Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002035

Experiment: aspen wood chips that have been decomposed by a fungus (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002030 and TX73_002035 are separated by 14 nucleotidesTX73_002035 and TX73_002040 are separated by 241 nucleotides TX73_002030: TX73_002030 - EAL domain-containing protein, at 427,490 to 429,727 _002030 TX73_002035: TX73_002035 - alkaline phosphatase, at 429,742 to 431,499 _002035 TX73_002040: TX73_002040 - argininosuccinate synthase, at 431,741 to 433,078 _002040 Position (kb) 429 430 431 432Strain fitness (log2 ratio) -3 -2 -1 0 1at 428.762 kb on - strand, within TX73_002030at 428.856 kb on + strand, within TX73_002030at 428.884 kb on - strand, within TX73_002030at 428.886 kb on + strand, within TX73_002030at 428.934 kb on + strand, within TX73_002030at 428.937 kb on - strand, within TX73_002030at 429.021 kb on - strand, within TX73_002030at 429.092 kb on + strand, within TX73_002030at 429.099 kb on + strand, within TX73_002030at 429.148 kb on + strand, within TX73_002030at 429.234 kb on - strand, within TX73_002030at 429.316 kb on - strand, within TX73_002030at 429.362 kb on - strand, within TX73_002030at 429.362 kb on - strand, within TX73_002030at 429.467 kb on - strand, within TX73_002030at 429.569 kb on + strandat 429.595 kb on + strandat 429.605 kb on + strandat 429.605 kb on + strandat 429.663 kb on + strandat 429.721 kb on + strandat 429.722 kb on + strandat 429.729 kb on - strandat 429.730 kb on - strandat 429.792 kb on + strandat 429.834 kb on + strandat 429.915 kb on - strandat 429.915 kb on - strandat 429.920 kb on - strand, within TX73_002035at 429.929 kb on + strand, within TX73_002035at 429.929 kb on + strand, within TX73_002035at 429.937 kb on - strand, within TX73_002035at 429.937 kb on - strand, within TX73_002035at 429.964 kb on - strand, within TX73_002035at 430.024 kb on - strand, within TX73_002035at 430.029 kb on + strand, within TX73_002035at 430.162 kb on + strand, within TX73_002035at 430.169 kb on + strand, within TX73_002035at 430.201 kb on - strand, within TX73_002035at 430.238 kb on - strand, within TX73_002035at 430.240 kb on - strand, within TX73_002035at 430.277 kb on + strand, within TX73_002035at 430.294 kb on + strand, within TX73_002035at 430.297 kb on - strand, within TX73_002035at 430.309 kb on + strand, within TX73_002035at 430.327 kb on - strand, within TX73_002035at 430.367 kb on - strand, within TX73_002035at 430.432 kb on + strand, within TX73_002035at 430.437 kb on + strand, within TX73_002035at 430.445 kb on - strand, within TX73_002035at 430.446 kb on + strand, within TX73_002035at 430.507 kb on - strand, within TX73_002035at 430.533 kb on + strand, within TX73_002035at 430.550 kb on - strand, within TX73_002035at 430.555 kb on - strand, within TX73_002035at 430.555 kb on - strand, within TX73_002035at 430.684 kb on + strand, within TX73_002035at 430.706 kb on + strand, within TX73_002035at 430.706 kb on + strand, within TX73_002035at 430.714 kb on - strand, within TX73_002035at 430.714 kb on - strand, within TX73_002035at 430.714 kb on - strand, within TX73_002035at 430.714 kb on - strand, within TX73_002035at 430.714 kb on - strand, within TX73_002035at 430.714 kb on - strand, within TX73_002035at 430.729 kb on + strand, within TX73_002035at 430.737 kb on - strand, within TX73_002035at 430.758 kb on - strand, within TX73_002035at 430.828 kb on + strand, within TX73_002035at 430.864 kb on - strand, within TX73_002035at 430.883 kb on - strand, within TX73_002035at 430.883 kb on - strand, within TX73_002035at 430.883 kb on - strand, within TX73_002035at 430.883 kb on - strand, within TX73_002035at 430.900 kb on - strand, within TX73_002035at 430.964 kb on + strand, within TX73_002035at 430.971 kb on - strand, within TX73_002035at 430.996 kb on - strand, within TX73_002035at 431.068 kb on + strand, within TX73_002035at 431.142 kb on + strand, within TX73_002035at 431.142 kb on + strand, within TX73_002035at 431.147 kb on + strand, within TX73_002035at 431.149 kb on + strand, within TX73_002035at 431.149 kb on + strand, within TX73_002035at 431.149 kb on + strand, within TX73_002035at 431.149 kb on + strand, within TX73_002035at 431.149 kb on + strand, within TX73_002035at 431.149 kb on + strand, within TX73_002035at 431.155 kb on - strand, within TX73_002035at 431.155 kb on - strand, within TX73_002035at 431.157 kb on - strand, within TX73_002035at 431.157 kb on - strand, within TX73_002035at 431.157 kb on - strand, within TX73_002035at 431.157 kb on - strand, within TX73_002035at 431.159 kb on + strand, within TX73_002035at 431.201 kb on + strand, within TX73_002035at 431.221 kb on + strand, within TX73_002035at 431.234 kb on - strand, within TX73_002035at 431.257 kb on + strand, within TX73_002035at 431.504 kb on - strandat 431.513 kb on - strandat 431.524 kb on - strandat 431.530 kb on - strandat 431.538 kb on + strandat 431.567 kb on + strandat 431.655 kb on + strandat 431.660 kb on + strandat 431.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction aspen wood chips that have been decomposed by a fungus (C)
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428,762 - TX73_002030 0.57 -1.5
428,856 + TX73_002030 0.61 +0.7
428,884 - TX73_002030 0.62 -0.2
428,886 + TX73_002030 0.62 -0.9
428,934 + TX73_002030 0.65 +0.6
428,937 - TX73_002030 0.65 +1.1
429,021 - TX73_002030 0.68 -0.1
429,092 + TX73_002030 0.72 -0.8
429,099 + TX73_002030 0.72 -0.3
429,148 + TX73_002030 0.74 -2.0
429,234 - TX73_002030 0.78 -0.9
429,316 - TX73_002030 0.82 -1.2
429,362 - TX73_002030 0.84 +0.0
429,362 - TX73_002030 0.84 -1.4
429,467 - TX73_002030 0.88 +0.1
429,569 + -0.6
429,595 + -1.8
429,605 + -0.5
429,605 + +0.4
429,663 + +0.7
429,721 + -0.3
429,722 + +0.6
429,729 - -1.2
429,730 - -0.4
429,792 + -3.0
429,834 + -0.3
429,915 - -0.2
429,915 - +0.8
429,920 - TX73_002035 0.10 -0.1
429,929 + TX73_002035 0.11 -1.1
429,929 + TX73_002035 0.11 -2.5
429,937 - TX73_002035 0.11 +0.6
429,937 - TX73_002035 0.11 -1.7
429,964 - TX73_002035 0.13 -0.6
430,024 - TX73_002035 0.16 -0.5
430,029 + TX73_002035 0.16 +0.0
430,162 + TX73_002035 0.24 -0.2
430,169 + TX73_002035 0.24 +0.3
430,201 - TX73_002035 0.26 +0.2
430,238 - TX73_002035 0.28 -1.3
430,240 - TX73_002035 0.28 -0.0
430,277 + TX73_002035 0.30 -0.0
430,294 + TX73_002035 0.31 -0.5
430,297 - TX73_002035 0.32 +0.2
430,309 + TX73_002035 0.32 -0.9
430,327 - TX73_002035 0.33 -1.0
430,367 - TX73_002035 0.36 +0.4
430,432 + TX73_002035 0.39 -0.2
430,437 + TX73_002035 0.40 +0.5
430,445 - TX73_002035 0.40 +0.8
430,446 + TX73_002035 0.40 +0.5
430,507 - TX73_002035 0.44 -0.4
430,533 + TX73_002035 0.45 -1.1
430,550 - TX73_002035 0.46 +0.9
430,555 - TX73_002035 0.46 -0.6
430,555 - TX73_002035 0.46 +0.3
430,684 + TX73_002035 0.54 +0.0
430,706 + TX73_002035 0.55 +0.3
430,706 + TX73_002035 0.55 -0.4
430,714 - TX73_002035 0.55 -1.3
430,714 - TX73_002035 0.55 +0.4
430,714 - TX73_002035 0.55 -0.2
430,714 - TX73_002035 0.55 -0.8
430,714 - TX73_002035 0.55 -0.3
430,714 - TX73_002035 0.55 -0.4
430,729 + TX73_002035 0.56 +0.2
430,737 - TX73_002035 0.57 +0.0
430,758 - TX73_002035 0.58 -0.7
430,828 + TX73_002035 0.62 +1.6
430,864 - TX73_002035 0.64 -0.9
430,883 - TX73_002035 0.65 -2.4
430,883 - TX73_002035 0.65 -1.3
430,883 - TX73_002035 0.65 -0.1
430,883 - TX73_002035 0.65 -0.6
430,900 - TX73_002035 0.66 +0.5
430,964 + TX73_002035 0.70 +0.8
430,971 - TX73_002035 0.70 -0.1
430,996 - TX73_002035 0.71 +0.7
431,068 + TX73_002035 0.75 +1.2
431,142 + TX73_002035 0.80 -0.4
431,142 + TX73_002035 0.80 -0.8
431,147 + TX73_002035 0.80 -0.0
431,149 + TX73_002035 0.80 -0.2
431,149 + TX73_002035 0.80 +0.8
431,149 + TX73_002035 0.80 -0.2
431,149 + TX73_002035 0.80 -0.9
431,149 + TX73_002035 0.80 -0.2
431,149 + TX73_002035 0.80 -0.6
431,155 - TX73_002035 0.80 -1.7
431,155 - TX73_002035 0.80 -0.1
431,157 - TX73_002035 0.80 -0.1
431,157 - TX73_002035 0.80 -2.4
431,157 - TX73_002035 0.80 +0.7
431,157 - TX73_002035 0.80 -0.2
431,159 + TX73_002035 0.81 +0.0
431,201 + TX73_002035 0.83 +0.7
431,221 + TX73_002035 0.84 +0.6
431,234 - TX73_002035 0.85 +0.6
431,257 + TX73_002035 0.86 +0.2
431,504 - -1.0
431,513 - -3.6
431,524 - +1.2
431,530 - -1.4
431,538 + +0.3
431,567 + +0.4
431,655 + -2.4
431,660 + +1.4
431,797 - -0.3

Or see this region's nucleotide sequence