 -1.1 956,006 + TX73_004430 0.22 -0.5 956,007 + TX73_004430 0.22 -0.1 956,007 + TX73_004430 0.22 -0.8 956,007 + TX73_004430 0.22 +1.3 956,008 + TX73_004430 0.22 -1.5 956,014 - TX73_004430 0.23 -1.3 956,015 - TX73_004430 0.23 -1.1 956,027 + TX73_004430 0.24 +0.9 956,081 - TX73_004430 0.31 +1.5 956,085 - TX73_004430 0.31 -1.2 956,102 - TX73_004430 0.33 +1.9 956,154 + TX73_004430 0.39 -1.1 956,178 + TX73_004430 0.42 -1.6 956,178 + TX73_004430 0.42 -0.6 956,217 - TX73_004430 0.46 -0.9 956,217 - TX73_004430 0.46 -0.1 956,217 - TX73_004430 0.46 -1.6 956,217 - TX73_004430 0.46 +0.2 956,234 - TX73_004430 0.48 -1.5 956,242 - TX73_004430 0.49 -0.3 956,242 - TX73_004430 0.49 -1.3 956,260 + TX73_004430 0.51 -0.8 956,318 + TX73_004430 0.58 -0.3 956,346 - TX73_004430 0.61 -0.3 956,354 + TX73_004430 0.62 -2.1 956,375 - TX73_004430 0.64 +0.5 956,395 + TX73_004430 0.67 +0.5 956,403 + TX73_004430 0.68 -0.1 956,411 - TX73_004430 0.69 -0.3 956,437 - TX73_004430 0.72 -1.2 956,489 + TX73_004430 0.78 -0.9 956,509 + TX73_004430 0.80 +0.2 956,517 - TX73_004430 0.81 -1.1 956,517 - TX73_004430 0.81 +2.5 956,522 + TX73_004430 0.81 +1.5 956,543 + TX73_004430 0.84 -1.8 956,551 - TX73_004430 0.85 +0.2 956,552 + TX73_004430 0.85 +1.5 956,561 + TX73_004430 0.86 -1.6 956,566 + TX73_004430 0.86 +4.1 956,567 + TX73_004430 0.87 -0.8 956,587 - TX73_004430 0.89 +0.2 956,600 + +0.2 956,603 - -0.6 956,608 - +0.9 956,618 + -1.4 956,621 - +0.6 956,626 - -0.2 956,666 + -1.4 956,678 + +1.9 956,686 + -0.6 956,691 + +0.9 956,701 + +0.2 956,714 + -1.4 956,722 - -1.5 956,752 - -0.3 956,752 - -1.5 956,756 + -1.3 956,765 - -1.6 956,767 - +0.2 956,827 + TX73_004435 0.15 -1.4 956,838 + TX73_004435 0.16 -2.2 956,838 + TX73_004435 0.16 -1.0 956,864 + TX73_004435 0.19 -1.1 956,865 - TX73_004435 0.19 -0.5 956,865 - TX73_004435 0.19 -1.7 956,870 - TX73_004435 0.20 -0.8 956,870 - TX73_004435 0.20 +0.9 956,872 - TX73_004435 0.20 -0.1 956,872 - TX73_004435 0.20 -1.4 956,874 + TX73_004435 0.20 -1.2 956,933 + TX73_004435 0.27 -1.1 956,935 + TX73_004435 0.27 -0.5 956,959 + TX73_004435 0.29 -1.8 956,959 + TX73_004435 0.29 -0.9 956,959 + TX73_004435 0.29 -1.3 956,959 + TX73_004435 0.29 -1.7 956,967 - TX73_004435 0.30 -2.3 956,985 + TX73_004435 0.32 -1.8 956,994 - TX73_004435 0.33 +0.9 956,994 - TX73_004435 0.33 -1.2 957,003 + TX73_004435 0.34 +1.2 957,013 - TX73_004435 0.35 -0.6 957,013 - TX73_004435 0.35 -0.3 957,042 + TX73_004435 0.38 -0.3 957,050 - TX73_004435 0.39 -0.1 957,060 - TX73_004435 0.40 +2.5 957,060 - TX73_004435 0.40 -1.3 957,071 - TX73_004435 0.42 +2.1 957,076 + TX73_004435 0.42 -0.5 957,095 + TX73_004435 0.44 -0.3 957,155 + TX73_004435 0.51 -1.6 957,183 + TX73_004435 0.54 -0.8 957,220 + TX73_004435 0.58 +0.4 957,220 - TX73_004435 0.58 +5.1 957,266 - TX73_004435 0.63 -0.9 957,275 + TX73_004435 0.64 -1.4 957,288 - TX73_004435 0.65 -0.6 957,443 + TX73_004435 0.82 -1.1 957,468 + TX73_004435 0.85 -1.1 957,468 - TX73_004435 0.85 -0.8 957,476 - TX73_004435 0.86 +1.3 957,476 - TX73_004435 0.86 +0.1 957,493 + TX73_004435 0.88 -1.2 957,516 - -0.9 957,551 + -0.3 957,572 + +0.2 957,580 + +0.9 957,583 - +0.3 957,607 - -0.8 957,620 + -0.6 957,634 - +2.6 957,639 - -0.1 957,692 + -1.6 957,692 + -0.7 957,700 - -0.5 957,700 - +0.3 957,730 - -0.2 957,747 + -1.1 957,757 - -0.6 957,768 - -1.2 957,825 - +0.4 957,833 - -0.3 957,835 - -0.1 957,835 - -0.4 957,893 + TX73_004440 0.13 +2.1 957,904 + TX73_004440 0.14 -0.2 957,912 - TX73_004440 0.15 -0.9 957,962 + TX73_004440 0.20 -0.0 957,970 - TX73_004440 0.21 +2.2 957,972 + TX73_004440 0.21 +1.0 957,972 + TX73_004440 0.21 -0.3 957,972 - TX73_004440 0.21 -0.8 957,975 - TX73_004440 0.21 +0.8 958,013 + TX73_004440 0.25 -1.7 958,077 + TX73_004440 0.31 -0.8 958,085 - TX73_004440 0.32 +0.2 958,106 + TX73_004440 0.34 +1.5 958,112 - TX73_004440 0.34 +0.5 958,112 - TX73_004440 0.34 +1.2 958,131 + TX73_004440 0.36 -0.1 958,139 - TX73_004440 0.37 -0.5 958,139 - TX73_004440 0.37 +0.7 958,158 - TX73_004440 0.39 +0.4 958,169 + TX73_004440 0.40 -1.5 958,177 - TX73_004440 0.40 -0.0 958,177 - TX73_004440 0.40 -0.4 958,274 - TX73_004440 0.50 -0.6 958,295 - TX73_004440 0.52 -0.3 958,307 + TX73_004440 0.53 -0.1 958,315 - TX73_004440 0.54 +0.5 958,330 - TX73_004440 0.55 +0.1 958,332 - TX73_004440 0.55 +0.5 958,344 + TX73_004440 0.56 +1.5 958,344 + TX73_004440 0.56 -0.9 958,400 + TX73_004440 0.62 -0.1 958,408 + TX73_004440 0.62 -0.1 958,431 + TX73_004440 0.65 +0.8 958,439 - TX73_004440 0.65 +0.1 958,483 + TX73_004440 0.70 -0.7 958,531 + TX73_004440 0.74 -0.5 958,531 - TX73_004440 0.74 -1.4 958,556 + TX73_004440 0.76 +0.0 958,581 + TX73_004440 0.79 -2.4 958,588 - TX73_004440 0.80 +1.1 958,594 - TX73_004440 0.80 +0.9
Or see this region's nucleotide sequence