Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15875

Experiment: a-Cyclodextrin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS15880 and HMPREF1058_RS15875 are separated by 2 nucleotidesHMPREF1058_RS15875 and HMPREF1058_RS15870 are separated by 49 nucleotides HMPREF1058_RS15880: HMPREF1058_RS15880 - histidinol-phosphate transaminase, at 814,947 to 815,987 _RS15880 HMPREF1058_RS15875: HMPREF1058_RS15875 - histidinol dehydrogenase, at 815,990 to 817,270 _RS15875 HMPREF1058_RS15870: HMPREF1058_RS15870 - ATP phosphoribosyltransferase, at 817,320 to 818,171 _RS15870 Position (kb) 815 816 817 818Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 815.040 kb on - strandat 815.059 kb on - strand, within HMPREF1058_RS15880at 815.074 kb on - strand, within HMPREF1058_RS15880at 815.080 kb on + strand, within HMPREF1058_RS15880at 815.088 kb on + strand, within HMPREF1058_RS15880at 815.088 kb on + strand, within HMPREF1058_RS15880at 815.112 kb on - strand, within HMPREF1058_RS15880at 815.230 kb on + strand, within HMPREF1058_RS15880at 815.294 kb on + strand, within HMPREF1058_RS15880at 815.295 kb on - strand, within HMPREF1058_RS15880at 815.295 kb on - strand, within HMPREF1058_RS15880at 815.310 kb on - strand, within HMPREF1058_RS15880at 815.405 kb on - strand, within HMPREF1058_RS15880at 815.408 kb on + strand, within HMPREF1058_RS15880at 815.463 kb on + strand, within HMPREF1058_RS15880at 815.671 kb on + strand, within HMPREF1058_RS15880at 815.672 kb on - strand, within HMPREF1058_RS15880at 815.672 kb on - strand, within HMPREF1058_RS15880at 815.675 kb on + strand, within HMPREF1058_RS15880at 815.675 kb on + strand, within HMPREF1058_RS15880at 815.676 kb on - strand, within HMPREF1058_RS15880at 815.676 kb on - strand, within HMPREF1058_RS15880at 815.684 kb on + strand, within HMPREF1058_RS15880at 815.700 kb on + strand, within HMPREF1058_RS15880at 815.813 kb on + strand, within HMPREF1058_RS15880at 815.814 kb on - strand, within HMPREF1058_RS15880at 815.835 kb on - strand, within HMPREF1058_RS15880at 815.835 kb on - strand, within HMPREF1058_RS15880at 815.855 kb on + strand, within HMPREF1058_RS15880at 815.856 kb on - strand, within HMPREF1058_RS15880at 815.861 kb on + strand, within HMPREF1058_RS15880at 815.862 kb on - strand, within HMPREF1058_RS15880at 815.912 kb on + strandat 815.935 kb on + strandat 816.150 kb on + strand, within HMPREF1058_RS15875at 816.181 kb on + strand, within HMPREF1058_RS15875at 816.181 kb on + strand, within HMPREF1058_RS15875at 816.233 kb on + strand, within HMPREF1058_RS15875at 816.234 kb on - strand, within HMPREF1058_RS15875at 816.278 kb on - strand, within HMPREF1058_RS15875at 816.278 kb on - strand, within HMPREF1058_RS15875at 816.280 kb on - strand, within HMPREF1058_RS15875at 816.316 kb on - strand, within HMPREF1058_RS15875at 816.435 kb on + strand, within HMPREF1058_RS15875at 816.467 kb on - strand, within HMPREF1058_RS15875at 816.589 kb on + strand, within HMPREF1058_RS15875at 816.593 kb on + strand, within HMPREF1058_RS15875at 816.639 kb on + strand, within HMPREF1058_RS15875at 816.640 kb on - strand, within HMPREF1058_RS15875at 816.740 kb on - strand, within HMPREF1058_RS15875at 816.766 kb on - strand, within HMPREF1058_RS15875at 816.816 kb on - strand, within HMPREF1058_RS15875at 816.863 kb on + strand, within HMPREF1058_RS15875at 816.864 kb on - strand, within HMPREF1058_RS15875at 817.028 kb on - strand, within HMPREF1058_RS15875at 817.111 kb on + strand, within HMPREF1058_RS15875at 817.111 kb on + strand, within HMPREF1058_RS15875at 817.255 kb on - strandat 817.270 kb on + strandat 817.271 kb on - strandat 817.276 kb on + strandat 817.277 kb on - strandat 817.284 kb on + strandat 817.321 kb on + strandat 817.421 kb on + strand, within HMPREF1058_RS15870at 817.421 kb on + strand, within HMPREF1058_RS15870at 817.421 kb on + strand, within HMPREF1058_RS15870at 817.422 kb on - strand, within HMPREF1058_RS15870at 817.422 kb on - strand, within HMPREF1058_RS15870at 817.535 kb on - strand, within HMPREF1058_RS15870at 817.535 kb on - strand, within HMPREF1058_RS15870at 817.620 kb on - strand, within HMPREF1058_RS15870at 817.688 kb on + strand, within HMPREF1058_RS15870at 817.689 kb on - strand, within HMPREF1058_RS15870at 817.689 kb on - strand, within HMPREF1058_RS15870at 817.715 kb on + strand, within HMPREF1058_RS15870at 817.822 kb on + strand, within HMPREF1058_RS15870at 817.839 kb on - strand, within HMPREF1058_RS15870at 817.881 kb on - strand, within HMPREF1058_RS15870at 817.881 kb on - strand, within HMPREF1058_RS15870at 817.884 kb on + strand, within HMPREF1058_RS15870at 818.064 kb on + strand, within HMPREF1058_RS15870at 818.204 kb on + strandat 818.215 kb on + strandat 818.242 kb on + strandat 818.242 kb on + strandat 818.244 kb on + strandat 818.247 kb on + strandat 818.247 kb on + strandat 818.248 kb on - strandat 818.248 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
remove
815,040 - -3.0
815,059 - HMPREF1058_RS15880 0.11 -3.9
815,074 - HMPREF1058_RS15880 0.12 -3.3
815,080 + HMPREF1058_RS15880 0.13 -4.0
815,088 + HMPREF1058_RS15880 0.14 -2.0
815,088 + HMPREF1058_RS15880 0.14 -5.0
815,112 - HMPREF1058_RS15880 0.16 -4.0
815,230 + HMPREF1058_RS15880 0.27 -3.1
815,294 + HMPREF1058_RS15880 0.33 -2.5
815,295 - HMPREF1058_RS15880 0.33 -5.7
815,295 - HMPREF1058_RS15880 0.33 -2.5
815,310 - HMPREF1058_RS15880 0.35 -4.6
815,405 - HMPREF1058_RS15880 0.44 -3.0
815,408 + HMPREF1058_RS15880 0.44 -5.1
815,463 + HMPREF1058_RS15880 0.50 -2.2
815,671 + HMPREF1058_RS15880 0.70 -3.3
815,672 - HMPREF1058_RS15880 0.70 -4.1
815,672 - HMPREF1058_RS15880 0.70 -3.2
815,675 + HMPREF1058_RS15880 0.70 -4.3
815,675 + HMPREF1058_RS15880 0.70 -3.2
815,676 - HMPREF1058_RS15880 0.70 -2.6
815,676 - HMPREF1058_RS15880 0.70 -4.0
815,684 + HMPREF1058_RS15880 0.71 -2.3
815,700 + HMPREF1058_RS15880 0.72 -5.9
815,813 + HMPREF1058_RS15880 0.83 -3.0
815,814 - HMPREF1058_RS15880 0.83 -2.2
815,835 - HMPREF1058_RS15880 0.85 -0.9
815,835 - HMPREF1058_RS15880 0.85 -4.1
815,855 + HMPREF1058_RS15880 0.87 -1.9
815,856 - HMPREF1058_RS15880 0.87 -4.0
815,861 + HMPREF1058_RS15880 0.88 -3.3
815,862 - HMPREF1058_RS15880 0.88 -2.6
815,912 + -2.5
815,935 + -3.7
816,150 + HMPREF1058_RS15875 0.12 -5.4
816,181 + HMPREF1058_RS15875 0.15 -2.7
816,181 + HMPREF1058_RS15875 0.15 -1.8
816,233 + HMPREF1058_RS15875 0.19 -3.4
816,234 - HMPREF1058_RS15875 0.19 -3.1
816,278 - HMPREF1058_RS15875 0.22 -4.0
816,278 - HMPREF1058_RS15875 0.22 -0.9
816,280 - HMPREF1058_RS15875 0.23 -3.1
816,316 - HMPREF1058_RS15875 0.25 -4.8
816,435 + HMPREF1058_RS15875 0.35 -1.9
816,467 - HMPREF1058_RS15875 0.37 -2.8
816,589 + HMPREF1058_RS15875 0.47 -3.5
816,593 + HMPREF1058_RS15875 0.47 -3.2
816,639 + HMPREF1058_RS15875 0.51 -6.2
816,640 - HMPREF1058_RS15875 0.51 -4.4
816,740 - HMPREF1058_RS15875 0.59 -2.8
816,766 - HMPREF1058_RS15875 0.61 -2.1
816,816 - HMPREF1058_RS15875 0.64 -2.8
816,863 + HMPREF1058_RS15875 0.68 -4.8
816,864 - HMPREF1058_RS15875 0.68 -4.1
817,028 - HMPREF1058_RS15875 0.81 -2.1
817,111 + HMPREF1058_RS15875 0.88 -3.2
817,111 + HMPREF1058_RS15875 0.88 -3.2
817,255 - -2.2
817,270 + -2.8
817,271 - -3.4
817,276 + -3.3
817,277 - -0.2
817,284 + -2.4
817,321 + -5.2
817,421 + HMPREF1058_RS15870 0.12 -3.3
817,421 + HMPREF1058_RS15870 0.12 -4.5
817,421 + HMPREF1058_RS15870 0.12 -1.9
817,422 - HMPREF1058_RS15870 0.12 -0.4
817,422 - HMPREF1058_RS15870 0.12 -1.9
817,535 - HMPREF1058_RS15870 0.25 -5.4
817,535 - HMPREF1058_RS15870 0.25 -2.1
817,620 - HMPREF1058_RS15870 0.35 -4.4
817,688 + HMPREF1058_RS15870 0.43 -1.9
817,689 - HMPREF1058_RS15870 0.43 -4.4
817,689 - HMPREF1058_RS15870 0.43 -0.9
817,715 + HMPREF1058_RS15870 0.46 -4.4
817,822 + HMPREF1058_RS15870 0.59 -3.5
817,839 - HMPREF1058_RS15870 0.61 -4.2
817,881 - HMPREF1058_RS15870 0.66 -4.3
817,881 - HMPREF1058_RS15870 0.66 -3.3
817,884 + HMPREF1058_RS15870 0.66 -5.3
818,064 + HMPREF1058_RS15870 0.87 -2.6
818,204 + -2.6
818,215 + -5.1
818,242 + -5.3
818,242 + -3.2
818,244 + -4.0
818,247 + -5.4
818,247 + -2.9
818,248 - -0.8
818,248 - -0.4

Or see this region's nucleotide sequence