Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011140

Experiment: aspen wood chips that have been decomposed by a fungus (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aspen wood chips that have been decomposed by a fungus (C)
2,430,474	+				-0.2
2,430,481	+				-1.3
2,430,482	-				+0.0
2,430,508	+				-0.8
2,430,552	+				-0.3
2,430,560	-				-1.2
2,430,590	+				-2.0
2,430,590	+				-0.8
2,430,590	+				-0.3
2,430,590	+				+0.3
2,430,591	-				-0.3
2,430,591	-				-0.2
2,430,597	-				-0.4
2,430,598	-				-0.3
2,430,600	+				-2.1
2,430,604	+				-0.1
2,430,654	+		TX73_011130	0.21	-0.0
2,430,655	+		TX73_011130	0.21	+0.7
2,430,655	+		TX73_011130	0.21	+0.4
2,430,660	+		TX73_011130	0.22	-0.9
2,430,662	-		TX73_011130	0.23	+0.1
2,430,665	+		TX73_011130	0.24	+0.3
2,430,668	-		TX73_011130	0.25	-0.3
2,430,668	-		TX73_011130	0.25	+0.1
2,430,668	-		TX73_011130	0.25	-0.4
2,430,673	-		TX73_011130	0.26	+0.1
2,430,726	-		TX73_011130	0.42	+0.2
2,430,739	+		TX73_011130	0.46	-1.4
2,430,740	-		TX73_011130	0.47	+0.3
2,430,766	-		TX73_011130	0.55	+0.1
2,430,785	+		TX73_011130	0.60	-0.8
2,430,785	+		TX73_011130	0.60	-1.2
2,430,789	-		TX73_011130	0.62	+0.1
2,430,791	-		TX73_011130	0.62	+0.0
2,430,793	-		TX73_011130	0.63	-0.1
2,430,793	-		TX73_011130	0.63	-0.3
2,430,793	-		TX73_011130	0.63	-0.2
2,430,793	-		TX73_011130	0.63	+0.3
2,430,793	-		TX73_011130	0.63	-0.0
2,430,793	-		TX73_011130	0.63	-0.2
2,430,795	+		TX73_011130	0.63	+0.4
2,430,798	-		TX73_011130	0.64	+0.2
2,430,802	+		TX73_011130	0.65	+0.3
2,430,803	-		TX73_011130	0.66	+0.6
2,430,819	+		TX73_011130	0.71	-0.1
2,430,853	+		TX73_011130	0.81	-0.9
2,430,853	+		TX73_011130	0.81	+0.1
2,430,859	-		TX73_011130	0.83	+0.2
2,430,861	-		TX73_011130	0.83	-0.8
2,430,877	+		TX73_011130	0.88	-0.3
2,430,885	-				-0.6
2,430,890	-				+0.7
2,430,890	-				+0.3
2,430,899	+				-0.4
2,430,911	+				-0.0
2,430,933	+				-0.3
2,430,936	+				-0.0
2,430,951	+				+0.2
2,431,011	+				+0.1
2,431,019	-				-0.3
2,431,043	-				+0.3
2,431,044	+				-0.0
2,431,055	+		TX73_011135	0.11	-0.4
2,431,063	-		TX73_011135	0.15	-0.2
2,431,086	+		TX73_011135	0.24	-1.1
2,431,086	+		TX73_011135	0.24	-0.1
2,431,092	-		TX73_011135	0.26	-1.3
2,431,092	-		TX73_011135	0.26	+0.3
2,431,096	+		TX73_011135	0.27	-0.1
2,431,096	+		TX73_011135	0.27	+0.5
2,431,096	+		TX73_011135	0.27	+0.3
2,431,101	+		TX73_011135	0.29	-0.1
2,431,104	-		TX73_011135	0.31	+0.7
2,431,104	-		TX73_011135	0.31	+0.4
2,431,109	-		TX73_011135	0.33	-0.4
2,431,109	-		TX73_011135	0.33	+0.1
2,431,109	-		TX73_011135	0.33	-0.1
2,431,135	+		TX73_011135	0.43	+0.3
2,431,135	+		TX73_011135	0.43	-0.2
2,431,135	+		TX73_011135	0.43	+0.2
2,431,143	-		TX73_011135	0.46	-0.0
2,431,143	-		TX73_011135	0.46	+0.1
2,431,143	-		TX73_011135	0.46	-0.4
2,431,143	-		TX73_011135	0.46	+0.4
2,431,143	-		TX73_011135	0.46	+1.5
2,431,143	-		TX73_011135	0.46	-1.7
2,431,148	-		TX73_011135	0.48	-0.1
2,431,148	-		TX73_011135	0.48	-0.7
2,431,148	-		TX73_011135	0.48	-0.3
2,431,202	+		TX73_011135	0.69	-0.5
2,431,212	+		TX73_011135	0.73	-0.8
2,431,212	+		TX73_011135	0.73	-0.1
2,431,215	-		TX73_011135	0.74	+0.2
2,431,220	-		TX73_011135	0.76	+0.0
2,431,222	-		TX73_011135	0.77	+0.6
2,431,222	-		TX73_011135	0.77	-0.1
2,431,227	-		TX73_011135	0.79	-0.3
2,431,227	-		TX73_011135	0.79	+0.3
2,431,227	-		TX73_011135	0.79	+1.0
2,431,237	+		TX73_011135	0.83	+0.1
2,431,237	-		TX73_011135	0.83	+1.1
2,431,283	-				-0.1
2,431,284	+				-1.3
2,431,306	+				-0.7
2,431,306	-				-0.4
2,431,317	+				-1.1
2,431,403	+				-0.0
2,431,403	+				+0.8
2,431,403	+				+0.4
2,431,403	+				+0.1
2,431,411	-				+0.1
2,431,411	-				+0.4
2,431,411	-				+0.4
2,431,411	-				+0.7
2,431,411	-				-0.4
2,431,411	-				-1.0
2,431,418	+				+0.6
2,431,428	-				+0.4
2,431,448	-				+0.6
2,431,455	-				-0.0
2,431,467	+				+0.4
2,431,598	-		TX73_011140	0.18	+0.9
2,431,632	+		TX73_011140	0.22	+1.0
2,431,640	-		TX73_011140	0.23	+0.6
2,431,659	-		TX73_011140	0.26	+1.1
2,431,701	-		TX73_011140	0.31	+0.3
2,431,729	-		TX73_011140	0.35	+0.6
2,431,757	-		TX73_011140	0.39	-0.0
2,431,826	-		TX73_011140	0.48	-0.3
2,431,850	+		TX73_011140	0.51	-1.1
2,431,893	-		TX73_011140	0.57	+0.2
2,431,894	+		TX73_011140	0.57	+0.7
2,431,989	+		TX73_011140	0.70	+0.2
2,431,995	+		TX73_011140	0.71	+0.4
2,432,002	-		TX73_011140	0.71	-0.4
2,432,060	+		TX73_011140	0.79	-0.9
2,432,064	-		TX73_011140	0.80	-0.1
2,432,068	-		TX73_011140	0.80	-0.1
2,432,123	+		TX73_011140	0.88	-0.9
2,432,150	+				-0.6
2,432,157	+				+0.9
2,432,195	+				-0.6
2,432,203	-				-0.1
2,432,205	+				-1.8
2,432,238	+				-0.4
2,432,250	+				+0.7
2,432,301	+				+0.1
2,432,339	-				+1.1
2,432,398	-		TX73_011145	0.22	-1.3
2,432,426	+		TX73_011145	0.31	-0.3
2,432,426	+		TX73_011145	0.31	-0.2
2,432,447	+		TX73_011145	0.38	-1.0
2,432,450	-		TX73_011145	0.39	+0.1
2,432,469	+		TX73_011145	0.45	+1.6
2,432,512	-		TX73_011145	0.58	+0.1
2,432,546	+		TX73_011145	0.69	-0.8
2,432,559	-		TX73_011145	0.73	+0.2
2,432,569	-		TX73_011145	0.77	-1.0
2,432,569	-		TX73_011145	0.77	+0.8
2,432,588	-		TX73_011145	0.83	+0.3
2,432,609	+		TX73_011145	0.89	-0.1
2,432,609	+		TX73_011145	0.89	+0.5
2,432,609	+		TX73_011145	0.89	+0.0
2,432,617	-				-0.2
2,432,617	-				-0.6
2,432,617	-				-0.7
2,432,627	-				-0.9
2,432,663	-				+0.6
2,432,663	-				-0.4
2,432,670	-				-1.4
2,432,694	-				+0.2
2,432,701	-				-0.3
2,432,733	+				-0.2
2,432,741	-				-0.6
2,432,766	+		TX73_011150	0.11	+0.0
2,432,779	+		TX73_011150	0.14	+0.7
2,432,785	-		TX73_011150	0.16	+0.3
2,432,785	-		TX73_011150	0.16	-0.2
2,432,813	+		TX73_011150	0.23	-0.1
2,432,816	-		TX73_011150	0.24	+0.0
2,432,822	+		TX73_011150	0.25	+0.5
2,432,835	+		TX73_011150	0.29	+0.2
2,432,837	+		TX73_011150	0.29	-0.4
2,432,837	+		TX73_011150	0.29	-0.7
2,432,837	+		TX73_011150	0.29	-0.5
2,432,845	-		TX73_011150	0.31	-0.3
2,432,899	+		TX73_011150	0.46	-0.0
2,432,917	+		TX73_011150	0.50	+0.6
2,432,917	-		TX73_011150	0.50	-0.0
2,432,920	-		TX73_011150	0.51	-0.3
2,432,977	-		TX73_011150	0.66	-1.7
2,433,012	+		TX73_011150	0.75	-0.7
2,433,039	-		TX73_011150	0.82	-1.5
2,433,039	-		TX73_011150	0.82	-0.6
2,433,057	+		TX73_011150	0.87	-0.2
2,433,091	+				-0.5
2,433,092	-				-0.3
2,433,092	-				+0.1
2,433,119	+				-0.1
2,433,120	+				-0.0
2,433,159	-				-0.5
2,433,212	+				+0.8