Experiment: Pectin from citrus peel (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15690 and HMPREF1058_RS15685 are separated by 177 nucleotides HMPREF1058_RS15685 and HMPREF1058_RS15680 are separated by 19 nucleotides
HMPREF1058_RS15690: HMPREF1058_RS15690 - ATP-binding cassette domain-containing protein, at 855,577 to 857,196
_RS15690
HMPREF1058_RS15685: HMPREF1058_RS15685 - nucleotide exchange factor GrpE, at 857,374 to 857,994
_RS15685
HMPREF1058_RS15680: HMPREF1058_RS15680 - molecular chaperone DnaJ, at 858,014 to 859,189
_RS15680
Position (kb) 857
858 Strain fitness (log2 ratio) -2
-1
0
1 at 856.488 kb on - strand, within HMPREF1058_RS15690 at 856.528 kb on + strand, within HMPREF1058_RS15690 at 856.529 kb on - strand, within HMPREF1058_RS15690 at 856.529 kb on - strand, within HMPREF1058_RS15690 at 856.529 kb on - strand, within HMPREF1058_RS15690 at 856.534 kb on - strand, within HMPREF1058_RS15690 at 856.540 kb on - strand, within HMPREF1058_RS15690 at 856.746 kb on + strand, within HMPREF1058_RS15690 at 856.746 kb on + strand, within HMPREF1058_RS15690 at 856.746 kb on + strand, within HMPREF1058_RS15690 at 856.747 kb on - strand, within HMPREF1058_RS15690 at 856.748 kb on + strand, within HMPREF1058_RS15690 at 856.749 kb on - strand, within HMPREF1058_RS15690 at 856.766 kb on - strand, within HMPREF1058_RS15690 at 856.911 kb on + strand, within HMPREF1058_RS15690 at 856.930 kb on - strand, within HMPREF1058_RS15690 at 856.930 kb on - strand, within HMPREF1058_RS15690 at 856.942 kb on - strand, within HMPREF1058_RS15690 at 856.959 kb on + strand, within HMPREF1058_RS15690 at 856.959 kb on + strand, within HMPREF1058_RS15690 at 856.960 kb on - strand, within HMPREF1058_RS15690 at 857.134 kb on - strand at 857.147 kb on + strand at 857.148 kb on - strand at 857.199 kb on + strand at 857.200 kb on - strand at 857.202 kb on + strand at 857.203 kb on - strand at 857.217 kb on + strand at 857.218 kb on - strand at 858.005 kb on + strand at 858.277 kb on + strand, within HMPREF1058_RS15680 at 858.480 kb on + strand, within HMPREF1058_RS15680
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel (C) remove 856,488 - HMPREF1058_RS15690 0.56 -1.7 856,528 + HMPREF1058_RS15690 0.59 +0.4 856,529 - HMPREF1058_RS15690 0.59 +0.7 856,529 - HMPREF1058_RS15690 0.59 -1.1 856,529 - HMPREF1058_RS15690 0.59 +0.1 856,534 - HMPREF1058_RS15690 0.59 -1.0 856,540 - HMPREF1058_RS15690 0.59 +1.1 856,746 + HMPREF1058_RS15690 0.72 -0.6 856,746 + HMPREF1058_RS15690 0.72 +0.5 856,746 + HMPREF1058_RS15690 0.72 -1.4 856,747 - HMPREF1058_RS15690 0.72 -0.3 856,748 + HMPREF1058_RS15690 0.72 -1.4 856,749 - HMPREF1058_RS15690 0.72 +0.2 856,766 - HMPREF1058_RS15690 0.73 -0.2 856,911 + HMPREF1058_RS15690 0.82 -1.8 856,930 - HMPREF1058_RS15690 0.84 -0.1 856,930 - HMPREF1058_RS15690 0.84 -1.3 856,942 - HMPREF1058_RS15690 0.84 +0.4 856,959 + HMPREF1058_RS15690 0.85 -1.0 856,959 + HMPREF1058_RS15690 0.85 +1.1 856,960 - HMPREF1058_RS15690 0.85 +0.2 857,134 - +0.1 857,147 + +0.2 857,148 - +1.1 857,199 + +0.2 857,200 - -0.5 857,202 + +0.1 857,203 - +1.5 857,217 + -0.9 857,218 - -1.9 858,005 + -0.3 858,277 + HMPREF1058_RS15680 0.22 -2.3 858,480 + HMPREF1058_RS15680 0.40 -1.8
Or see this region's nucleotide sequence