Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18135

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18140 and HMPREF1058_RS18135 overlap by 8 nucleotidesHMPREF1058_RS18135 and HMPREF1058_RS21395 are separated by 440 nucleotidesHMPREF1058_RS21395 and HMPREF1058_RS18130 are separated by 129 nucleotides HMPREF1058_RS18140: HMPREF1058_RS18140 - hypothetical protein, at 248,100 to 249,236 _RS18140 HMPREF1058_RS18135: HMPREF1058_RS18135 - hypothetical protein, at 249,229 to 249,939 _RS18135 HMPREF1058_RS21395: HMPREF1058_RS21395 - glycosyltransferase, at 250,380 to 250,804 _RS21395 HMPREF1058_RS18130: HMPREF1058_RS18130 - tRNA-Ser, at 250,934 to 251,020 _RS18130 Position (kb) 249 250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 248.257 kb on + strand, within HMPREF1058_RS18140at 248.268 kb on + strand, within HMPREF1058_RS18140at 248.269 kb on - strand, within HMPREF1058_RS18140at 248.275 kb on + strand, within HMPREF1058_RS18140at 248.283 kb on - strand, within HMPREF1058_RS18140at 248.297 kb on + strand, within HMPREF1058_RS18140at 248.297 kb on + strand, within HMPREF1058_RS18140at 248.298 kb on - strand, within HMPREF1058_RS18140at 248.386 kb on + strand, within HMPREF1058_RS18140at 248.414 kb on - strand, within HMPREF1058_RS18140at 248.433 kb on - strand, within HMPREF1058_RS18140at 248.440 kb on + strand, within HMPREF1058_RS18140at 248.441 kb on - strand, within HMPREF1058_RS18140at 248.467 kb on + strand, within HMPREF1058_RS18140at 248.468 kb on - strand, within HMPREF1058_RS18140at 248.468 kb on - strand, within HMPREF1058_RS18140at 248.473 kb on - strand, within HMPREF1058_RS18140at 248.489 kb on + strand, within HMPREF1058_RS18140at 248.520 kb on + strand, within HMPREF1058_RS18140at 248.521 kb on - strand, within HMPREF1058_RS18140at 248.592 kb on - strand, within HMPREF1058_RS18140at 248.592 kb on - strand, within HMPREF1058_RS18140at 248.594 kb on - strand, within HMPREF1058_RS18140at 248.594 kb on - strand, within HMPREF1058_RS18140at 248.607 kb on + strand, within HMPREF1058_RS18140at 248.648 kb on + strand, within HMPREF1058_RS18140at 248.648 kb on + strand, within HMPREF1058_RS18140at 248.648 kb on + strand, within HMPREF1058_RS18140at 248.649 kb on - strand, within HMPREF1058_RS18140at 248.662 kb on - strand, within HMPREF1058_RS18140at 248.673 kb on - strand, within HMPREF1058_RS18140at 248.693 kb on + strand, within HMPREF1058_RS18140at 248.737 kb on - strand, within HMPREF1058_RS18140at 248.801 kb on - strand, within HMPREF1058_RS18140at 248.803 kb on + strand, within HMPREF1058_RS18140at 248.803 kb on + strand, within HMPREF1058_RS18140at 248.804 kb on - strand, within HMPREF1058_RS18140at 248.834 kb on - strand, within HMPREF1058_RS18140at 248.846 kb on + strand, within HMPREF1058_RS18140at 248.847 kb on - strand, within HMPREF1058_RS18140at 248.848 kb on + strand, within HMPREF1058_RS18140at 248.898 kb on - strand, within HMPREF1058_RS18140at 248.922 kb on - strand, within HMPREF1058_RS18140at 248.930 kb on + strand, within HMPREF1058_RS18140at 248.931 kb on - strand, within HMPREF1058_RS18140at 248.983 kb on + strand, within HMPREF1058_RS18140at 248.984 kb on - strand, within HMPREF1058_RS18140at 248.990 kb on + strand, within HMPREF1058_RS18140at 249.024 kb on - strand, within HMPREF1058_RS18140at 249.029 kb on + strand, within HMPREF1058_RS18140at 249.030 kb on - strand, within HMPREF1058_RS18140at 249.051 kb on - strand, within HMPREF1058_RS18140at 249.056 kb on + strand, within HMPREF1058_RS18140at 249.068 kb on - strand, within HMPREF1058_RS18140at 249.168 kb on + strandat 249.168 kb on + strandat 249.170 kb on + strandat 249.187 kb on + strandat 249.213 kb on - strandat 249.239 kb on + strandat 249.243 kb on + strandat 249.244 kb on - strandat 249.264 kb on - strandat 249.275 kb on - strandat 249.275 kb on - strandat 249.276 kb on + strandat 249.276 kb on + strandat 249.328 kb on + strand, within HMPREF1058_RS18135at 249.381 kb on + strand, within HMPREF1058_RS18135at 249.405 kb on - strand, within HMPREF1058_RS18135at 249.413 kb on + strand, within HMPREF1058_RS18135at 249.417 kb on + strand, within HMPREF1058_RS18135at 249.429 kb on - strand, within HMPREF1058_RS18135at 249.469 kb on + strand, within HMPREF1058_RS18135at 249.486 kb on + strand, within HMPREF1058_RS18135at 249.497 kb on + strand, within HMPREF1058_RS18135at 249.500 kb on + strand, within HMPREF1058_RS18135at 249.555 kb on + strand, within HMPREF1058_RS18135at 249.576 kb on - strand, within HMPREF1058_RS18135at 249.601 kb on + strandat 249.602 kb on - strand, within HMPREF1058_RS18135at 249.605 kb on - strand, within HMPREF1058_RS18135at 249.619 kb on + strand, within HMPREF1058_RS18135at 249.624 kb on + strand, within HMPREF1058_RS18135at 249.641 kb on + strand, within HMPREF1058_RS18135at 249.684 kb on + strandat 249.685 kb on - strand, within HMPREF1058_RS18135at 249.715 kb on + strand, within HMPREF1058_RS18135at 249.796 kb on - strand, within HMPREF1058_RS18135at 249.796 kb on - strand, within HMPREF1058_RS18135at 249.821 kb on - strand, within HMPREF1058_RS18135at 249.838 kb on + strand, within HMPREF1058_RS18135at 249.842 kb on + strand, within HMPREF1058_RS18135at 249.852 kb on - strand, within HMPREF1058_RS18135at 249.856 kb on + strand, within HMPREF1058_RS18135at 249.880 kb on + strandat 249.880 kb on + strandat 249.881 kb on - strandat 249.881 kb on - strandat 249.883 kb on - strandat 249.883 kb on - strandat 249.885 kb on - strandat 249.885 kb on - strandat 249.885 kb on - strandat 249.917 kb on + strandat 249.919 kb on + strandat 249.944 kb on + strandat 249.999 kb on - strandat 250.010 kb on - strandat 250.033 kb on + strandat 250.039 kb on - strandat 250.039 kb on - strandat 250.042 kb on + strandat 250.042 kb on + strandat 250.042 kb on + strandat 250.078 kb on - strandat 250.161 kb on - strandat 250.196 kb on + strandat 250.269 kb on + strandat 250.310 kb on + strandat 250.310 kb on + strandat 250.311 kb on - strandat 250.311 kb on - strandat 250.324 kb on + strandat 250.330 kb on + strandat 250.385 kb on + strandat 250.385 kb on + strandat 250.385 kb on + strandat 250.386 kb on - strandat 250.395 kb on + strandat 250.402 kb on + strandat 250.403 kb on - strandat 250.496 kb on - strand, within HMPREF1058_RS21395at 250.513 kb on - strand, within HMPREF1058_RS21395at 250.532 kb on - strand, within HMPREF1058_RS21395at 250.542 kb on - strand, within HMPREF1058_RS21395at 250.542 kb on - strand, within HMPREF1058_RS21395at 250.543 kb on + strand, within HMPREF1058_RS21395at 250.544 kb on - strand, within HMPREF1058_RS21395at 250.563 kb on + strand, within HMPREF1058_RS21395at 250.565 kb on + strand, within HMPREF1058_RS21395at 250.565 kb on + strand, within HMPREF1058_RS21395at 250.571 kb on + strand, within HMPREF1058_RS21395at 250.572 kb on - strand, within HMPREF1058_RS21395at 250.594 kb on + strand, within HMPREF1058_RS21395at 250.626 kb on + strand, within HMPREF1058_RS21395at 250.627 kb on - strand, within HMPREF1058_RS21395at 250.637 kb on + strand, within HMPREF1058_RS21395at 250.637 kb on + strand, within HMPREF1058_RS21395at 250.638 kb on - strand, within HMPREF1058_RS21395at 250.638 kb on - strand, within HMPREF1058_RS21395at 250.660 kb on + strand, within HMPREF1058_RS21395at 250.682 kb on + strand, within HMPREF1058_RS21395at 250.682 kb on + strand, within HMPREF1058_RS21395at 250.825 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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248,257 + HMPREF1058_RS18140 0.14 -0.3
248,268 + HMPREF1058_RS18140 0.15 -0.5
248,269 - HMPREF1058_RS18140 0.15 -1.1
248,275 + HMPREF1058_RS18140 0.15 -0.6
248,283 - HMPREF1058_RS18140 0.16 -0.6
248,297 + HMPREF1058_RS18140 0.17 -0.7
248,297 + HMPREF1058_RS18140 0.17 +0.2
248,298 - HMPREF1058_RS18140 0.17 -0.6
248,386 + HMPREF1058_RS18140 0.25 +0.0
248,414 - HMPREF1058_RS18140 0.28 -0.2
248,433 - HMPREF1058_RS18140 0.29 +0.9
248,440 + HMPREF1058_RS18140 0.30 -1.0
248,441 - HMPREF1058_RS18140 0.30 -0.2
248,467 + HMPREF1058_RS18140 0.32 -0.8
248,468 - HMPREF1058_RS18140 0.32 -0.5
248,468 - HMPREF1058_RS18140 0.32 +0.0
248,473 - HMPREF1058_RS18140 0.33 -0.3
248,489 + HMPREF1058_RS18140 0.34 -0.2
248,520 + HMPREF1058_RS18140 0.37 -0.8
248,521 - HMPREF1058_RS18140 0.37 -0.7
248,592 - HMPREF1058_RS18140 0.43 +0.1
248,592 - HMPREF1058_RS18140 0.43 -0.3
248,594 - HMPREF1058_RS18140 0.43 -0.4
248,594 - HMPREF1058_RS18140 0.43 +0.0
248,607 + HMPREF1058_RS18140 0.45 -0.4
248,648 + HMPREF1058_RS18140 0.48 -0.5
248,648 + HMPREF1058_RS18140 0.48 +0.1
248,648 + HMPREF1058_RS18140 0.48 -0.1
248,649 - HMPREF1058_RS18140 0.48 -2.5
248,662 - HMPREF1058_RS18140 0.49 +0.2
248,673 - HMPREF1058_RS18140 0.50 -2.8
248,693 + HMPREF1058_RS18140 0.52 +0.4
248,737 - HMPREF1058_RS18140 0.56 -0.4
248,801 - HMPREF1058_RS18140 0.62 -1.1
248,803 + HMPREF1058_RS18140 0.62 -0.3
248,803 + HMPREF1058_RS18140 0.62 -0.1
248,804 - HMPREF1058_RS18140 0.62 +2.5
248,834 - HMPREF1058_RS18140 0.65 -0.2
248,846 + HMPREF1058_RS18140 0.66 -0.5
248,847 - HMPREF1058_RS18140 0.66 +0.1
248,848 + HMPREF1058_RS18140 0.66 +0.6
248,898 - HMPREF1058_RS18140 0.70 +1.1
248,922 - HMPREF1058_RS18140 0.72 -0.3
248,930 + HMPREF1058_RS18140 0.73 -0.7
248,931 - HMPREF1058_RS18140 0.73 -0.6
248,983 + HMPREF1058_RS18140 0.78 +0.4
248,984 - HMPREF1058_RS18140 0.78 -1.1
248,990 + HMPREF1058_RS18140 0.78 -0.7
249,024 - HMPREF1058_RS18140 0.81 +0.7
249,029 + HMPREF1058_RS18140 0.82 +0.9
249,030 - HMPREF1058_RS18140 0.82 -1.5
249,051 - HMPREF1058_RS18140 0.84 +0.5
249,056 + HMPREF1058_RS18140 0.84 +1.1
249,068 - HMPREF1058_RS18140 0.85 -0.8
249,168 + +0.5
249,168 + +0.7
249,170 + -0.4
249,187 + -0.5
249,213 - -1.1
249,239 + +0.7
249,243 + -0.5
249,244 - -1.2
249,264 - -1.4
249,275 - -2.1
249,275 - -1.1
249,276 + +0.3
249,276 + +0.6
249,328 + HMPREF1058_RS18135 0.14 +0.5
249,381 + HMPREF1058_RS18135 0.21 +0.1
249,405 - HMPREF1058_RS18135 0.25 -1.0
249,413 + HMPREF1058_RS18135 0.26 -0.4
249,417 + HMPREF1058_RS18135 0.26 +0.1
249,429 - HMPREF1058_RS18135 0.28 -0.9
249,469 + HMPREF1058_RS18135 0.34 +0.4
249,486 + HMPREF1058_RS18135 0.36 +0.8
249,497 + HMPREF1058_RS18135 0.38 -0.2
249,500 + HMPREF1058_RS18135 0.38 +0.1
249,555 + HMPREF1058_RS18135 0.46 +0.2
249,576 - HMPREF1058_RS18135 0.49 -1.5
249,601 + +2.1
249,602 - HMPREF1058_RS18135 0.52 -1.1
249,605 - HMPREF1058_RS18135 0.53 -0.4
249,619 + HMPREF1058_RS18135 0.55 +0.6
249,624 + HMPREF1058_RS18135 0.56 -0.8
249,641 + HMPREF1058_RS18135 0.58 +0.2
249,684 + +1.7
249,685 - HMPREF1058_RS18135 0.64 +0.5
249,715 + HMPREF1058_RS18135 0.68 -1.0
249,796 - HMPREF1058_RS18135 0.80 +0.2
249,796 - HMPREF1058_RS18135 0.80 -0.2
249,821 - HMPREF1058_RS18135 0.83 +0.4
249,838 + HMPREF1058_RS18135 0.86 -1.8
249,842 + HMPREF1058_RS18135 0.86 -0.6
249,852 - HMPREF1058_RS18135 0.88 -0.4
249,856 + HMPREF1058_RS18135 0.88 -0.2
249,880 + -1.5
249,880 + -0.5
249,881 - -1.7
249,881 - +0.4
249,883 - +1.1
249,883 - +0.0
249,885 - -0.3
249,885 - +0.3
249,885 - -0.2
249,917 + +0.1
249,919 + +0.3
249,944 + -0.5
249,999 - +0.2
250,010 - +1.1
250,033 + -0.5
250,039 - -1.0
250,039 - +0.4
250,042 + -0.0
250,042 + +0.8
250,042 + -0.3
250,078 - -0.3
250,161 - -0.6
250,196 + +0.1
250,269 + +2.4
250,310 + -0.0
250,310 + +1.1
250,311 - -0.9
250,311 - +0.7
250,324 + -0.0
250,330 + -0.9
250,385 + -0.1
250,385 + +1.1
250,385 + +0.0
250,386 - -0.8
250,395 + -0.7
250,402 + +0.5
250,403 - -0.0
250,496 - HMPREF1058_RS21395 0.27 +0.1
250,513 - HMPREF1058_RS21395 0.31 -0.9
250,532 - HMPREF1058_RS21395 0.36 -0.5
250,542 - HMPREF1058_RS21395 0.38 -1.3
250,542 - HMPREF1058_RS21395 0.38 +1.3
250,543 + HMPREF1058_RS21395 0.38 -1.2
250,544 - HMPREF1058_RS21395 0.39 -0.5
250,563 + HMPREF1058_RS21395 0.43 +0.1
250,565 + HMPREF1058_RS21395 0.44 -0.3
250,565 + HMPREF1058_RS21395 0.44 -0.5
250,571 + HMPREF1058_RS21395 0.45 -0.7
250,572 - HMPREF1058_RS21395 0.45 -0.8
250,594 + HMPREF1058_RS21395 0.50 -0.4
250,626 + HMPREF1058_RS21395 0.58 +0.0
250,627 - HMPREF1058_RS21395 0.58 -0.4
250,637 + HMPREF1058_RS21395 0.60 +0.2
250,637 + HMPREF1058_RS21395 0.60 +0.7
250,638 - HMPREF1058_RS21395 0.61 +0.3
250,638 - HMPREF1058_RS21395 0.61 -0.7
250,660 + HMPREF1058_RS21395 0.66 +1.1
250,682 + HMPREF1058_RS21395 0.71 -1.2
250,682 + HMPREF1058_RS21395 0.71 -0.2
250,825 - -1.3

Or see this region's nucleotide sequence