Experiment: aspen wood chips that have been decomposed by a fungus (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_004360 and TX73_004365 are separated by 69 nucleotides TX73_004365 and TX73_004370 are separated by 302 nucleotides TX73_004370 and TX73_004375 are separated by 45 nucleotides TX73_004375 and TX73_004380 are separated by 23 nucleotides
TX73_004360: TX73_004360 - F0F1 ATP synthase subunit A, at 938,762 to 939,508
_004360
TX73_004365: TX73_004365 - AtpZ/AtpI family protein, at 939,578 to 939,964
_004365
TX73_004370: TX73_004370 - 2-hydroxychromene-2-carboxylate isomerase, at 940,267 to 940,890
_004370
TX73_004375: TX73_004375 - hypothetical protein, at 940,936 to 941,520
_004375
TX73_004380: TX73_004380 - secondary thiamine-phosphate synthase enzyme YjbQ, at 941,544 to 942,017
_004380
Position (kb) 940
941 Strain fitness (log2 ratio) -2
-1
0
1 at 939.603 kb on - strand at 939.680 kb on - strand, within TX73_004365 at 939.681 kb on - strand, within TX73_004365 at 940.134 kb on + strand at 940.140 kb on - strand at 940.140 kb on - strand at 940.142 kb on - strand at 940.186 kb on + strand at 940.191 kb on + strand at 940.191 kb on + strand at 940.194 kb on - strand at 940.196 kb on + strand at 940.199 kb on - strand at 940.199 kb on - strand at 940.204 kb on - strand at 940.204 kb on - strand at 940.211 kb on + strand at 940.237 kb on - strand at 940.262 kb on + strand at 940.262 kb on + strand at 940.270 kb on - strand at 940.270 kb on - strand at 940.270 kb on - strand at 940.282 kb on + strand at 940.298 kb on - strand at 940.314 kb on - strand at 940.316 kb on + strand at 940.324 kb on - strand at 940.326 kb on - strand at 940.344 kb on + strand, within TX73_004370 at 940.389 kb on - strand, within TX73_004370 at 940.391 kb on - strand, within TX73_004370 at 940.412 kb on + strand, within TX73_004370 at 940.433 kb on - strand, within TX73_004370 at 940.473 kb on - strand, within TX73_004370 at 940.476 kb on - strand, within TX73_004370 at 940.499 kb on + strand, within TX73_004370 at 940.509 kb on - strand, within TX73_004370 at 940.535 kb on - strand, within TX73_004370 at 940.542 kb on + strand, within TX73_004370 at 940.552 kb on + strand, within TX73_004370 at 940.572 kb on - strand, within TX73_004370 at 940.583 kb on + strand, within TX73_004370 at 940.584 kb on - strand, within TX73_004370 at 940.589 kb on + strand, within TX73_004370 at 940.602 kb on - strand, within TX73_004370 at 940.618 kb on + strand, within TX73_004370 at 940.618 kb on + strand, within TX73_004370 at 940.620 kb on + strand, within TX73_004370 at 940.626 kb on - strand, within TX73_004370 at 940.626 kb on - strand, within TX73_004370 at 940.626 kb on - strand, within TX73_004370 at 940.637 kb on + strand, within TX73_004370 at 940.663 kb on + strand, within TX73_004370 at 940.667 kb on - strand, within TX73_004370 at 940.691 kb on + strand, within TX73_004370 at 940.699 kb on - strand, within TX73_004370 at 940.710 kb on + strand, within TX73_004370 at 940.714 kb on - strand, within TX73_004370 at 940.718 kb on - strand, within TX73_004370 at 940.736 kb on + strand, within TX73_004370 at 940.736 kb on + strand, within TX73_004370 at 940.741 kb on + strand, within TX73_004370 at 940.805 kb on + strand, within TX73_004370 at 940.812 kb on + strand, within TX73_004370 at 940.820 kb on - strand, within TX73_004370 at 940.820 kb on - strand, within TX73_004370 at 940.829 kb on + strand at 940.832 kb on - strand at 940.837 kb on + strand at 940.839 kb on + strand at 940.872 kb on + strand at 940.884 kb on + strand at 940.918 kb on + strand at 940.930 kb on - strand at 940.938 kb on - strand at 940.940 kb on + strand at 940.959 kb on + strand at 940.959 kb on + strand at 940.959 kb on + strand at 941.037 kb on + strand, within TX73_004375 at 941.055 kb on - strand, within TX73_004375 at 941.078 kb on + strand, within TX73_004375 at 941.086 kb on - strand, within TX73_004375 at 941.107 kb on - strand, within TX73_004375 at 941.107 kb on - strand, within TX73_004375 at 941.131 kb on - strand, within TX73_004375 at 941.138 kb on - strand, within TX73_004375 at 941.138 kb on - strand, within TX73_004375 at 941.139 kb on - strand, within TX73_004375 at 941.141 kb on + strand, within TX73_004375 at 941.146 kb on + strand, within TX73_004375 at 941.146 kb on + strand, within TX73_004375 at 941.146 kb on + strand, within TX73_004375 at 941.146 kb on + strand, within TX73_004375 at 941.154 kb on - strand, within TX73_004375 at 941.154 kb on - strand, within TX73_004375 at 941.154 kb on - strand, within TX73_004375 at 941.154 kb on - strand, within TX73_004375 at 941.154 kb on - strand, within TX73_004375 at 941.154 kb on - strand, within TX73_004375 at 941.154 kb on - strand, within TX73_004375 at 941.154 kb on - strand, within TX73_004375 at 941.154 kb on - strand, within TX73_004375 at 941.154 kb on - strand, within TX73_004375 at 941.176 kb on - strand, within TX73_004375 at 941.217 kb on + strand, within TX73_004375 at 941.246 kb on - strand, within TX73_004375 at 941.269 kb on + strand, within TX73_004375 at 941.279 kb on + strand, within TX73_004375 at 941.295 kb on + strand, within TX73_004375 at 941.295 kb on + strand, within TX73_004375 at 941.303 kb on - strand, within TX73_004375 at 941.318 kb on - strand, within TX73_004375 at 941.337 kb on + strand, within TX73_004375 at 941.343 kb on - strand, within TX73_004375 at 941.433 kb on + strand, within TX73_004375 at 941.469 kb on + strand at 941.469 kb on + strand at 941.509 kb on + strand at 941.567 kb on - strand at 941.574 kb on + strand at 941.574 kb on + strand at 941.621 kb on - strand, within TX73_004380 at 941.630 kb on - strand, within TX73_004380 at 941.630 kb on - strand, within TX73_004380 at 941.630 kb on - strand, within TX73_004380 at 941.635 kb on + strand, within TX73_004380 at 941.635 kb on + strand, within TX73_004380 at 941.641 kb on + strand, within TX73_004380 at 941.672 kb on - strand, within TX73_004380 at 941.726 kb on + strand, within TX73_004380 at 941.728 kb on + strand, within TX73_004380 at 941.736 kb on - strand, within TX73_004380 at 941.736 kb on - strand, within TX73_004380 at 941.750 kb on + strand, within TX73_004380 at 941.790 kb on + strand, within TX73_004380 at 941.798 kb on - strand, within TX73_004380 at 941.798 kb on - strand, within TX73_004380 at 941.841 kb on + strand, within TX73_004380 at 941.855 kb on - strand, within TX73_004380 at 941.864 kb on + strand, within TX73_004380 at 941.864 kb on + strand, within TX73_004380 at 941.864 kb on + strand, within TX73_004380 at 941.872 kb on - strand, within TX73_004380 at 941.872 kb on - strand, within TX73_004380 at 941.872 kb on - strand, within TX73_004380 at 941.872 kb on - strand, within TX73_004380 at 941.874 kb on + strand, within TX73_004380 at 941.879 kb on + strand, within TX73_004380 at 941.881 kb on + strand, within TX73_004380
Per-strain Table
Position Strand Gene LocusTag Fraction aspen wood chips that have been decomposed by a fungus (C) remove 939,603 - -0.3 939,680 - TX73_004365 0.26 +1.5 939,681 - TX73_004365 0.27 -1.4 940,134 + -1.0 940,140 - -0.9 940,140 - -0.4 940,142 - -0.0 940,186 + +0.2 940,191 + -1.1 940,191 + -0.8 940,194 - -0.2 940,196 + -1.1 940,199 - -2.0 940,199 - +0.3 940,204 - +0.3 940,204 - +0.4 940,211 + -0.3 940,237 - +0.7 940,262 + +0.5 940,262 + -0.8 940,270 - +0.2 940,270 - +0.5 940,270 - -0.8 940,282 + -0.5 940,298 - +0.2 940,314 - -1.2 940,316 + +0.3 940,324 - -1.0 940,326 - +0.2 940,344 + TX73_004370 0.12 -0.4 940,389 - TX73_004370 0.20 -0.2 940,391 - TX73_004370 0.20 -0.2 940,412 + TX73_004370 0.23 -0.4 940,433 - TX73_004370 0.27 -0.5 940,473 - TX73_004370 0.33 -0.7 940,476 - TX73_004370 0.33 -0.5 940,499 + TX73_004370 0.37 -1.4 940,509 - TX73_004370 0.39 -1.3 940,535 - TX73_004370 0.43 +0.3 940,542 + TX73_004370 0.44 -0.2 940,552 + TX73_004370 0.46 -0.4 940,572 - TX73_004370 0.49 -0.1 940,583 + TX73_004370 0.51 +0.6 940,584 - TX73_004370 0.51 -0.6 940,589 + TX73_004370 0.52 +0.3 940,602 - TX73_004370 0.54 +0.2 940,618 + TX73_004370 0.56 -1.1 940,618 + TX73_004370 0.56 -0.4 940,620 + TX73_004370 0.57 +0.6 940,626 - TX73_004370 0.58 -0.7 940,626 - TX73_004370 0.58 -0.7 940,626 - TX73_004370 0.58 -0.2 940,637 + TX73_004370 0.59 +0.5 940,663 + TX73_004370 0.63 -0.2 940,667 - TX73_004370 0.64 -1.7 940,691 + TX73_004370 0.68 -0.5 940,699 - TX73_004370 0.69 +0.1 940,710 + TX73_004370 0.71 -0.6 940,714 - TX73_004370 0.72 -0.2 940,718 - TX73_004370 0.72 -0.3 940,736 + TX73_004370 0.75 +0.8 940,736 + TX73_004370 0.75 -0.3 940,741 + TX73_004370 0.76 -0.6 940,805 + TX73_004370 0.86 -0.3 940,812 + TX73_004370 0.87 -0.1 940,820 - TX73_004370 0.89 -0.3 940,820 - TX73_004370 0.89 -0.3 940,829 + +0.2 940,832 - +1.6 940,837 + -0.4 940,839 + +0.8 940,872 + -0.8 940,884 + +0.6 940,918 + -0.1 940,930 - +0.6 940,938 - +0.1 940,940 + -1.7 940,959 + -0.4 940,959 + -0.1 940,959 + -0.3 941,037 + TX73_004375 0.17 +0.8 941,055 - TX73_004375 0.20 +0.9 941,078 + TX73_004375 0.24 -0.4 941,086 - TX73_004375 0.26 +0.1 941,107 - TX73_004375 0.29 +0.3 941,107 - TX73_004375 0.29 -0.2 941,131 - TX73_004375 0.33 -0.3 941,138 - TX73_004375 0.35 -1.5 941,138 - TX73_004375 0.35 -0.4 941,139 - TX73_004375 0.35 +0.2 941,141 + TX73_004375 0.35 +0.0 941,146 + TX73_004375 0.36 -0.5 941,146 + TX73_004375 0.36 +0.2 941,146 + TX73_004375 0.36 -0.7 941,146 + TX73_004375 0.36 -0.4 941,154 - TX73_004375 0.37 -1.2 941,154 - TX73_004375 0.37 +0.3 941,154 - TX73_004375 0.37 +0.9 941,154 - TX73_004375 0.37 +0.1 941,154 - TX73_004375 0.37 -0.7 941,154 - TX73_004375 0.37 +0.7 941,154 - TX73_004375 0.37 -0.6 941,154 - TX73_004375 0.37 +0.2 941,154 - TX73_004375 0.37 +0.3 941,154 - TX73_004375 0.37 -0.0 941,176 - TX73_004375 0.41 +0.3 941,217 + TX73_004375 0.48 -0.4 941,246 - TX73_004375 0.53 -1.5 941,269 + TX73_004375 0.57 +0.1 941,279 + TX73_004375 0.59 +0.2 941,295 + TX73_004375 0.61 -0.9 941,295 + TX73_004375 0.61 +0.4 941,303 - TX73_004375 0.63 +0.0 941,318 - TX73_004375 0.65 +0.2 941,337 + TX73_004375 0.69 +0.0 941,343 - TX73_004375 0.70 +0.5 941,433 + TX73_004375 0.85 -0.1 941,469 + -0.6 941,469 + +0.1 941,509 + -0.4 941,567 - +0.6 941,574 + -0.1 941,574 + -0.7 941,621 - TX73_004380 0.16 +0.5 941,630 - TX73_004380 0.18 -0.1 941,630 - TX73_004380 0.18 -0.4 941,630 - TX73_004380 0.18 +0.8 941,635 + TX73_004380 0.19 -0.6 941,635 + TX73_004380 0.19 +1.3 941,641 + TX73_004380 0.20 -0.7 941,672 - TX73_004380 0.27 -0.4 941,726 + TX73_004380 0.38 -0.5 941,728 + TX73_004380 0.39 -0.3 941,736 - TX73_004380 0.41 -0.3 941,736 - TX73_004380 0.41 +0.8 941,750 + TX73_004380 0.43 -1.2 941,790 + TX73_004380 0.52 -0.3 941,798 - TX73_004380 0.54 -0.2 941,798 - TX73_004380 0.54 -0.3 941,841 + TX73_004380 0.63 +0.2 941,855 - TX73_004380 0.66 +0.0 941,864 + TX73_004380 0.68 -0.5 941,864 + TX73_004380 0.68 +1.2 941,864 + TX73_004380 0.68 -0.2 941,872 - TX73_004380 0.69 +0.9 941,872 - TX73_004380 0.69 -0.5 941,872 - TX73_004380 0.69 -0.2 941,872 - TX73_004380 0.69 +1.2 941,874 + TX73_004380 0.70 +0.6 941,879 + TX73_004380 0.71 +0.2 941,881 + TX73_004380 0.71 +0.1
Or see this region's nucleotide sequence